cluster # 5876

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Anopheles gambiae
cluster # 5876 cluster # 5876 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5876#0 length = 711 sequences # 2

consensus_5876#1 length = 434 sequences # 1
consensus_5876#2 length = 434 sequences # 1

consensusID : consensus_5876#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 711
fasta sequence

                              [ACGTTCATGTTCGAAGGGCACGACACGACGACGTCTGCGATAAGCTTTTTGCTGCACAGTTTGGCCCAAAACCCAACCATACAGGAGAAAGTGTTTGACGAGGTGAGGAACGTGGTGGGTGATGATCGTACGCGTCCGGTCACCATGGCGATGCTGAACGATATGCACTATCTGGATCTGGTGATCAAGGAGACGCTTCGGCTGTACCCGTCGGTGCCAATGATTGGCAGGAAGATGCAGCAAACGGCCGAAATCAATGGAAAGATCATCCCAGCCGGTGCCAACCTGATCATTATGCCGTTCTTCCTCGGCCGTGAGGCACGCTACTTCCCCGAGCCGGAGAAGTTCGATCCGGAACGATTCAACGTGGAACGATCGGCCGAGAAGACGAACCCTTACCAGTACATTCCATTCTCCGCCGGCCCACGCAACTGCATCGGGCAGAAGTTTGCCGTGGCTGAGCTGAAGAGTTTGGTTAGCAAAGTGTTGCGCCATTACGAGATTTTACCACCGACCGGGAAGCAGGACGAATCGTTCATTGCGGAACTAATCCTGCGACCGGAGCATGGTGTGTTTGTGCGGTTGAAGCCACGGGCGTACTAGGGAGGGGAAGACATAATCTCCGTATGTGATATGTACAGCTGAGGGAAGTTGTTGATGTGATAAAAAAGCTTTTGATTTGATTGTTACTGGTTGCATTTTGTGGTGCAA]

[+] EMBL AY062196             [ACGTTCATGTTCGAAGGGCACGACACGACGACGTCTGCGATAAGCTTTTTGCTGCACAGTTTGGCCCAAAACCCAACCATACAGGAGAAAGTGTTTGACGAGGTGAGGAACGTGGTGGGTGATGATCGTACGCGTCCGGTCACCATGGCGATGCTGAACGATATGCACTATCTGGATCTGGTGATCAAGGAGACGCTTCGGCTGTACCCGTCGGTGCCAATGATTGGCAGGAAGATGCAGCAAACGGCCGAAATCAATGGAAAGATCATCCCAGCCGGTGCCAACCTGATCATTATGCCGTTCTTCCTCGGCCGTGAGGCACGCTACTTCCCCGAGCCGGAGAAGTTCGATCCGGAACGATTCAACGTGGAACGATCGGCCGAGAAGACGAACCCTTACCAGTACATTCCATTCTCCGCCGGCCCACGCAACTG                                                                                                                                                                                                                                                                                     ]
[+] EMBL BM623873             [                                                   ccGCACAGTTTGGCCCAAAACCCAACCATACAGGAGAAGGTGTTTGATGAGGTGAGGAACGTGGTGGGCGATGATCGTACGCGTCCTGTCACCATGGCGATGCTGAACGATATGAGCTATCTGGATCTGGTGATCAAGGAGACGCTTCGGCTGTACCCGTCGGTGCCAATGATTGGAAGGAAGATGCAGGAAACGACCGAAATCAATGGAAAGATCATCCCAGCCGGTGCCAACCTGATCATTACTCCGTTCTTCCTCGGTCGTGAGGCACGCTACTTCCCCGAGCCGGAGAAGTTCGATCCGGAACGGTTCAATGTGGAACGGTCGGCCGAGAAGACGAACCCGTACCAGTACATTCCGTTCAGTGCTGGACCGCGGAACTGCATCGGGCAGAAGTTTGCCGTGGCTGAGCTGAAGAGTTTGGTTAGCAAAGTGTTGCGCCATTACGAGATTTTACCACCGACCGGGAAGCAGGACGAATCGTTCATTGCGGAACTAATCCTGCGACCGGAGCATGGTGTGTTTGTGCGGTTGAAGCCACGGGCGTACTAGGGAGGGGAAGACATAATCTCCGTATGTGATATGTACAGCTGAGGGAAGTTGTTGATGTGATAAAAAAGCTTTTGATTTGATTGTTACTGGTTGCATTTTGTGGTGCAA]




>consensus_5876#0
ACGTTCATGTTCGAAGGGCACGACACGACGACGTCTGCGATAAGCTTTTTGCTGCACAGT
TTGGCCCAAAACCCAACCATACAGGAGAAAGTGTTTGACGAGGTGAGGAACGTGGTGGGT
GATGATCGTACGCGTCCGGTCACCATGGCGATGCTGAACGATATGCACTATCTGGATCTG
GTGATCAAGGAGACGCTTCGGCTGTACCCGTCGGTGCCAATGATTGGCAGGAAGATGCAG
CAAACGGCCGAAATCAATGGAAAGATCATCCCAGCCGGTGCCAACCTGATCATTATGCCG
TTCTTCCTCGGCCGTGAGGCACGCTACTTCCCCGAGCCGGAGAAGTTCGATCCGGAACGA
TTCAACGTGGAACGATCGGCCGAGAAGACGAACCCTTACCAGTACATTCCATTCTCCGCC
GGCCCACGCAACTGCATCGGGCAGAAGTTTGCCGTGGCTGAGCTGAAGAGTTTGGTTAGC
AAAGTGTTGCGCCATTACGAGATTTTACCACCGACCGGGAAGCAGGACGAATCGTTCATT
GCGGAACTAATCCTGCGACCGGAGCATGGTGTGTTTGTGCGGTTGAAGCCACGGGCGTAC
TAGGGAGGGGAAGACATAATCTCCGTATGTGATATGTACAGCTGAGGGAAGTTGTTGATG
TGATAAAAAAGCTTTTGATTTGATTGTTACTGGTTGCATTTTGTGGTGCAA

consensusID : consensus_5876#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 434
fasta sequence

                              [ACGTTCATGTTCGAGGGGCACGACACGACAACGTCCGCTATTAGCTTTATGCTCCACAGTTTGGCCCAAAACCCGGACGTCCAGGAGAAAGCGTTCAACGAGGTGCGCAATATCGTTGGCGATGATCGCAAACAGCCGGTTACTATGGCGATGCTGAACGATATGCACTACTTGGATCTGGTGATCAAAGAGACGCTTCGGCTGTACCCGTCGGTGCCACTGTTTGGAAGGAAAATGTTGCAGAATACGGAAATTAATGGTAAAATATTCCCCGCCGGCAGCAATGTGATAGTGCTGCCGTTCTTTATGGGCCGCGATCCGGACTGTTTTGCCAATCCGGAGAAGTTCGATCCGGAACGGTTCAACGTCGAGCGGTCGGCCGAGAAGACGAACCCTTACCAGTACATTCCGTTCACGGCCGGCCCACGCAACTG]

[+] EMBL AY062193             [ACGTTCATGTTCGAGGGGCACGACACGACAACGTCCGCTATTAGCTTTATGCTCCACAGTTTGGCCCAAAACCCGGACGTCCAGGAGAAAGCGTTCAACGAGGTGCGCAATATCGTTGGCGATGATCGCAAACAGCCGGTTACTATGGCGATGCTGAACGATATGCACTACTTGGATCTGGTGATCAAAGAGACGCTTCGGCTGTACCCGTCGGTGCCACTGTTTGGAAGGAAAATGTTGCAGAATACGGAAATTAATGGTAAAATATTCCCCGCCGGCAGCAATGTGATAGTGCTGCCGTTCTTTATGGGCCGCGATCCGGACTGTTTTGCCAATCCGGAGAAGTTCGATCCGGAACGGTTCAACGTCGAGCGGTCGGCCGAGAAGACGAACCCTTACCAGTACATTCCGTTCACGGCCGGCCCACGCAACTG]




>consensus_5876#1
ACGTTCATGTTCGAGGGGCACGACACGACAACGTCCGCTATTAGCTTTATGCTCCACAGT
TTGGCCCAAAACCCGGACGTCCAGGAGAAAGCGTTCAACGAGGTGCGCAATATCGTTGGC
GATGATCGCAAACAGCCGGTTACTATGGCGATGCTGAACGATATGCACTACTTGGATCTG
GTGATCAAAGAGACGCTTCGGCTGTACCCGTCGGTGCCACTGTTTGGAAGGAAAATGTTG
CAGAATACGGAAATTAATGGTAAAATATTCCCCGCCGGCAGCAATGTGATAGTGCTGCCG
TTCTTTATGGGCCGCGATCCGGACTGTTTTGCCAATCCGGAGAAGTTCGATCCGGAACGG
TTCAACGTCGAGCGGTCGGCCGAGAAGACGAACCCTTACCAGTACATTCCGTTCACGGCC
GGCCCACGCAACTG

consensusID : consensus_5876#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 434
fasta sequence

                              [ACGTTCATGTTCGARGGGCACGACACGACCACGTCTGCGATAAGCTTTTTGCTGCAGAATCTAGCAAAGCATCCCGCAATTCAGCAGAAAGTGTTTGATGAGGTGAGGAACGTGGTGGGCGATGATCGTACGCGCCCCGTTACCATAGCGATGCTGAACGACATGCACTATCTGGATCTGGTGATCAAGGAGACGCTTCGGCTGTACCCATCGGTGCCAATGTTTGGGCGTAAAATGATGGAAGATGCTGAAATAAATGGAAAAGTGTTTCCCGCTGGGTCGAATACGATCATACTGCCGTTCTTCCTTGGCCGCAATCCCGAGTTCTTCCCAAACCCGGAAAAGTTCGACCCGGAGCGATTTAACGTGGAAACGTCGGCCGAAAAGACGAACCCCTACCAGTACGTTCCATTCTCCGCCGGCCCCCGCAACTG]

[+] EMBL AY062194             [ACGTTCATGTTCGARGGGCACGACACGACCACGTCTGCGATAAGCTTTTTGCTGCAGAATCTAGCAAAGCATCCCGCAATTCAGCAGAAAGTGTTTGATGAGGTGAGGAACGTGGTGGGCGATGATCGTACGCGCCCCGTTACCATAGCGATGCTGAACGACATGCACTATCTGGATCTGGTGATCAAGGAGACGCTTCGGCTGTACCCATCGGTGCCAATGTTTGGGCGTAAAATGATGGAAGATGCTGAAATAAATGGAAAAGTGTTTCCCGCTGGGTCGAATACGATCATACTGCCGTTCTTCCTTGGCCGCAATCCCGAGTTCTTCCCAAACCCGGAAAAGTTCGACCCGGAGCGATTTAACGTGGAAACGTCGGCCGAAAAGACGAACCCCTACCAGTACGTTCCATTCTCCGCCGGCCCCCGCAACTG]




>consensus_5876#2
ACGTTCATGTTCGARGGGCACGACACGACCACGTCTGCGATAAGCTTTTTGCTGCAGAAT
CTAGCAAAGCATCCCGCAATTCAGCAGAAAGTGTTTGATGAGGTGAGGAACGTGGTGGGC
GATGATCGTACGCGCCCCGTTACCATAGCGATGCTGAACGACATGCACTATCTGGATCTG
GTGATCAAGGAGACGCTTCGGCTGTACCCATCGGTGCCAATGTTTGGGCGTAAAATGATG
GAAGATGCTGAAATAAATGGAAAAGTGTTTCCCGCTGGGTCGAATACGATCATACTGCCG
TTCTTCCTTGGCCGCAATCCCGAGTTCTTCCCAAACCCGGAAAAGTTCGACCCGGAGCGA
TTTAACGTGGAAACGTCGGCCGAAAAGACGAACCCCTACCAGTACGTTCCATTCTCCGCC
GGCCCCCGCAACTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5876#0      ACGTTCATGTTCGAAGGGCACGACACGACGACGTCTGCGATAAGCTTTTTGCTGCACAGT 60
consensus_5876#2      ACGTTCATGTTCGARGGGCACGACACGACCACGTCTGCGATAAGCTTTTTGCTGCAGAAT 60
consensus_5876#1      ACGTTCATGTTCGAGGGGCACGACACGACAACGTCCGCTATTAGCTTTATGCTCCACAGT 60
                      ************** ************** ***** ** ** ****** **** ** * *

consensus_5876#0      TTGGCCCAAAACCCAACCATACAGGAGAAAGTGTTTGACGAGGTGAGGAACGTGGTGGGT 120
consensus_5876#2      CTAGCAAAGCATCCCGCAATTCAGCAGAAAGTGTTTGATGAGGTGAGGAACGTGGTGGGC 120
consensus_5876#1      TTGGCCCAAAACCCGGACGTCCAGGAGAAAGCGTTCAACGAGGTGCGCAATATCGTTGGC 120
                       * **  *  * **     * *** ****** ***  * ****** * **  * ** ** 

consensus_5876#0      GATGATCGTACGCGTCCGGTCACCATGGCGATGCTGAACGATATGCACTATCTGGATCTG 180
consensus_5876#2      GATGATCGTACGCGCCCCGTTACCATAGCGATGCTGAACGACATGCACTATCTGGATCTG 180
consensus_5876#1      GATGATCGCAAACAGCCGGTTACTATGGCGATGCTGAACGATATGCACTACTTGGATCTG 180
                      ******** *  *  ** ** ** ** ************** ********  ********

consensus_5876#0      GTGATCAAGGAGACGCTTCGGCTGTACCCGTCGGTGCCAATGATTGGCAGGAAGATGCAG 240
consensus_5876#2      GTGATCAAGGAGACGCTTCGGCTGTACCCATCGGTGCCAATGTTTGGGCGTAAAATGATG 240
consensus_5876#1      GTGATCAAAGAGACGCTTCGGCTGTACCCGTCGGTGCCACTGTTTGGAAGGAAAATGTTG 240
                      ******** ******************** ********* ** ****  * ** ***  *

consensus_5876#0      CAAACGGCCGAAATCAATGGAAAGATCATCCCAGCCGGTGCCAACCTGATCATTATGCCG 300
consensus_5876#2      GAAGATGCTGAAATAAATGGAAAAGTGTTTCCCGCTGGGTCGAATACGATCATACTGCCG 300
consensus_5876#1      CAGAATACGGAAATTAATGGTAAAATATTCCCCGCCGGCAGCAATGTGATAGTGCTGCCG 300
                       *     * ***** ***** **  *  * ** ** **    **   ***  *  *****

consensus_5876#0      TTCTTCCTCGGCCGTGAGGCACGCTACTTCCCCGAGCCGGAGAAGTTCGATCCGGAACGA 360
consensus_5876#2      TTCTTCCTTGGCCGCAATCCCGAGTTCTTCCCAAACCCGGAAAAGTTCGACCCGGAGCGA 360
consensus_5876#1      TTCTTTATGGGCCGCGATCCGGACTGTTTTGCCAATCCGGAGAAGTTCGATCCGGAACGG 360
                      *****  * *****  *  *    *  **  *  * ***** ******** ***** ** 

consensus_5876#0      TTCAACGTGGAACGATCGGCCGAGAAGACGAACCCTTACCAGTACATTCCATTCTCCGCC 420
consensus_5876#2      TTTAACGTGGAAACGTCGGCCGAAAAGACGAACCCCTACCAGTACGTTCCATTCTCCGCC 420
consensus_5876#1      TTCAACGTCGAGCGGTCGGCCGAGAAGACGAACCCTTACCAGTACATTCCGTTCACGGCC 420
                      ** ***** **    ******** *********** ********* **** *** * ***

consensus_5876#0      GGCCCACGCAACTGCATCGGGCAGAAGTTTGCCGTGGCTGAGCTGAAGAGTTTGGTTAGC 480
consensus_5876#2      GGCCCCCGCAACTG---------------------------------------------- 434
consensus_5876#1      GGCCCACGCAACTG---------------------------------------------- 434
                      ***** ********                                              

consensus_5876#0      AAAGTGTTGCGCCATTACGAGATTTTACCACCGACCGGGAAGCAGGACGAATCGTTCATT 540
consensus_5876#2      ------------------------------------------------------------
consensus_5876#1      ------------------------------------------------------------
                                                                                  

consensus_5876#0      GCGGAACTAATCCTGCGACCGGAGCATGGTGTGTTTGTGCGGTTGAAGCCACGGGCGTAC 600
consensus_5876#2      ------------------------------------------------------------
consensus_5876#1      ------------------------------------------------------------
                                                                                  

consensus_5876#0      TAGGGAGGGGAAGACATAATCTCCGTATGTGATATGTACAGCTGAGGGAAGTTGTTGATG 660
consensus_5876#2      ------------------------------------------------------------
consensus_5876#1      ------------------------------------------------------------
                                                                                  

consensus_5876#0      TGATAAAAAAGCTTTTGATTTGATTGTTACTGGTTGCATTTTGTGGTGCAA 711
consensus_5876#2      ---------------------------------------------------
consensus_5876#1      ---------------------------------------------------