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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5864#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1248 fasta sequence
[CCGGCGATAGCGCACGCTGCGTGTTGATCGAGACCGAGCGCGCGTCCGCGTTTTGGAAACTGTGTCAAACCCCGAGCGCTCTGTTGACGGCGCCGCAAGCACCCACCTAAAGGCCCGCGTGAACGTGGCATTTAACGGCCGAGAAGAAGCAGTGGCGTTTATCGCCGGGGGAAAATCGTTGACTTTTACCGCAACCGGCCAGGAGCACGCAGCAACATGATCAACCCGGTGGAAGCCCTTGCGAGTGCGAGCGGTGCATCCGTACCCGCCATTCGGCTCATTCTTTCCGTTCTCTTTGCCTATCCGATCGGGTCGGTCTATCGACAGCTCAAGGGTGGCGCGACGCAGCGCAATCTCTACATTGCCTTCACCGGCCTATCGATCGTGGCGTTCAACTATGGCACCGACATCTACCACAGCCTGCTGGCCGTTGCGGTTAGCTTCCTGTGCAACACCTTCCTGGGCACGAGCAGGCTGCTGGTGCCGGTGAGCTTCACCTACCATATGGGGTACTTATTAATTGGCTATTATTACACGACGAGCGATACGTACGACATCAAATGGACCATGCCGCACTGCGTGCTCGTGCTGCGGCTGATCGGGCTCGCGTTCGACCTGTCCGACAGCAGGAAGAAGGAGGCGGACGGCAAACCGGACGCCAAGTGCATTCCCGCCCCGTCGCTGCTCGAGCTGATTGCATTTACCTACTTCCCGGCCACCGTGCTCGTGGGGCCCCAGTTTAGCTTCCTGCGCTATCAGCGCTTCATTGCCGGTGCGTACGAGTCGCACACGCAGAACGCGCCGGCCTACGCGACGAAGAAGTTCCTGCAGGGCGTGTTCTATCTGGTGGTGAACCAGGTCGGCACGCAGTACGTCTCCGACGCGTACCTGATGTCGAGCGAGTTCGAGCAGGAGTCGCTCTTCATGAAGCACATCTATCTCGGGTGCTGGGGACGCATTACGCTGTACAAGTACATCTCGATTTGGCTGCTGGCGGAGGGTGCGGCCGTCATTTACGGTCTCACGTACATCGATGCAAAGCCGGGCGATCGGGAGTACTGCTCGGACGAGCTGTCCGGCTGCAGCAACATCCGCGTGGGCGTGTTCGAAAACACCAGCAAGTACGGCCACTACGTCGAGTCATTCAACGTGCAGACGAACACGTGGGTCGCCAACTACGTGTACAAGCGCTTGCGCTTCCTGAACAACCGCATGCTGTCGCATCTGGGGCGCACTGTTCTTCCTCGC]
[+] EMBL BM644879 [CCGGCGATAGCGCACGCTGCGTGTTGATCGAGACCGAGCGCGCGTCCGCGTTTTGGAAACTGTGTCAAACCCCGAGCGCTCTGTTGACGGCGCCGCAAGCACCCACCTAAAGGCCCGCGTGAACGTGGCATTTAACGGCCGAGAAGAAGCAGTGGCGTTTATCGCCGGGGGAAAATCGTTGACTTTTACCGCAACCGGCCAGGAGCACGCAGCAACATGATCAACCCGGTGGAAGCCCTTGCGAGTGCGAGCGGTGCATCCGTACCCGCCATTCGGCTCATTCTTTCCGTTCTCTTTGCCTATCCGATCGGGTCGGTCTATCGACAGCTCAAGGGTGGCGCGACGCAGCGCAATCTCTACATTGCCTTCACCGGCCTATCGATCGTGGCGTTCAACTATGGCACCGACATCTACCACAGCCTGCTGGCCGTTGCGGTTAGCTTCCTGTGCAACACCTTCCTGGGCACGAGCAGGCTGCTGGTGCCGGTGAGCTTCACCTACCATATGGGGTACTTATTAATTGGCTATTATTACACGACGAGCGATACGTACGACATCAAATGGACCATGCCGCACTGCGTGCTCGTGCTGCGGCTGATCGGGCTCGCGTTCGACCTGTCCGACAGCAGGAAGAAGGAGGCGGACGGCAAACCGGACGCCAAGTGCATTCCCG ]
[+] EMBL BM621301 [ ccgGAGCGATACGTACGACATCAAATGGACCATGCCGCACTGCGTGCTCGTGCTGCGGCTGATCGGGCTCGCGTTCGACCTGTCCGACAGCAGGAAGAAGGAGGCGGACGGCAAACCGGACGCCAAGTGCATTCCCGCCCCGTCGCTGCTCGAGCTGATTGCATTTACCTACTTCCCGGCCACCGTGCTCGTGGGGCCCCAGTTTAGCTTCCTGCGCTATCAGCGCTTCATTGCCGGTGCGTACGAGTCGCACACGCAGAACGCGCCGGCCTACGCGACGAAGAAGTTCCTGCAGGGCGTGTTCTATCTGGTGGTGAACCAGGTCGGCACGCAGTACGTCTCCGACGCGTACCTGATGTCGAGCGAGTTCGAGCAGGAGTCGCTCTTCATGAAGCACATCTATCTCGGGTGCTGGGGACGCATTACGCTGTACAAGTACATCTCGATTTGGCTGCTGGCGGAGGGTGCGGCCGTCATTTACGGTCTCACGTACATCGATGCAAAGCCGGGCGATCGGGAGTACTGCTCGGACGAGCTGTCCGGCTGCAGCAACATCCGCGTGGGCGTGTTCGAAAACACCAGCAAGTACGGCCACTACGTCGAGTCATTCAACGTGCAGACGAACACGTGGGTCGCCAACTACGTGTACAAGCGCTTGCGCTTCCTGAACAACCGCATGCTGTCGCATCTGGGGCGCACTGTTCTTCCTCGC]
consensusID : consensus_5864#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 967 fasta sequence
[CGACGAGTTGTATTCGTTGACGGCGCCGCAAGCACCCACCTAAAGGCCCGCGTGAACGTGGCATTTAACGGCCGAGAAGAAGCAGTGGCGCCCATCGCCGGGGGAAAATCGTTGACTTTTACCGCAACCGGCCAGGAGCACGCAGCAACATGATCAACCCGGTGGAAGCCCTTGCGAGTGCGAGCGGTGCATCCGTACCCGCCATTCGGCTCATTCTTTCCGTTCTCTTTGCCTATCCGACCGGGTCGGTCTATCGACAGCTCAAGGGTGGCGCGACGCAGCGCAATCTCTACATTGCCTTCACCGGCCTATCGATCGTGGCGTTCAACTATGGCACCGACATCTACCACAGCCTGCTGGCCGTTGCGGTTAGCTTCCTGTGCAACACCTTCCTGGGCACGAGCAGGCTGCTGGTGCCGGTGAGCTTCACCTACCATATGGGGTACTTATTAATTGGCTATTATTACACGACGAGCGATACGTACGACATCAAATGGACCATGCCGCACTGCGTGCTCGTGCTGCGGCTGATTGGGCTCGCGTTCGACCTGTCCGACAGCAGGAAGAAGGAGGCGGACGGCAAACCGGACGCCAAGTGCATTCCCGCCCCGTCGCTGCTCGAGCTGATTGCATTTACCTACTTCCCGGCCACCGTGCTCGTGGGGCCCCAGTTTAGCTTCCTGCGCTATCAGCCTTTCATTGCCGGTGCGTACGAGTCGCACACGCATACGTCTCCGACGCGTACCTGATGTCGAGCGAGTTCGAGCAGGAGTCGCTCTTCATGAAGCACATCTATCTCGGGTGCTGGGGACGCATTACGCTGTACAAGTACATCTCGATTTGGCTGCTGGCGGAGGGTGCGGCCGTCATTTACGGTCTCACGTACATCGATGCAAAGCCGGGCGATCGGGAGTACTGCTCGGACGAGCTGTCCGGCTGCAGCAACATCCGCGTGGGCGTGTTCGAA]
[+] EMBL CNS08SYZ [CGACGAGTTGTATTCGTTGACGGCGCCGCAAGCACCCACCTAAAGGCCCGCGTGAACGTGGCATTTAACGGCCGAGAAGAAGCAGTGGCGCCCATCGCCGGGGGAAAATCGTTGACTTTTACCGCAACCGGCCAGGAGCACGCAGCAACATGATCAACCCGGTGGAAGCCCTTGCGAGTGCGAGCGGTGCATCCGTACCCGCCATTCGGCTCATTCTTTCCGTTCTCTTTGCCTATCCGACCGGGTCGGTCTATCGACAGCTCAAGGGTGGCGCGACGCAGCGCAATCTCTACATTGCCTTCACCGGCCTATCGATCGTGGCGTTCAACTATGGCACCGACATCTACCACAGCCTGCTGGCCGTTGCGGTTAGCTTCCTGTGCAACACCTTCCTGGGCACGAGCAGGCTGCTGGTGCCGGTGAGCTTCACCTACCATATGGGGTACTTATTAATTGGCTATTATTACACGACGAGCGATACGTACGACATCAAATGGACCATGCCGCACTGCGTGCTCGTGCTGCGGCTGATTGGGCTCGCGTTCGACCTGTCCGACAGCAGGAAGAAGGAGGCGGACGGCAAACCGGACGCCAAGTGCATTCCCGCCCCGTCGCTGCTCGAGCTGATTGCATTTACCTACTTCCCGGCCACCGTGCTCGTGGGGCCCCAGTTTAGCTTCCTGCGCTATCAGCCTTTCATTGCCGGTGCGTACGAGTCGCACACGCATACGTCTCCGACGCGTACCTGATGTCGAGCGAGTTCGAGCAGGAGTCGCTCTTCATGAAGCACATCTATCTCGGGTGCTGGGGACGCATTACGCTGTACAAGTACATCTCGATTTGGCTGCTGGCGGAGGGTGCGGCCGTCATTTACGGTCTCACGTACATCGATGCAAAGCCGGGCGATCGGGAGTACTGCTCGGACGAGCTGTCCGGCTGCAGCAACATCCGCGTGGGCGTGTTCGAA]
consensusID : consensus_5864#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence
[TTGCTACATTTGCTAACAATGTTCCCCCTTTCTTGCACAGGCTATTATTCCGCGACGAGCGATACGTAGGACATCAAATGGACCATGCCGCACTGCGTGCTCGTGCTGCGGCTGATCGGGCTCGCGTTCGACCTGTCCGACAGCAGGAAGAAGGAGGCGGACGGCAAACCGGACGCCAAGTGCATTCCCGCCCCGTCGCTGCTCGAGTTGATTGCATTTACGTACTTCCCGGCCACCGTGCTCGTGGGGCCCCAGTTTAGCTTCCTGCGCTATCAGCGCTTCATTGCCGGTGCGTACGAGTCGCACACGCAGAACGCGCCGGCGTACGCGACGAAGAAGTTCCTGCAGGGCGTGTTCTATCTGGTGGTGAATCAGGTCGGCACGCAGTACGTCTCCGACGCGTACTCTGATGTCGAGCGAGTTCGAGCAGGCGGACGCGTGGGCGG]
[-] EMBL BM631489 [TTGCTACATTTGCTAACAATGTTCCCCCTTTCTTGCACAGGCTATTATTCCGCGACGAGCGATACGTAGGACATCAAATGGACCATGCCGCACTGCGTGCTCGTGCTGCGGCTGATCGGGCTCGCGTTCGACCTGTCCGACAGCAGGAAGAAGGAGGCGGACGGCAAACCGGACGCCAAGTGCATTCCCGCCCCGTCGCTGCTCGAGTTGATTGCATTTACGTACTTCCCGGCCACCGTGCTCGTGGGGCCCCAGTTTAGCTTCCTGCGCTATCAGCGCTTCATTGCCGGTGCGTACGAGTCGCACACGCAGAACGCGCCGGCGTACGCGACGAAGAAGTTCCTGCAGGGCGTGTTCTATCTGGTGGTGAATCAGGTCGGCACGCAGTACGTCTCCGACGCGTACTCTGATGTCGAGCGAGTTCGAGCAGGCGGACGCGTGGGCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5864#0 CCGGCGATAGCGCACGCTGCGTGTTGATCGAGACCGAGCGCGCGTCCGCGTTTTGGAAAC 60
consensus_5864#1 ------------------------------------------------------------
consensus_5864#2 ------------------------------------------------------------
consensus_5864#0 TGTGTCAAACCCCGAGCGCTCT--GTTGACGGCGCCGCAAGCACCCACCTAAAGGCCCGC 118
consensus_5864#1 ---------CGACGAGTTGTATTCGTTGACGGCGCCGCAAGCACCCACCTAAAGGCCCGC 51
consensus_5864#2 ------------------------------------------------------------
consensus_5864#0 GTGAACGTGGCATTTAACGGCCGAGAAGAAGCAGTGGCGTTTATCGCCGGGGGAAAATCG 178
consensus_5864#1 GTGAACGTGGCATTTAACGGCCGAGAAGAAGCAGTGGCGCCCATCGCCGGGGGAAAATCG 111
consensus_5864#2 ------------------------------------------------------------
consensus_5864#0 TTGACTTTTACCGCAACCGGCCAGGAGCACGCAGCAACATGATCAACCCGGTGGAAGCCC 238
consensus_5864#1 TTGACTTTTACCGCAACCGGCCAGGAGCACGCAGCAACATGATCAACCCGGTGGAAGCCC 171
consensus_5864#2 ------------------------------------------------------------
consensus_5864#0 TTGCGAGTGCGAGCGGTGCATCCGTACCCGCCATTCGGCTCATTCTTTCCGTTCTCTTTG 298
consensus_5864#1 TTGCGAGTGCGAGCGGTGCATCCGTACCCGCCATTCGGCTCATTCTTTCCGTTCTCTTTG 231
consensus_5864#2 ------------------------------------------------------------
consensus_5864#0 CCTATCCGATCGGGTCGGTCTATCGACAGCTCAAGGGTGGCGCGACGCAGCGCAATCTCT 358
consensus_5864#1 CCTATCCGACCGGGTCGGTCTATCGACAGCTCAAGGGTGGCGCGACGCAGCGCAATCTCT 291
consensus_5864#2 ------------------------------------------------------------
consensus_5864#0 ACATTGCCTTCACCGGCCTATCGATCGTGGCGTTCAACTATGGCACCGACATCTACCACA 418
consensus_5864#1 ACATTGCCTTCACCGGCCTATCGATCGTGGCGTTCAACTATGGCACCGACATCTACCACA 351
consensus_5864#2 ------------------------------------------------------------
consensus_5864#0 GCCTGCTGGCCGTTGCGGTTAGCTTCCTGTGCAACACCTTCCTGGGCACGAGCAGGCTGC 478
consensus_5864#1 GCCTGCTGGCCGTTGCGGTTAGCTTCCTGTGCAACACCTTCCTGGGCACGAGCAGGCTGC 411
consensus_5864#2 ------------------------------------------------------------
consensus_5864#0 TGGTGCCGGTGAGCTTCACCTACCATATGGGGTACTTATTA-ATTGGCTATTATTACACG 537
consensus_5864#1 TGGTGCCGGTGAGCTTCACCTACCATATGGGGTACTTATTA-ATTGGCTATTATTACACG 470
consensus_5864#2 ------TTGCTACATTTGCTAACAATGTTCCCCCTTTCTTGCACAGGCTATTATTCCGCG 54
* * ** * ** ** * ** ** * ********** * **
consensus_5864#0 ACGAGCGATACGTACGACATCAAATGGACCATGCCGCACTGCGTGCTCGTGCTGCGGCTG 597
consensus_5864#1 ACGAGCGATACGTACGACATCAAATGGACCATGCCGCACTGCGTGCTCGTGCTGCGGCTG 530
consensus_5864#2 ACGAGCGATACGTAGGACATCAAATGGACCATGCCGCACTGCGTGCTCGTGCTGCGGCTG 114
************** *********************************************
consensus_5864#0 ATCGGGCTCGCGTTCGACCTGTCCGACAGCAGGAAGAAGGAGGCGGACGGCAAACCGGAC 657
consensus_5864#1 ATTGGGCTCGCGTTCGACCTGTCCGACAGCAGGAAGAAGGAGGCGGACGGCAAACCGGAC 590
consensus_5864#2 ATCGGGCTCGCGTTCGACCTGTCCGACAGCAGGAAGAAGGAGGCGGACGGCAAACCGGAC 174
** *********************************************************
consensus_5864#0 GCCAAGTGCATTCCCGCCCCGTCGCTGCTCGAGCTGATTGCATTTACCTACTTCCCGGCC 717
consensus_5864#1 GCCAAGTGCATTCCCGCCCCGTCGCTGCTCGAGCTGATTGCATTTACCTACTTCCCGGCC 650
consensus_5864#2 GCCAAGTGCATTCCCGCCCCGTCGCTGCTCGAGTTGATTGCATTTACGTACTTCCCGGCC 234
********************************* ************* ************
consensus_5864#0 ACCGTGCTCGTGGGGCCCCAGTTTAGCTTCCTGCGCTATCAGCGCTTCATTGCCGGTGCG 777
consensus_5864#1 ACCGTGCTCGTGGGGCCCCAGTTTAGCTTCCTGCGCTATCAGCCTTTCATTGCCGGTGCG 710
consensus_5864#2 ACCGTGCTCGTGGGGCCCCAGTTTAGCTTCCTGCGCTATCAGCGCTTCATTGCCGGTGCG 294
******************************************* ***************
consensus_5864#0 TACGAGTCGCACACGCAGAACGCGCCGGCCTACGCGACGAAGAAGTTCCTGCAGGGCGTG 837
consensus_5864#1 TACGAGTCGCACACGCA------------------------------------------- 727
consensus_5864#2 TACGAGTCGCACACGCAG------------------------------------------ 312
*****************
consensus_5864#0 TTCTATCTGGTGGTGAACCAGGTCGGCACGCAGTACGTCTCCGACGCGTACCTGATGTCG 897
consensus_5864#1 ---------------------------------TACGTCTCCGACGCGTACCTGATGTCG 754
consensus_5864#2 ---------------------------------AACG-CGCCG--GCGTACGCGA---CG 333
*** * *** ****** ** **
consensus_5864#0 AGCGAGTTCGAGCAGGAGTCGCTCTTCATGAAGCACATCTATCTCGGGTGCTGGGGACGC 957
consensus_5864#1 AGCGAGTTCGAGCAGGAGTCGCTCTTCATGAAGCACATCTATCTCGGGTGCTGGGGACGC 814
consensus_5864#2 AAGAAGTTCCTGCAGGGCGTGTTCTATCTGGTG-----GTGAATCAGGT---CGGCACGC 385
* ***** ***** * *** ** * * ** *** ** ****
consensus_5864#0 ATTACGCTGTACAAGTACATCTCGATTTGGCTGCTGGCGGAGGGTGCGGCCGTCATTTAC 1017
consensus_5864#1 ATTACGCTGTACAAGTACATCTCGATTTGGCTGCTGGCGGAGGGTGCGGCCGTCATTTAC 874
consensus_5864#2 AGTACGTCTCCGACGCGTACTCTGATGTCGAGCGAGTTCGAGCAGGCGGACG-CGTGGGC 444
* **** * * * *** * * * *** **** ** * * *
consensus_5864#0 GGTCTCACGTACATCGATGCAAAGCCGGGCGATCGGGAGTACTGCTCGGACGAGCTGTCC 1077
consensus_5864#1 GGTCTCACGTACATCGATGCAAAGCCGGGCGATCGGGAGTACTGCTCGGACGAGCTGTCC 934
consensus_5864#2 GG---------------------------------------------------------- 446
**
consensus_5864#0 GGCTGCAGCAACATCCGCGTGGGCGTGTTCGAAAACACCAGCAAGTACGGCCACTACGTC 1137
consensus_5864#1 GGCTGCAGCAACATCCGCGTGGGCGTGTTCGAA--------------------------- 967
consensus_5864#2 ------------------------------------------------------------
consensus_5864#0 GAGTCATTCAACGTGCAGACGAACACGTGGGTCGCCAACTACGTGTACAAGCGCTTGCGC 1197
consensus_5864#1 ------------------------------------------------------------
consensus_5864#2 ------------------------------------------------------------
consensus_5864#0 TTCCTGAACAACCGCATGCTGTCGCATCTGGGGCGCACTGTTCTTCCTCGC 1248
consensus_5864#1 ---------------------------------------------------
consensus_5864#2 ---------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||