These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5880#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 836 fasta sequence [TGCTTCGAGGGGCCCAAAAAGCTGCGGAATTCCTCGAGGACTGTTGGCCTACTGAAAACAAAAAAAACATACCTGCGCCGTAGTGCGGGGCTGGAGAGAAATCATCGCGAAATGATAAAAAAAACTCGTAGACATACAATGTAAAGAAAAGGCCCCCTATCCCCCCCTGTGGCAGTGTGAATGAGAAACAAAAGTCCAAAGAAAGCATTGCGCCTCCCATCCTCGTTTGCAGCCGCTCGGAGAGAGAACTGAGTAAACAGCTGATGCAGACACCCAAGCCCATCCTGCAGTTAGGGTTTGTAGGTATATATGATACAGAAAATTGAAACAAAAACACTAGAAAAAACAGGGGAGGGTCGTATTTCGTCGGTGTCATTGGTAAAGCAACCACTACCATCAAAATTGGTTTTTGGTCGGATTTTTGTAGTCGGCAAAGATAGTAAAGAAACGTATCGATAACTTGATCGGGTTGTACATTTACTTTATTGGGAACACGATTAAAAACATCCGTACGCGGCTCTCTGACCTTTTCCCCCCCGATGCTGTTGGCATGGCCCTGTACGCGCGCTCATGATCCGCAAGGATATGGCGGCTGCTGTGTGCGAATGCCGTTTGGTTTTTTTTTTTTTCGTTTTTCTTTTCGGCTACAAATCCCGCTTCGGTGTGATTCATTTTCCACTTTTTCCGCTCTCGATTCTCGCTGAACGTCACGTCCGGCCGTTTGCCCGAGATGTTCCTCACACACACTAGGGATGGGGAAAACAAAACAAATCCGATTAAATTCTAAATTTAACGACTCAAAGTCATCGTAGCGAATGTTAGTGCAATTGCATTAT] [-] EMBL CNS08KHW [TGCTTCGAGGGGCCCAAAAAGCTGCGGAATTCCTCGAGGACTGTTGGCCTACTGAAAACAAAAAAAACATACCTGCGCCGTAGTGCGGGGCTGGAGAGAAATCATCGCGAAATGATAAAAAAAACTCGTAGACATACAATGTAAAGAAAAGGCCCCCTATCCCCCCCTGTGGCAGTGTGAATGAGAAACAAAAGTCCAAAGAAAGCATTGCGCCTCCCATCCTCGTTTGCAGCCGCTCGGAGAGAGAACTGAGTAAACAGCTGATGCAGACACCCAAGCCCATCCTGCAGTTAGGGTTTGTAGGTATATATGATACAGAAAATTGAAACAAAAACACTAGAAAAAACAGGGGAGGGTCGTATTTCGTCGGTGTCATTGGTAAAGCAACCACTACCATCAAAATTGGTTTTTGGTCGGATTTTTGTAGTCGGCAAAGATAGTAAAGAAACGTAT ] [+] EMBL BX616782 [ CAATGTAAAGAAAAGGCCCCCTATCCCCCCATGTGGCAGTGTGAACGAGAAACAAAAGTCCAAATAAAGCATTGCGCCTCCCATCCTCGTTTGCAGCCGCTTGGAGAGAGAACTGAGTAAACAGCTGATGCAGACACCCAAGCCCATCCTGCAGTTAGGGTTTGTAGGTATATATGATACAGAAAATTGAAACAAAAACACTAGAAAACACAGGGGAGGGTCGTATTTCGTCGGTGTCATTGGTAAAGCAACGACTACCATCAAAATTGGTTTTTGGTCGGATTTTTGTAGTCGGCAAAGATAGTAAAGAAACGTATCGATAACTTGATCGGGTTGTACATTTACTTTATTGGGAACACGATTAAAAACATCCGTACGCGGCTCTCTGACCTTTTCCCCCCCGATGCTGTTGGCATGGCCCTGTACGCGCGCTCATGATCCGCAAGGATATGGCGGCTGCTGTGTGCGAATGCCGTTTGGTTTTTTTTTTTTTCGTTTTTCTTTTCGGCTACAAATCCCGCTTCGGTGTGATTCATTTTCCACTTTTTCCGCTCTCGATTCTCGCTGAACGTCACGTCCGGCCGTTTGCCCGAGATGTTCCTCACACACACTAGGGATGGGGAAAACAAAACAAATCCGATTAAATTCTAAATTTAACGACTCAAAGTCATCGTAGCGAATGTTAGTGCAATTGCATTAT] consensusID : consensus_5880#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 428 fasta sequence [GATCGCACGAGGGTGAAGTATGAAAAGAGAGAGAGAGACAGAAGTATGATAAAAGAGAGAGAGAGAGAAGTATGAAAAAGTATCTAAATTTGATTACGGGCTAGTAGTGATCGTTTATCCTAATTTTGTTTACCTTTCTCTTCCCTCTCACACACACACACACTAGGATGGGGAAAACAAAACAAATCCGATTAAATTCTAAATTTAACGACTCAAAGTCATCGTAGCGAATGTTAGTGCAATTGCATTATTTGGCAGGCTGCGAAAGTAAGCCGAGGNTGTTGTGTCGAGAANAAAGAGGGTAAAAGAATAANTAGCTAAACAAAATTTAACCAGTGAACCACGAAATGGGCTGATTGAACGATAAAATGCGATAAATACGGGAAGAGTAAACTTGCAGAACACGCACTGCACAAGCATGCGTACCG] [+] EMBL BX466559 [GATCGCACGAGGGTGAAGTATGAAAAGAGAGAGAGAGACAGAAGTATGATAAAAGAGAGAGAGAGAGAAGTATGAAAAAGTATCTAAATTTGATTACGGGCTAGTAGTGATCGTTTATCCTAATTTTGTTTACCTTTCTCTTCCCTCTCACACACACACACACTAGGATGGGGAAAACAAAACAAATCCGATTAAATTCTAAATTTAACGACTCAAAGTCATCGTAGCGAATGTTAGTGCAATTGCATTATTTGGCAGGCTGCGAAAGTAAGCCGAGGNTGTTGTGTCGAGAANAAAGAGGGTAAAAGAATAANTAGCTAAACAAAATTTAACCAGTGAACCACGAAATGGGCTGATTGAACGATAAAATGCGATAAATACGGGAAGAGTAAACTTGCAGAACACGCACTGCACAAGCATGCGTACCG] consensusID : consensus_5880#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 268 fasta sequence [CCGCGGACGCGTGGGTTTTTTTATATCTTTCTATCTCTCTCTATCTCTCTCTATCTCTCTCTATATCTCTTTTCCTCTCTATCTCTCTTTTCTCTCTCTCTCTCTCTCATCGCGAAATGATAAAAAAAACTCGTAGACATACAAAGCAAAGAAAAGGCCCCCTATCCCCCCATGTGGCAGTGTGAATGAGAAACAAAAGACCAAAGAAAGCATTGCGCCTCCCATCCTCGTTTGCAGCCGCTCGGAGAGAGAACTGAGTAAACAGCTG] [+] EMBL BM624415 [CCGCGGACGCGTGGGTTTTTTTATATCTTTCTATCTCTCTCTATCTCTCTCTATCTCTCTCTATATCTCTTTTCCTCTCTATCTCTCTTTTCTCTCTCTCTCTCTCTCATCGCGAAATGATAAAAAAAACTCGTAGACATACAAAGCAAAGAAAAGGCCCCCTATCCCCCCATGTGGCAGTGTGAATGAGAAACAAAAGACCAAAGAAAGCATTGCGCCTCCCATCCTCGTTTGCAGCCGCTCGGAGAGAGAACTGAGTAAACAGCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5880#0 ----TGCTTCGAGGGGCCCA--AAAAGCTGCGGAATTCCTCGAGGACTGTTGGCCTACTG 54 consensus_5880#2 CCGCGGACGCGTGGGTTTTTTTATATCTTTCTATCTCTCTCTATCTCTCTCTATCT-CTC 59 consensus_5880#1 ------------------------------------------------------------ consensus_5880#0 AAAACAAAAAAAACATACCTGCGCCGTAGTGCGGGGCTGGAGAGAAATCATCGCGAAATG 114 consensus_5880#2 TCTATATCTCTTTTCCTCTCTATCTCTCTTTTCTCTCTCTCTCTCTCTCATCGCGAAATG 119 consensus_5880#1 ----------GATCGCACGAGGG-TGAAGTATGAAAAGAGAGAGAGAG-ACAGAAGTATG 48 * * * * *** consensus_5880#0 ATAAAAAAAACTCGTAGACATACAATGTAAAGAAAAGGCCCCCTATCCCCCCCTGTGGCA 174 consensus_5880#2 ATAAAAAAAACTCGTAGACATACAAAGCAAAGAAAAGGCCCCCTATCCCCCCATGTGGCA 179 consensus_5880#1 ATAAAAGAGAG----AGAGAGAGAA-GTATGAAAAAGTATCTAAATTTGATTACGGGCTA 103 ****** * * *** * * ** * * ***** * ** * * * consensus_5880#0 GT-GTGAATGAGAAACAAAAGTCCAAAGAAAGCATTGCGCCTCCCATCCTCGTTTGCAGC 233 consensus_5880#2 GT-GTGAATGAGAAACAAAAGACCAAAGAAAGCATTGCGCCTCCCATCCTCGTTTGCAGC 238 consensus_5880#1 GTAGTGATCGTTTATCCTAATTTT---GTTTACCTTTCTCTTCCCTCTCACACACACACA 160 ** **** * * * ** * * ** * * **** * * ** consensus_5880#0 CGCTCGGAGAGAGAACTGAGTAAACAGCTGATGCAGACACCCAAGCCCATCCTGCAGTTA 293 consensus_5880#2 CGCTCGGAGAGAGAACTGAGTAAACAGCTG------------------------------ 268 consensus_5880#1 CACTAGGATGGGGAAAACAAAACAAATCCGAT-TAAATTCTAAATTTAACGACTCAA--A 217 * ** *** * *** * * * * * * consensus_5880#0 GGGTTTGTAGGTATATATGATACAGAAAATTGAAACAAAAACACTAGAAAAAACAGGGGA 353 consensus_5880#2 ------------------------------------------------------------ consensus_5880#1 GTCATCGTAGCGAATGTTAGTGCAATTGCATTATTTGGCAG-GCTGCGAAAGTAAGCCGA 276 consensus_5880#0 GGGTCGTATTTCGTCGGTGTCATTGGTAAAGCAACCACTACCATCAAAATTGGTTTTTGG 413 consensus_5880#2 ------------------------------------------------------------ consensus_5880#1 GGNTGTTGTGTCGAGAANAAAGAGGGTAAAAGAATAANTAGC--TAAACAAAATTTAACC 334 consensus_5880#0 TCGGATTTTTGTAGTCGGCAAAGATAGTAAAGAAACGTATCGATAACTTGATCGGGTTGT 473 consensus_5880#2 ------------------------------------------------------------ consensus_5880#1 AGTGAACCACGAAATGGGCTGATTGAACGATAAAATGCGATAAATACGGGA--AGAGTAA 392 consensus_5880#0 ACATTTACTTTATTGGGAACACGATTAAAAACATCCGTACGCGGCTCTCTGACCTTTTCC 533 consensus_5880#2 ------------------------------------------------------------ consensus_5880#1 ACTTGCAGAACACGCACTGCACAAGCATGCGTACCG------------------------ 428 consensus_5880#0 CCCCCGATGCTGTTGGCATGGCCCTGTACGCGCGCTCATGATCCGCAAGGATATGGCGGC 593 consensus_5880#2 ------------------------------------------------------------ consensus_5880#1 ------------------------------------------------------------ consensus_5880#0 TGCTGTGTGCGAATGCCGTTTGGTTTTTTTTTTTTTCGTTTTTCTTTTCGGCTACAAATC 653 consensus_5880#2 ------------------------------------------------------------ consensus_5880#1 ------------------------------------------------------------ consensus_5880#0 CCGCTTCGGTGTGATTCATTTTCCACTTTTTCCGCTCTCGATTCTCGCTGAACGTCACGT 713 consensus_5880#2 ------------------------------------------------------------ consensus_5880#1 ------------------------------------------------------------ consensus_5880#0 CCGGCCGTTTGCCCGAGATGTTCCTCACACACACTAGGGATGGGGAAAACAAAACAAATC 773 consensus_5880#2 ------------------------------------------------------------ consensus_5880#1 ------------------------------------------------------------ consensus_5880#0 CGATTAAATTCTAAATTTAACGACTCAAAGTCATCGTAGCGAATGTTAGTGCAATTGCAT 833 consensus_5880#2 ------------------------------------------------------------ consensus_5880#1 ------------------------------------------------------------ consensus_5880#0 TAT 836 consensus_5880#2 --- consensus_5880#1 --- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||