cluster # 5857

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Anopheles gambiae
cluster # 5857 cluster # 5857 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5857#0 length = 874 sequences # 3

consensus_5857#1 length = 530 sequences # 1

consensusID : consensus_5857#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 874
fasta sequence

                              [CCGCCCACGCGTCCGAGACGATGTCCGATACGACGTTCAAGGCGCTCCGGCGGCAGCTGCCCGTAACGCGAACGAAAATCGACTGGAGCAAGATCGTATCGTACAGTATCGGTAAGGAGCTGAAGACGCAGTAAAAAGCGCAAAGCGGGCGCGCTGCCTTCCCCTCCTTTCCCGGACACGTATACACGCTGCAGTCGGCGGGGGCAGTCTGGCCGGGGCCGGTCGGATACGGCAGAACACGCGACATATAAATAAGGAACTAAGGCGCATGTTAAAGGGCAAGGGCGCGCGAAACACGAGGAAAGTTAAAAGGGAATGCGAACTAGAAAAATGAGGCGACAAGGTGAAGCTTTTTTTCTTCTTCTTTTTGTTTGTTAATTTCGTACGTACAAGATGATAGCAAGATCCCTCCCCCCGTGCGCGCAATGCTAATGGAGGTATCAGCATTGGAAGGTTCCGCAGCGAGTGAGAGGGAGAAAGAGAGAGAGATCCGCAATCGCGCACGAAGGACCAGAGTTCTTTCAAAAACTAGTATTCAAAAGCGCCGTTTGAAGTATGATAAGGGGAAGTAGCGGAGCGATAGTAGACCCCATACACGATGCGTAACCGTAATCGTCCACGATCGCCTCTCGTGGTGGTTAAGGTTGTTAATGATATAGGGAACCTGTCCATTCACAGACGATACCGATCTCTGCTCGCTGTCTGTTTGCTGCTTTAGATTCGCGTTTAATGGTCCCTTTTCCTGGAGCCTGCTTTTTTTTGCGATCGGCCGAACATCTTGAGACGTTCGTTTTCTTTCTCTTTTTTTTTACCTTTTGATTTTATGAACTACTGTGTAAGTAACATTTGTGAATCCATGAGAAGTAGTAGAACT]

[+] EMBL BM654993             [CCGCCCACGCGTCCGAGACGATGTCCGATACGACGTTCAAGGCGCTCCGGCGGCAGCTGCCCGTAACGCGAACGAAAATCGACTGGAGCAAGATCGTATCGTACAGTATCGGTAAGGAGCTGAAGACGCAGTAAAAAGCGCAAAGCGGGCGCGCTGCCTTCCCCTCCTTTCCCGGACACGTATACACGCTGCAGTCGGCGGGGGCAGTCTGGCCGGGGCCGGTCGGATACGGCAGAACACGCGACATATAAATAAGGAACTAAGGCGCATGTTAAAGGGCAAGGGCGCGCGAAACACGAGGAAAGTTAAAAGGGAATGCGAACTAGAAAAATGAGGCGACAAGGTGAAGCTTTTTTTCTTCTTCTTTTTGTTTGTTAATTTCGTACGTACAAGATGATAGCAAGATCCCTCCCCCCGTGCGCGCAATGCTAATGGAGGTATCAGCATTGGAAGGTTCCGCAGCGAGTGAGAGGGAGAAAGAGAGAGAGATCCGCAATCGCGCACGAAGGACCAGAGTTCTTTCAAAAACTAGTATTCAAAAGCGCCGTTTGAAGTATGATAAGGGGAAGTAGCGGAGCGATAGTAGACCCCATACACGATGCGTAACCGTAATCGTCCACGATCGCCTCTCGTGGTGGTTAAGGTTGTTAATGATATAGGGAACCTGTCCATTCA                                                                                                                                                                                                       ]
[+] EMBL BM620258             [                                                                                                                                                                                                                                             ccgGCGACATATAAATAAGGAACTAAGGCGCATGTTAAAGGGCAAGGGCGCGCGAAACACGAGGAAAGTTAAAAGGGAATGCGAACTAGAAAAATGAGGCGACAAGGTGAAGCTTTTTTTCTTCTTCTTTTTGTTTGTTAATTTCGTACGTACAAGATGATAGCAAGATCCCTCCCCCCGTGCGCGCAATGCTAATGGAGGTATCAGCATTGGAAGGTTCCGCAGCGAGTGAGAGGGAGAAAGAGAGAGAGATCCGCAATCGCGCACGAAGGACCAGAGTTCTTTCAAAAACTAGTATTCAAAAGCGCCGTTTGAAGTATGATAAGGGGAAGTAGCGGAGCGATAGTAGACCCCATACACGATGCGTAACCGTAATCGTCCACGATCGCCTCTCGTGGTGGTTAAGGTTGTTAATGATATAGGGAACCTGTCCATTCACAGACGATACCGATCTCTGCTCGCTGTCTGTTTGCTGCTTTAGATTCGCGTTTAATGGTCCCTTTTCCTGGAGCCTGCTTTTTTTTGCGATCGGCCGAACATCTTGAGACGTTCGTTTTCTTTCTCTTTTTTTTTACCTTTTGATTTTATGAACTACTGTGTAAGTAAC                              ]
[+] EMBL BX617475             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          AGGACCAGAGTTCTTTCAAAAACTAGTATTCAAAAGCGCCGTTTGAAGTATGATAAGGGGAAGTAGCGGAGCGATAGTAGACCCCATACACGATGCGTAACCGTAATCGTCCACGATCGCCTCTCGTGGTGGTTAAGGTTGTTAATGATATAGGGAACCTGTCCATTCACAGACGATACCGATCTCTGCTCGCTGTCTGTTTGCTGCTTTAGATTCGCGTTTAATGGTCCCTTTTCCTGGAGCCTGCTTTTTTTTGCGATCGGCCGAACATCTTGAGACGTTCGTTTTCTTTCTCTTTTTTTTTACCTTTTGATTTTATGAACTACTGTGTAAGTAACATTTGTGAATCCATGAGAAGTAGTAGAACT]




>consensus_5857#0
CCGCCCACGCGTCCGAGACGATGTCCGATACGACGTTCAAGGCGCTCCGGCGGCAGCTGC
CCGTAACGCGAACGAAAATCGACTGGAGCAAGATCGTATCGTACAGTATCGGTAAGGAGC
TGAAGACGCAGTAAAAAGCGCAAAGCGGGCGCGCTGCCTTCCCCTCCTTTCCCGGACACG
TATACACGCTGCAGTCGGCGGGGGCAGTCTGGCCGGGGCCGGTCGGATACGGCAGAACAC
GCGACATATAAATAAGGAACTAAGGCGCATGTTAAAGGGCAAGGGCGCGCGAAACACGAG
GAAAGTTAAAAGGGAATGCGAACTAGAAAAATGAGGCGACAAGGTGAAGCTTTTTTTCTT
CTTCTTTTTGTTTGTTAATTTCGTACGTACAAGATGATAGCAAGATCCCTCCCCCCGTGC
GCGCAATGCTAATGGAGGTATCAGCATTGGAAGGTTCCGCAGCGAGTGAGAGGGAGAAAG
AGAGAGAGATCCGCAATCGCGCACGAAGGACCAGAGTTCTTTCAAAAACTAGTATTCAAA
AGCGCCGTTTGAAGTATGATAAGGGGAAGTAGCGGAGCGATAGTAGACCCCATACACGAT
GCGTAACCGTAATCGTCCACGATCGCCTCTCGTGGTGGTTAAGGTTGTTAATGATATAGG
GAACCTGTCCATTCACAGACGATACCGATCTCTGCTCGCTGTCTGTTTGCTGCTTTAGAT
TCGCGTTTAATGGTCCCTTTTCCTGGAGCCTGCTTTTTTTTGCGATCGGCCGAACATCTT
GAGACGTTCGTTTTCTTTCTCTTTTTTTTTACCTTTTGATTTTATGAACTACTGTGTAAG
TAACATTTGTGAATCCATGAGAAGTAGTAGAACT

consensusID : consensus_5857#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 530
fasta sequence

                              [GAACTAGAAAAATGAGGCGACAAGGTGAAGCTTTTTTTCTTCTTCTTTTTGTTTGTTAATTTCGTACGTACAAGATGATAGCAAGATCCCTCCCCCCGTGCGCGCAATGCTAATGGAGGTATCAGCATTGGAAGGTTCCGCAGCGAGTGAGAGGGAGAAAGAGAGAGAGATCCGCAATCGCGCACGAAGGACCAGAGTTCTTTCAAAAACTAGTATTCAAAAGAACTCTGGTCCTTTGAATACTAGTTTTTGAAAGAACCAGAGTTCTTTTGAATACTAGTTTTTGAAAGCGCCGTTTGAAGTATGATAAGGGGAAGTAGCGGAGCGATAGTAGACCCCATACACGATGCGTAACCGTAATCGTCCACGATCGCCTCTCGTGGTGGTTAAGGTTGTTAATGATATAGGGAACCTGTCCATTCACAGACGATACCGATCTCTGCTCGCTGTCTGTTTGCTGCTTTAGATTCGCGTTTAATGGTCCCTTTTCCTGGAGCCTGCTTTTTTTTGCGATCGGCCGAACATCTTGA]

[+] EMBL BX605979             [GAACTAGAAAAATGAGGCGACAAGGTGAAGCTTTTTTTCTTCTTCTTTTTGTTTGTTAATTTCGTACGTACAAGATGATAGCAAGATCCCTCCCCCCGTGCGCGCAATGCTAATGGAGGTATCAGCATTGGAAGGTTCCGCAGCGAGTGAGAGGGAGAAAGAGAGAGAGATCCGCAATCGCGCACGAAGGACCAGAGTTCTTTCAAAAACTAGTATTCAAAAGAACTCTGGTCCTTTGAATACTAGTTTTTGAAAGAACCAGAGTTCTTTTGAATACTAGTTTTTGAAAGCGCCGTTTGAAGTATGATAAGGGGAAGTAGCGGAGCGATAGTAGACCCCATACACGATGCGTAACCGTAATCGTCCACGATCGCCTCTCGTGGTGGTTAAGGTTGTTAATGATATAGGGAACCTGTCCATTCACAGACGATACCGATCTCTGCTCGCTGTCTGTTTGCTGCTTTAGATTCGCGTTTAATGGTCCCTTTTCCTGGAGCCTGCTTTTTTTTGCGATCGGCCGAACATCTTGA]




>consensus_5857#1
GAACTAGAAAAATGAGGCGACAAGGTGAAGCTTTTTTTCTTCTTCTTTTTGTTTGTTAAT
TTCGTACGTACAAGATGATAGCAAGATCCCTCCCCCCGTGCGCGCAATGCTAATGGAGGT
ATCAGCATTGGAAGGTTCCGCAGCGAGTGAGAGGGAGAAAGAGAGAGAGATCCGCAATCG
CGCACGAAGGACCAGAGTTCTTTCAAAAACTAGTATTCAAAAGAACTCTGGTCCTTTGAA
TACTAGTTTTTGAAAGAACCAGAGTTCTTTTGAATACTAGTTTTTGAAAGCGCCGTTTGA
AGTATGATAAGGGGAAGTAGCGGAGCGATAGTAGACCCCATACACGATGCGTAACCGTAA
TCGTCCACGATCGCCTCTCGTGGTGGTTAAGGTTGTTAATGATATAGGGAACCTGTCCAT
TCACAGACGATACCGATCTCTGCTCGCTGTCTGTTTGCTGCTTTAGATTCGCGTTTAATG
GTCCCTTTTCCTGGAGCCTGCTTTTTTTTGCGATCGGCCGAACATCTTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5857#0      CCGCCCACGCGTCCGAGACGATGTCCGATACGACGTTCAAGGCGCTCCGGCGGCAGCTGC 60
consensus_5857#1      ------------------------------------------------------------
                                                                                  

consensus_5857#0      CCGTAACGCGAACGAAAATCGACTGGAGCAAGATCGTATCGTACAGTATCGGTAAGGAGC 120
consensus_5857#1      ------------------------------------------------------------
                                                                                  

consensus_5857#0      TGAAGACGCAGTAAAAAGCGCAAAGCGGGCGCGCTGCCTTCCCCTCCTTTCCCGGACACG 180
consensus_5857#1      ------------------------------------------------------------
                                                                                  

consensus_5857#0      TATACACGCTGCAGTCGGCGGGGGCAGTCTGGCCGGGGCCGGTCGGATACGGCAGAACAC 240
consensus_5857#1      ------------------------------------------------------------
                                                                                  

consensus_5857#0      GCGACATATAAATAAGGAACTAAGGCGCATGTTAAAGGGCAAGGGCGCGCGAAACACGAG 300
consensus_5857#1      ------------------------------------------------------------
                                                                                  

consensus_5857#0      GAAAGTTAAAAGGGAATGCGAACTAGAAAAATGAGGCGACAAGGTGAAGCTTTTTTTCTT 360
consensus_5857#1      -------------------GAACTAGAAAAATGAGGCGACAAGGTGAAGCTTTTTTTCTT 41
                                         *****************************************

consensus_5857#0      CTTCTTTTTGTTTGTTAATTTCGTACGTACAAGATGATAGCAAGATCCCTCCCCCCGTGC 420
consensus_5857#1      CTTCTTTTTGTTTGTTAATTTCGTACGTACAAGATGATAGCAAGATCCCTCCCCCCGTGC 101
                      ************************************************************

consensus_5857#0      GCGCAATGCTAATGGAGGTATCAGCATTGGAAGGTTCCGCAGCGAGTGAGAGGGAGAAAG 480
consensus_5857#1      GCGCAATGCTAATGGAGGTATCAGCATTGGAAGGTTCCGCAGCGAGTGAGAGGGAGAAAG 161
                      ************************************************************

consensus_5857#0      AGAGAGAGATCCGCAATCGCGCACGAAGGACCAGAGTTCTTTCAAAAACTAGTATTCAAA 540
consensus_5857#1      AGAGAGAGATCCGCAATCGCGCACGAAGGACCAGAGTTCTTTCAAAAACTAGTATTCAAA 221
                      ************************************************************

consensus_5857#0      AG---------------------------------------------------------- 542
consensus_5857#1      AGAACTCTGGTCCTTTGAATACTAGTTTTTGAAAGAACCAGAGTTCTTTTGAATACTAGT 281
                      **                                                          

consensus_5857#0      ---------CGCCGTTTGAAGTATGATAAGGGGAAGTAGCGGAGCGATAGTAGACCCCAT 593
consensus_5857#1      TTTTGAAAGCGCCGTTTGAAGTATGATAAGGGGAAGTAGCGGAGCGATAGTAGACCCCAT 341
                               ***************************************************

consensus_5857#0      ACACGATGCGTAACCGTAATCGTCCACGATCGCCTCTCGTGGTGGTTAAGGTTGTTAATG 653
consensus_5857#1      ACACGATGCGTAACCGTAATCGTCCACGATCGCCTCTCGTGGTGGTTAAGGTTGTTAATG 401
                      ************************************************************

consensus_5857#0      ATATAGGGAACCTGTCCATTCACAGACGATACCGATCTCTGCTCGCTGTCTGTTTGCTGC 713
consensus_5857#1      ATATAGGGAACCTGTCCATTCACAGACGATACCGATCTCTGCTCGCTGTCTGTTTGCTGC 461
                      ************************************************************

consensus_5857#0      TTTAGATTCGCGTTTAATGGTCCCTTTTCCTGGAGCCTGCTTTTTTTTGCGATCGGCCGA 773
consensus_5857#1      TTTAGATTCGCGTTTAATGGTCCCTTTTCCTGGAGCCTGCTTTTTTTTGCGATCGGCCGA 521
                      ************************************************************

consensus_5857#0      ACATCTTGAGACGTTCGTTTTCTTTCTCTTTTTTTTTACCTTTTGATTTTATGAACTACT 833
consensus_5857#1      ACATCTTGA--------------------------------------------------- 530
                      *********                                                   

consensus_5857#0      GTGTAAGTAACATTTGTGAATCCATGAGAAGTAGTAGAACT 874
consensus_5857#1      -----------------------------------------