These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5860#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1082 fasta sequence [CCGCAGACTCACAAGATCTCACAACACCATCGCCAGTGCGGAGAAGCATAGAGAAAACGCCAGCAGAAAAGAAAGCGACGACTTCCTCCCCGTCGGCAAACTCTCCCATTCTTCGCTTTTCGCTTGCCGATGTTGTTCCAGCAGTTTCACAATAACAACCACCGGTCACCGTCGGGTTGGGTTGAACGTTATTTTTAAAATTAAACCACCACCAACAGTACCGCCACCAGCTCTACCAGCACTAACCGGCCCGCGAGGTGATAATTAGAACGTCGTAAAGGTTGGCCGTTGCGTGTGGCGGAAGTCTCGAGAAGTTGGTTGTCTGTTGTGGCTGCGCTTCAGCTTCATACCGAGAGTCAACGTTTTATTCTGTGTTCAGTTGCGTTGCTGACTGCGTCGGGGCGGGATGAGAAAAACGATACATCGCCGTGGGGACGTCATACTGCAGGAGAAACCGTTCGCCTGTGTGCTCGATCCGCGCTACCGCGATTCAAGATGTGACCGTTGCTTTAAGGAGACGAAGGTGATGAAGTGTTCCAACTGTCTGTACGTGCGGTACTGTGGTCGGTCCTGCCAAAAGGAGGCATGGTCCGATCATAAGGAGGAATGCGAAAAGCTGAAAGCGTTACCGCCCGGGCTGGTCGTACCGTCGGCGGCACTGATGATTGCGCGGATCGTGCGCCGCTTGCTGAAGGGAGGCGACACGCACAAGGGCTACTACACCTCGAAGCAGTACCGCAAATTCTGCGATCTTATGCCACACGAGGAAAACATTCGAGCCGACTCCAAACGGATGGAACACTTCGGTACACTGTACATGGTACTGCAGCGGCTGCTGGATGAAGCATCCCGACCGACCAAAGCGGAATTGCTCAGAATCTATGGAAAGATGTGCATCAATACGTTCAACATACTGGACGCCGAGATGAGCACGATCGGGACGGGCATGTACATCGGTGCGTCCATCATCGATCACAGCTGCCGGCCGAACGTGGCCGTTTTCGTTCGACGGTGAAACGCTCCGGATGCGCCTGCTGGAAGACTACCCCGTAGCAGGAGCTGGACTTTGGCAAGCTGTTCAT] [+] EMBL BM647996 [CCGCAGACTCACAAGATCTCACAACACCATCGCCAGTGCGGAGAAGCATAGAGAAAACGCCAGCAGAAAAGAAAGCGACGACTTCCTCCCCGTCGGCAAACTCTCCCATTCTTCGCTTTTCGCTTGCCGATGTTGTTCCAGCAGTTTCACAATAACAACCACCGGTCACCGTCGGGTTGGGTTGAACGTTATTTTTAAAATTAAACCACCACCAACAGTACCGCCACCAGCTCTACCAGCACTAACCGGCCCGCGAGGTGATAATTAGAACGTCGTAAAGGTTGGCCGTTGCGTGTGGCGGAAGTCTCGAGAAGTTGGTTGTCTGTTGTGGCTGCGCTTCAGCTTCATACCGAGAGTCAACGTTTTATTCTGTGTTCAGTTGCGTTGCTGACTGCGTATGGGCGGGATGAGAAAAACGATACATCGCCGTGGGGACGTCATACTGCAGGAGAAACCGTTCGCCTGTGTGCTCGATCCGCGCTACCGCGATTCAAGATGTGACCGTTGCTTTAAGGAGACGAAGGTGATGAAGTGTTCCAACTGTCTGTACGTGCGGTACTGTGGTCGGTCCTGCCAAAAGGAGGCATGGTCCGATCATAAGGAGGAATGCGAAAAGCTGAAAGCGTTACCGCCCGGGCTGGTCGTACCGTCGGC ] [+] EMBL BM652230 [ cCGGGGCGGGATGAGAAAAACGATACATCGCCGTGGGGACGTCATACTGCAGGAGAAACCGTTCGCCTGTGTGCTCGATCCGCGCTACCGCGATTCAAGATGTGACCGTTGCTTTAAGGAGACGAAGGTGATGAAGTGTTCCAACTGTCTGTACGTGCGGTACTGTGGTCGGTCCTGCCAAAAGGAGGCATGGTCCGATCATAAGGAGGAATGCGAAAAGCTGAAAGCGTTACCGCCCGGGCTGGTCGTACCGTCGGCGGCACTGATGATTGCGCGGATCGTGCGCCGCTTGCTGAAGGGAGGCGACACGCACAAGGGCTACTACACCTCGAAGCAGTACCGCAAATTCTGCGATCTTATGCCACACGAGGAAAACATTCGAGCCGACTCCAAACGGATGGAACACTTCGGTACACTGTACATGGTACTGCAGCGGCTGCTGGATGAAGCATCCCGACCGACCAAAGCGGAATTGCTCAGAATCTATGGAAAGATGTGCATCAATACGTTCAACATACTGGACGCCGAGATGAGCACGATCGGGACGGGCATGTACATCGGTGCGTCCATCATCGATCACAGCTGCCGGCCGAACGTGGCCGTTTTCGTTCGACGGTGAAACGCTCCGGATGCGCCTGCTGGAAGACTACCCCGTAGCAGGAGCTG ] [+] EMBL BM639493 [ ccGGGCGGGATGAGAAAAACGATACATCGCCGTGGGGACGTCATACTGCAGGAGAACCCGTTCGCCTGTGTGCTCGATCCGCGCTACCGCGATTCAAGATGTGACCGTTGCTTAAAGGAGACGAAGGTGATGAAGTGTTCCAACTGTCTGTACGTGCGGTACTGTGGTCGGTCCTGCCAAAAGGAGGCATGGTCCGATCATAAGGAAGAATGCGAAAAGCTGAAAGCGTTACCGCCCGGGCTGGTCGTACCGTCGGCGGCACTGATGATTGCGCGGATCGTGCGCCGCTTGCTGAAGGGAGGCGACACGCACAAGGGCTACTACACCTCGAAGCAGTACCGCAAATTCTGCGATCTTATGCCACACGAGGAAAACATTCGAGCCGACACCAAACGGATGGAGCACTTCGGTACACTGTACGTGGTACTGCAGCGGCTGCTGGATGAAGCATCCCGACCGGCCAAAGCGGAATTGCTCAGAATCTATGGAAAGATGTGCATCAATACGTTCAACATACTGGACGCCGAGATGAGCACGATCGGGACGGGCATGTACATCGGTGCGTCCATCATCGATCACAGCTGCCGGCCGAACGTGGTCG TTTCGTTCGACGGTGAAACGCTCCGGATGCGCCTGCTGGAAGACTACCCCG AGCAGGAGCTGGACTTTGGCAAGCTGTTCAT] consensusID : consensus_5860#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence [CCGGTTCCCGGTTGCAGACGAGGAAAACATTCGAGCCGACTCCAAACGGATGGAACACTTCGGTACACTGTACATGGTACTGCAGCGGCTGCTGGATGAAGCATCCCGACCGACCAAAGCGGAATTGCTCAGAATCTATGGAAAGATGTGCATCAATACGTTCAACATACTGGACGCCGAGATGAGCACGATCGGGACGGGCATGTACATCGGTGCGTCCATCATCGATCACAGCTGCTGGCCGAACGTGGCCGTTTCGTTCGACGGTGAAACGCTCCGGATGCGCCTGCTGGAAGACTACCCCGAGCAGGAGCTGGACTTTGGCAAGCTGTTCATCTCCTACATCGATCTGATCGATACGGCCGAGGTGAGGCAGGAACAGCTGGCCGAACGGTACTACTTTCACTGCGCCTGTGAACGGTGCCGGGATGAGCAGGAACAGAAGCGCATGAATGCTGCCGCCTGCCCGAACACGACCTGCCACGAACCGCTCGATTTTAGCGATTCGGAACAACTGAACCAATGCCCTGCCTGTGGTACGGCCGTAACACATTCCGACCGGGAAGCGTTCGCCGAAATTAGCAGCTTCACCCGGGACCATCTAGCGCAGATGAAAAGCGTTGCATCGACAGATCTGGACGTGAGTCGGTTGTGCTTAGAAAAGCAAGCGAACGTGCTACACCGCTACAA] [+] EMBL BM621008 [CCGGTTCCCGGTTGCAGACGAGGAAAACATTCGAGCCGACTCCAAACGGATGGAACACTTCGGTACACTGTACATGGTACTGCAGCGGCTGCTGGATGAAGCATCCCGACCGACCAAAGCGGAATTGCTCAGAATCTATGGAAAGATGTGCATCAATACGTTCAACATACTGGACGCCGAGATGAGCACGATCGGGACGGGCATGTACATCGGTGCGTCCATCATCGATCACAGCTGCTGGCCGAACGTGGCCGTTTCGTTCGACGGTGAAACGCTCCGGATGCGCCTGCTGGAAGACTACCCCGAGCAGGAGCTGGACTTTGGCAAGCTGTTCATCTCCTACATCGATCTGATCGATACGGCCGAGGTGAGGCAGGAACAGCTGGCCGAACGGTACTACTTTCACTGCGCCTGTGAACGGTGCCGGGATGAGCAGGAACAGAAGCGCATGAATGCTGCCGCCTGCCCGAACACGACCTGCCACGAACCGCTCGATTTTAGCGATTCGGAACAACTGAACCAATGCCCTGCCTGTGGTACGGCCGTAACACATTCCGACCGGGAAGCGTTCGCCGAAATTAGCAGCTTCACCCGGGACCATCTAGCGCAGATGAAAAGCGTTGCATCGACAGATCTGGACGTGAGTCGGTTGTGCTTAGAAAAGCAAGCGAACGTGCTACACCGCTACAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5860#0 CCGCAGACTCACAAGATCTCACAACACCATCGCCAGTGCGGAGAAGCATAGAGAAAACGC 60 consensus_5860#1 ------------------------------------------------------------ consensus_5860#0 CAGCAGAAAAGAAAGCGACGACTTCCTCCCCGTCGGCAAACTCTCCCATTCTTCGCTTTT 120 consensus_5860#1 ------------------------------------------------------------ consensus_5860#0 CGCTTGCCGATGTTGTTCCAGCAGTTTCACAATAACAACCACCGGTCACCGTCGGGTTGG 180 consensus_5860#1 ------------------------------------------------------------ consensus_5860#0 GTTGAACGTTATTTTTAAAATTAAACCACCACCAACAGTACCGCCACCAGCTCTACCAGC 240 consensus_5860#1 ------------------------------------------------------------ consensus_5860#0 ACTAACCGGCCCGCGAGGTGATAATTAGAACGTCGTAAAGGTTGGCCGTTGCGTGTGGCG 300 consensus_5860#1 -------------------------------------CCGGTTCCCGGTTGCAGACGAGG 23 **** * ***** * * consensus_5860#0 GAAGTCTCGAGAAGTTGGTTGTCTGTTGTGGCTGCGCTTCAGCTTCATACCGAGAGTCAA 360 consensus_5860#1 AAAACATTC--GAGCCGACTCCAAACGGATGGAACACTTCGG---TACACTGTACAT-GG 77 ** * ** * * * * * **** * * ** * * consensus_5860#0 CGTTTTATTCTGTGTTCAGTTGCGT-TGCTGACTGCGTCGGGGCGGGATGAGAAAAACGA 419 consensus_5860#1 TACTGCAGCGGCTGCTGGATGAAGCATCCCGACCG-ACCAAAGCGGAATTGCTCAGA--A 134 * * ** * * * * * *** * * **** ** * * * consensus_5860#0 TACATCGCCGTGGGGACGTCATACTGCAGGAGAAACCGTTCGCCTG--TGTGCTCGATCC 477 consensus_5860#1 TCTATGGAAAGATGTGCATCAATACGTTCAACATACTGGACGCCGAGATGAGCACGATCG 194 * ** * * * *** * * * ** * **** ** ** ***** consensus_5860#0 GCGCTACCGCGATTCAAGATGTGACCGTTGCTTTAAGGAGACGAAGGTGATGAAGTGTTC 537 consensus_5860#1 GGACGGGCATGTACATCGGTGCGTCCATCATCGATCACAGCTGCTGGCCG-AACGTGGCC 253 * * * * * ** * ** * ** * ** * *** * consensus_5860#0 CAACTGTCTGTACGTGCGGTACTGTGGTCGGTCCTGCCAAAAGGAGGCATGGTCCGATCA 597 consensus_5860#1 GTTTCGTTCGACGGTGAAACGCTCCGGATGCGCCTGCTGGAAGAC----TACCCCGAGCA 309 ** * *** ** ** * ***** *** * **** ** consensus_5860#0 TAAGGAGGAATGCGAAAAGCTGAAAGCGTTACCGCCCGGGCTGGTCG-TACCGTCG---- 652 consensus_5860#1 GGAGCTGGACTTTGGCAAGCTGTTCATCTCCTACATCGATCTGATCGATACGGCCGAGGT 369 ** *** * * ****** * ** *** *** *** * ** consensus_5860#0 GCGGCACTGATGATTGCGCGGATCGTGCGCCGCTTGCTGAAG--GGAGGCGACACGCACA 710 consensus_5860#1 GAGGCAGGAACAGCTGGCCGAACGGTACTACTTTCACTGCGCCTGTGAACGGTGCCGGGA 429 * **** * ** ** * ** * * * *** * ** * * consensus_5860#0 AGGGCTACTACACCT-CGAAGCAGTACCGCAAATTCTGCGATCTTATGCCAC-ACGAGGA 768 consensus_5860#1 TGAGCAGGAACAGAAGCGCATGAATGCTGCCGCCTGCCCGAACACGACCTGCCACGAACC 489 * ** *** ** * * * * ** * *** * * * **** consensus_5860#0 AAACATTCGAGCCGACTCCAAACGGATGGAACACTTCGGTACACTGTACATGGTACTGCA 828 consensus_5860#1 GCTCGATTTTAGCGATTCGGAACAACTGAACCAATGCCCTGC-CTGTG-GTACGGCCGTA 547 * * *** ** *** ** * ** * * * * **** * * * * consensus_5860#0 GCGGCTGCTGGATGAAGCATCCCGACCGACCAAAGCGGAATTGCTCAGAATC-TATGGAA 887 consensus_5860#1 ACACATTCCGACCGGGAAGCGTTCGCCGAAATTAGCAGCTTCACCCGGGACCATCTAGCG 607 * * * * * **** *** * * * * * * * * * * consensus_5860#0 -AGATGTGCATCAATACGTTCAACATACTGGACGCCGAGATGAGCACGATCGGGACGGGC 946 consensus_5860#1 CAGATGAAAAGCGTTGCATCGACAGATCTGGACGT-GAGTCGGTTGTGCTTAGAA-AAGC 665 ***** * * * * * * ******* *** * * * * * ** consensus_5860#0 ATGTACATCGGTGCGTCCATCATCGATCACAGCTGCCGGCCGAACGTGGCCGTTTTCGTT 1006 consensus_5860#1 AAGCGAACGTGCTACACCGCTACAA----------------------------------- 690 * * * * ** * consensus_5860#0 CGACGGTGAAACGCTCCGGATGCGCCTGCTGGAAGACTACCCCGTAGCAGGAGCTGGACT 1066 consensus_5860#1 ------------------------------------------------------------ consensus_5860#0 TTGGCAAGCTGTTCAT 1082 consensus_5860#1 ---------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||