cluster # 587

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Anopheles gambiae
cluster # 587 cluster # 587 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_587#0 length = 684 sequences # 1

consensus_587#1 length = 319 sequences # 1

consensusID : consensus_587#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 684
fasta sequence

                              [CCGCGTTAGCCCAACAAAACAAAGCGATGTGCGCGCCTATTCCATGTTAGTGCTCGAAACCGGTTTGCCCCACTCGTGTGCCACTCTCACGGGTCCGTAGTAGCGTATCGATCGTAGGGAAAATGGTGGTCCAACCAAGCATACCGAAACGGATCGCATCGTGCGTAGAGAGCAGCTCGCTGCCAAAACCAAACCCTCCCCCGCCCAGCCGTACTTCAACACTGCGCGAAAAAACATACCATATCGCCATCTTTGCCTGCATTGTTTAGTTGTTTGTTTCGTCTCGTGGCCGTGTTCGTGTTCGTTGGGTTTGTTTTCTTCCCAGTTTTGCTCTACTTCCCTCCAAGATTCAAGTCCAATAAATTTGTTCCCCCGCCCCCCCTACTCGTCCCGAACTAGCCCTCGTCCCCAAACCAACAAAGCTTTCTTACAGACCATCTGTTCAGTAACGCGCGCTCGTGTGTGTGTGTGATTGTGTCTTTGTCCGTGTTTGTTTGTGCATTATTTCTTGTGGCGCTTCGTGTACGAATCTTCTACTTTTAATGCGATATCGTTTATCAAATATGTTCTTTTATTCTTACCACAACTATCCGTGTTTCAGGACCGCCGGTTGAAGTGGGAGTCACCATGTATGTGCTGTCTATCAGTTCGCTGTCTGAAGTTAAAATGGATTTCACATTGGAT]

[+] EMBL BM621198             [CCGCGTTAGCCCAACAAAACAAAGCGATGTGCGCGCCTATTCCATGTTAGTGCTCGAAACCGGTTTGCCCCACTCGTGTGCCACTCTCACGGGTCCGTAGTAGCGTATCGATCGTAGGGAAAATGGTGGTCCAACCAAGCATACCGAAACGGATCGCATCGTGCGTAGAGAGCAGCTCGCTGCCAAAACCAAACCCTCCCCCGCCCAGCCGTACTTCAACACTGCGCGAAAAAACATACCATATCGCCATCTTTGCCTGCATTGTTTAGTTGTTTGTTTCGTCTCGTGGCCGTGTTCGTGTTCGTTGGGTTTGTTTTCTTCCCAGTTTTGCTCTACTTCCCTCCAAGATTCAAGTCCAATAAATTTGTTCCCCCGCCCCCCCTACTCGTCCCGAACTAGCCCTCGTCCCCAAACCAACAAAGCTTTCTTACAGACCATCTGTTCAGTAACGCGCGCTCGTGTGTGTGTGTGATTGTGTCTTTGTCCGTGTTTGTTTGTGCATTATTTCTTGTGGCGCTTCGTGTACGAATCTTCTACTTTTAATGCGATATCGTTTATCAAATATGTTCTTTTATTCTTACCACAACTATCCGTGTTTCAGGACCGCCGGTTGAAGTGGGAGTCACCATGTATGTGCTGTCTATCAGTTCGCTGTCTGAAGTTAAAATGGATTTCACATTGGAT]




>consensus_587#0
CCGCGTTAGCCCAACAAAACAAAGCGATGTGCGCGCCTATTCCATGTTAGTGCTCGAAAC
CGGTTTGCCCCACTCGTGTGCCACTCTCACGGGTCCGTAGTAGCGTATCGATCGTAGGGA
AAATGGTGGTCCAACCAAGCATACCGAAACGGATCGCATCGTGCGTAGAGAGCAGCTCGC
TGCCAAAACCAAACCCTCCCCCGCCCAGCCGTACTTCAACACTGCGCGAAAAAACATACC
ATATCGCCATCTTTGCCTGCATTGTTTAGTTGTTTGTTTCGTCTCGTGGCCGTGTTCGTG
TTCGTTGGGTTTGTTTTCTTCCCAGTTTTGCTCTACTTCCCTCCAAGATTCAAGTCCAAT
AAATTTGTTCCCCCGCCCCCCCTACTCGTCCCGAACTAGCCCTCGTCCCCAAACCAACAA
AGCTTTCTTACAGACCATCTGTTCAGTAACGCGCGCTCGTGTGTGTGTGTGATTGTGTCT
TTGTCCGTGTTTGTTTGTGCATTATTTCTTGTGGCGCTTCGTGTACGAATCTTCTACTTT
TAATGCGATATCGTTTATCAAATATGTTCTTTTATTCTTACCACAACTATCCGTGTTTCA
GGACCGCCGGTTGAAGTGGGAGTCACCATGTATGTGCTGTCTATCAGTTCGCTGTCTGAA
GTTAAAATGGATTTCACATTGGAT

consensusID : consensus_587#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 319
fasta sequence

                              [TCCGCATGCGAAGAGCCCCTCGCTGGGTGTCCTCATACTGACACTCAACTTGGCTCTGTTCCTGCCTCAAACTATAAATAGGACGCCACCGTATGTGCTACCGGGGACCGGAGGTGGTACCATGCTCCGTGACATCGATATATCAGCCATTCTACATTCGTTCAGCGCTGGTTATGATAAAAGAGTAAGACCGAACTATGGAGGACCGCCGGGTGAAGTGGGAGTCACCATGTATGTGCTGTCTATCAGTTCGCTGTCTGAAGTTAAAATGGATTTCACATTGGATTTTTACTTCCGACAATTTTGGACTGATCCCCGT]

[+] EMBL BM624803             [TCCGCATGCGAAGAGCCCCTCGCTGGGTGTCCTCATACTGACACTCAACTTGGCTCTGTTCCTGCCTCAAACTATAAATAGGACGCCACCGTATGTGCTACCGGGGACCGGAGGTGGTACCATGCTCCGTGACATCGATATATCAGCCATTCTACATTCGTTCAGCGCTGGTTATGATAAAAGAGTAAGACCGAACTATGGAGGACCGCCGGGTGAAGTGGGAGTCACCATGTATGTGCTGTCTATCAGTTCGCTGTCTGAAGTTAAAATGGATTTCACATTGGATTTTTACTTCCGACAATTTTGGACTGATCCCCGT]




>consensus_587#1
TCCGCATGCGAAGAGCCCCTCGCTGGGTGTCCTCATACTGACACTCAACTTGGCTCTGTT
CCTGCCTCAAACTATAAATAGGACGCCACCGTATGTGCTACCGGGGACCGGAGGTGGTAC
CATGCTCCGTGACATCGATATATCAGCCATTCTACATTCGTTCAGCGCTGGTTATGATAA
AAGAGTAAGACCGAACTATGGAGGACCGCCGGGTGAAGTGGGAGTCACCATGTATGTGCT
GTCTATCAGTTCGCTGTCTGAAGTTAAAATGGATTTCACATTGGATTTTTACTTCCGACA
ATTTTGGACTGATCCCCGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_587#0      CCGCGTTAGCCCAACAAAACAAAGCGATGTGCGCGCCTATTCCATGTTAGTGCTCGAAAC 60
consensus_587#1      ------------------------------------------------------------
                                                                                 

consensus_587#0      CGGTTTGCCCCACTCGTGTGCCACTCTCACGGGTCCGTAGTAGCGTATCGATCGTAGGGA 120
consensus_587#1      ------------------------------------------------------------
                                                                                 

consensus_587#0      AAATGGTGGTCCAACCAAGCATACCGAAACGGATCGCATCGTGCGTAGAGAGCAGCTCGC 180
consensus_587#1      ------------------------------------------------------------
                                                                                 

consensus_587#0      TGCCAAAACCAAACCCTCCCCCGCCCAGCCGTACTTCAACACTGCGCGAAAAAACATACC 240
consensus_587#1      ------------------------------------------------------------
                                                                                 

consensus_587#0      ATATCGCCATCTTTGCCTGCATTGTTTAGTTGTTTGTTTCGTCTCGTGGCCGTGTTCGTG 300
consensus_587#1      ------------------------------------------------------------
                                                                                 

consensus_587#0      TTCGTTGGGTTTGTTTTCTTCCCAGTTTTGCTCTACTTCCCTCCAAGATTCAAGTCCAAT 360
consensus_587#1      ------------------------------------------------------------
                                                                                 

consensus_587#0      AAATTTGTTCCCCCGCCCCCCCTACTCGTCCCGAACTAGCCCTCGTCCCCAAAC-CAACA 419
consensus_587#1      ---------TCCGCATGCGAAGAGCCCCTCGCTGGGT-GTCCTCATACTGACACTCAACT 50
                               ** *   *      * * ** *    * * **** * *  * ** **** 

consensus_587#0      AAGCTTTCTTACAGAC-CATCTGTTCAGTAACGCGCGCTCGTGTGTGTGTGTGATTGTGT 478
consensus_587#1      TGGCTCTGTTCCTGCCTCAAACTATAAATAGGACGCCACCGTATGTGC---------TAC 101
                       *** * ** * * * **     * * **   ***   *** ****          *  

consensus_587#0      CTTTGTCCGTGTTTGTTTGTGCATTATTTCTTGTGGCGCTTCGTGTACGAATC-TTCTAC 537
consensus_587#1      CGGGGACCGGAGGTG-----GTACCATGCTCCGTGACA-TCGATATATCAGCCATTCTAC 155
                     *   * ***    **     * *  **     *** *  *   * **  *  * ******

consensus_587#0      TTTTAATGCGATATCGTTTATCAAATATGTTCTTTTATTCTTACCACAACTATCCGTGTT 597
consensus_587#1      ATTCGTT-CAGCGCTGGTTATGATAAAAG-------AGTAAGACCG-AACTATG------ 200
                      **   * *      * **** * * * *       * *   ***  ******       

consensus_587#0      TCAGGACCGCCGGTTGAAGTGGGAGTCACCATGTATGTGCTGTCTATCAGTTCGCTGTCT 657
consensus_587#1      -GAGGACCGCCGGGTGAAGTGGGAGTCACCATGTATGTGCTGTCTATCAGTTCGCTGTCT 259
                       *********** **********************************************

consensus_587#0      GAAGTTAAAATGGATTTCACATTGGAT--------------------------------- 684
consensus_587#1      GAAGTTAAAATGGATTTCACATTGGATTTTTACTTCCGACAATTTTGGACTGATCCCCGT 319
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