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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5887#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 803 fasta sequence
[CCGCCGACTGTGTGCGCACGCTCAAGAAGAGCTGCGAGGAGTTCAAGGAGAACCAGGTCCGGGATACCACGATCTGGAAGTACAAGGACGAGCTGATACAGCGCACGCGCCGCACGCTCGATGTGCTCGGGTTCTTCAAGCCGTCCACGGCGGGGGGCGGTGGCGGAGGTGGGTCGCTGTTGCGCGGTGGCAAGGACTCGCTCTACAAGCGGTGACTGTTGGCACGGGTCCGCAGTCTGTTCAGTCTCTAGTAGCAGCGCGAACTGTGAGCTGTTGTGTGCCGCATACACACCACTGTTACTACTACTTTCCTAGTGTCACTACTATTACAATTACTACTACTACTTCGACTACTACCAGTACGAACGTAAGGCTTTTAGGTTAGTTAGGGACGAGAACGAGTTGGTGCGGAGAAGCAGGCGCAATTGTATAAAGTGAATACTCCATTCGAGGGAACGGTGGGTTCGTAGTGAGAGGGATAGTAACTATTTTAAGTGCTCTAGAAGAATCGTCGGGGCGTGTTCTGACGTGTTCGAACCTATTCAGAAACAAAACAGTAGCCAGAGACTGTTTGAAACGGGTTGAACCTATGAGGCCTTCCCGCTAAACCTGGCTCGGACTGTATGAGTGTATGTTTGTTGTGTGCGTTCGCGCGTGTGTGTGTGTATAACCTGTGTGATCACGTAGCTAAGTAGGTTTGTGATAGTCACACTGTCATCGTCTGTTCGATCGTCCGGGGGAATGAACGAGCTTGTATGGATGAGTATTGCGTGGTTGCGAACTGTACAAAGTAATATCAGTGT]
[+] EMBL BM641515 [CCGCCGACTGTGTGCGCACGCTCAAGAAGAGCTGCGAGGAGTTCAAGGAGAACCAGGTCCGGGATACCACGATCTGGAAGTACAAGGACGAGCTGATACAGCGCACGCGCCGCACGCTCGATGTGCTCGGGTTCTTCAAGCCGTCCACGGCGGGGGGCGGTGGCGGAGGTGGGTCGCTGTTGCGCGGTGGCAAGGACTCGCTCTACAAGCGGTGACTGTTGGCACGGGTCCGCAGTCTGTTCAGTCTCTAGTAGCAGCGCGAACTGTGAGCTGTTGTGTGCCGCATACACACCACTGTTACTACTACTTTCCTAGTGTCACTACTATTACAATTACTACTACTACTTCGACTACTACCAGTACGAACGTAAGGCTTTTAGGTTAGTTAGGGACGAGAACGAGTTGGTGCGGAGAAGCAGGCGCAATTGTATAAAGTGAATACTCCATTCGAGGGAACGGTGGGTTCGTAGTGAGAGGGATAGTAACTATTTTAAGTGCTCTAGAAGAATCGTCGGGGCGTGTTCTGACGTGTTCGAACCTATTCAGAAACAAAACAGTAGCCAGAGACTGTTTGAAACGGGTTGAACCTATGAGGCCTTCCCGCTAAACCTGGCTCGGACTGTATGAGTGTATGTTTGTTGTGTGCGTTCGCGCGTGTGTGTGTGTA ]
[+] EMBL BM625739 [ ccgGCGGTGACTGTTGGCACGGGTCCGCAGTCTGTTCAGTCTCTAGTAGCAGCGCGAACTGTGAGCTGTTGTGTGCCGCATACACACCACTGTTACTACTACTTTCCTAGTGTCACTACTATTACAATTACTACTACTACTTCGACTACTACCAGTACGAACGTAAGGCTTTTAGGTTAGTTAGGGACGAGAACGAGTTGGTGCGGAGAAGCAGGCGCAATTGTATAAAGTGAATACTCCATTCGAGGGAACGGTGGGTTCGTAGTGAGAGGGATAGTAACTATTTTAAGTGCTCTAGAAGAATCGTCGGGGCGTGTTCTGACGTGTTCGAACCTATTCAGAAACAAAACAGTAGCCAGAGACTGTTTGAAACGGGTTGAACCTATGAGGCCTTCCCGCTAAACCTGGCTCGGACTGTATGAGTGTATGTTTGTTGTGTGCGTTCGCGCGTGTGTGTGTGTATAACCTGTGTGATCACGTAGCTAAGTAGGTTTGTGATAGTCACACTGTCATCGTCTGTTCGATCGTCCGGGGGAATGAACGAGCTTGTATGGATGAGTATTGCGTGGTTGCGAACTGTACAAAGTAATATCAGTGT]
consensusID : consensus_5887#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 684 fasta sequence
[GCAGAATCGGCACGTAGGGTGTGTGTGTGTGTATAACCTGTGTGATCACGTAGCTAAGTAGGTTTGTGATAGTCACACTGTCATCGTCTGTTCGATCGTCCGGGGGAATGAAAGAGCTTGTATGGATGAGTATTGCGTGGTTGCGAACTGTACAAAGTAATATCAGTATGGATGAGTGTAGCACAGTACCAGAGGACTACGAGTTAGCAAACGGACTGGAGTCTCATTCCAGGTTCCTCACCACCAGAGGGAGGGTCTCTCCTACTTCATTTCGATGCGGCTCGCTTAAAGAAAACAAACCCAGATTATTCACAGTAGGCTGGTGCTAGTTGTGACAAGGAGATTTCCTTCTTACCCGTACTATGGCACCGTCGAAGCCTGCGTTTGCGTCTACCCAGTAGCTTCGTTAAACGCGCCCATTGCCGGTGATACGATTTNGGGCAGGCGGCAGTAAAACCCTTCCACAGCATCANCCAGTTCACTGAATCGATTCAGCTCANNCCGCACTAGAGCGCGGTGCACGTNTAAAGCATACACACACAGGAGCGGCACTTTACGGCTCGGGGCCTTTCCGGGTTAACTTCCCTATATAGGGCCCTNCGGTAAGGTTCCTAATTNGCTACTAACAAAGGGGGCTTAAACACGCAGTTCAGAGATTNACACAGTAAGTTAGCGNANCGGTTA]
[+] EMBL BX468370 [GCAGAATCGGCACGTAGGGTGTGTGTGTGTGTATAACCTGTGTGATCACGTAGCTAAGTAGGTTTGTGATAGTCACACTGTCATCGTCTGTTCGATCGTCCGGGGGAATGAAAGAGCTTGTATGGATGAGTATTGCGTGGTTGCGAACTGTACAAAGTAATATCAGTATGGATGAGTGTAGCACAGTACCAGAGGACTACGAGTTAGCAAACGGACTGGAGTCTCATTCCAGGTTCCTCACCACCAGAGGGAGGGTCTCTCCTACTTCATTTCGATGCGGCTCGCTTAAAGAAAACAAACCCAGATTATTCACAGTAGGCTGGTGCTAGTTGTGACAAGGAGATTTCCTTCTTACCCGTACTATGGCACCGTCGAAGCCTGCGTTTGCGTCTACCCAGTAGCTTCGTTAAACGCGCCCATTGCCGGTGATACGATTTNGGGCAGGCGGCAGTAAAACCCTTCCACAGCATCANCCAGTTCACTGAATCGATTCAGCTCANNCCGCACTAGAGCGCGGTGCACGTNTAAAGCATACACACACAGGAGCGGCACTTTACGGCTCGGGGCCTTTCCGGGTTAACTTCCCTATATAGGGCCCTNCGGTAAGGTTCCTAATTNGCTACTAACAAAGGGGGCTTAAACACGCAGTTCAGAGATTNACACAGTAAGTTAGCGNANCGGTTA]
consensusID : consensus_5887#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence
[CCGGGCAGTAAAACCCTTCCACAGCATCACCCAGTTCACTGAATCGATTCACTCACCCGCACTAGAGCGCGGTGCACGTTAAAGCATACACACACAGGAGCGCACTTTCGCTCGCGCTTCGTTAACTCCTTTTGCCTCGTTGTTCTATTTATAAAGGCTACACATAAATAAATATACACATACGAAGTAAGTAAGTAAGTAAGAACAAGGTACAGGGACGCAGGGGCGCGTGGTTCAGCGTGGTCCCGATCACCCGAAACGGGATGAAAGACAATGTTGGGGATACCGGCTGCTGTCTACTACACCACGCCGGCTAGAGTAATACACGGTGTGTACGGTGTCGGTGCTGTTTTCCGGGTTTATTGGGGTGTGAATAAGCGCTACCGAACCGTTGAGATTGTTGTATAAATAAAAAACTGCATACTAGGTAATACGGTAAAAATGGGGTGAAAAAAAACCGCCCAATAGTGGATTCGAGGCGCAAAATGTGACAATGTTACGCACGCACATATTAGCTAGGAATTTTGTTAATTAGGTACTACTATTGATGCTATTGAAAAACAAACCAGCACACTAATGGCTCTGATCGAATACCTTTGTACATATGAAAGACTGAATTCGAGAGGTTAATCGGCACGCGGGAGAAATGGGTGCGAAATCACGGAACGGGCAAATA]
[+] EMBL BM646157 [CCGGGCAGTAAAACCCTTCCACAGCATCACCCAGTTCACTGAATCGATTCACTCACCCGCACTAGAGCGCGGTGCACGTTAAAGCATACACACACAGGAGCGCACTTTCGCTCGCGCTTCGTTAACTCCTTTTGCCTCGTTGTTCTATTTATAAAGGCTACACATAAATAAATATACACATACGAAGTAAGTAAGTAAGTAAGAACAAGGTACAGGGACGCAGGGGCGCGTGGTTCAGCGTGGTCCCGATCACCCGAAACGGGATGAAAGACAATGTTGGGGATACCGGCTGCTGTCTACTACACCACGCCGGCTAGAGTAATACACGGTGTGTACGGTGTCGGTGCTGTTTTCCGGGTTTATTGGGGTGTGAATAAGCGCTACCGAACCGTTGAGATTGTTGTATAAATAAAAAACTGCATACTAGGTAATACGGTAAAAATGGGGTGAAAAAAAACCGCCCAATAGTGGATTCGAGGCGCAAAATGTGACAATGTTACGCACGCACATATTAGCTAGGAATTTTGTTAATTAGGTACTACTATTGATGCTATTGAAAAACAAACCAGCACACTAATGGCTCTGATCGAATACCTTTGTACATATGAAAGACTGAATTCGAGAGGTTAATCGGCACGCGGGAGAAATGGGTGCGAAATCACGGAACGGGCAAATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5887#0 CCGCCGACTGTGTGCGCACGCTCAAGAAGAGCTGCGAGGAGTTCAAGGAGAACCAGGTCC 60
consensus_5887#1 ------------------------------------------------------------
consensus_5887#2 ------------------------------------------------------------
consensus_5887#0 GGGATACCACGATCTGGAAGTACAAGGACGAGCTGATACAGCGCACGCGC-CGCACGCTC 119
consensus_5887#1 ----------------------GCAGAATCGGCACGTAGGGTGTGTGTGTGTGTATAACC 38
consensus_5887#2 ----------------------------CCGGGCAGTAAAACCCTTCCAC-AGCATCACC 31
* ** * * *
consensus_5887#0 GATGTGCTCGGGTTCTTCAAGCCGTCCACGGCGGGGGGCGGTGGCGGAGGTGGGTCGCTG 179
consensus_5887#1 TGTGTGATCACGTAGCTAAGTAGGTTTGTGATAGTCA-CACTGTCATCGTCTGTTCG--A 95
consensus_5887#2 CAGTTCACTGAATCGATTCACTCACCCGCACTAG--AGCGCGGTGCACGTTAAAGCATAC 89
* * * * * * * *
consensus_5887#0 TTGCGCGGTGGCAAGGACTCGCTCTACAAGCGGTGACTGTTGGCACGGGTCCGCAGTCTG 239
consensus_5887#1 TCGTCCGGGGGAATGAAAGAGCT-TGTATG-GATGAGTATTG---CGTGGTTGCGAACTG 150
consensus_5887#2 ACACACAGGAGCGCACTTTCGCTCGCGCTTCGTTAACTCCTTTTGCCTCGTTGTTCTATT 149
* * * *** * * * * * * * *
consensus_5887#0 TTCAGTCTCTAGTAGCAGCGCGAACTGTGAGCTGTTGTGTGCCGCATACACACCACTGTT 299
consensus_5887#1 TACAAAG--TAATATCAGTATGGA-TGAGTGTAGCACAGTACCAGAGGACTACGA--GTT 205
consensus_5887#2 TATAAAGGCTAC-----ACATAAA-TAAATATA-CACA-TACGAAGTAAGTAAGTAAGTA 201
* * ** * * * * * **
consensus_5887#0 ACTACTACTTTCCTAGTGTCACTACTATTACAATTACTACTACTACTTCGACTACTACCA 359
consensus_5887#1 AGCAAACGGACTGGAGTCTCATTCCAGGTTCC-TCACCACCAGAGGGAGGGTCTCTCCTA 264
consensus_5887#2 AGAACAAGGTACAGGGACGCAGGGGCGCGTGGTTCAGCGT---------GGTCCCGATCA 252
* * * ** * * * * *
consensus_5887#0 GTACGAACGTAAGGCTTTTAGGTTAGTTAGGGACGAGAACGAGTTGGTGCGGAG-AAGCA 418
consensus_5887#1 CTTC-ATTTCGATGCGGCTCGCTTAA--AGAAAACAAACCCAGATTATTCACAGTAGGCT 321
consensus_5887#2 CCCGAAACGGGATGAAAGACAATGTTGGGGATACCGGCTGCTGTCTACT-ACACCACGCC 311
* * * * * * * * * **
consensus_5887#0 GGCGC-AATTGTATAAAGTGAATACTCCATTCGA-GGGAACGGTGGGTTCGTAGTGAGAG 476
consensus_5887#1 GGTGCTAGTTGTGACAAGGAGATTTCCTTCTTAC-CCGTACTATGGCACCGTCG-----A 375
consensus_5887#2 GGCTAGAGTAATACACGGTGTGTACGGTGTCGGTGCTGTTTTCCGGGTTTATTG-----G 366
** * * * * * * ** * *
consensus_5887#0 GGATAGTAACTATTTTAAGTGCTCTAGAAGAATCGTCGGGGCGTGTTCTGACGTGTTCGA 536
consensus_5887#1 AGCCTGCGTTTGCGTCTA----CCCAGTAGCTTCGTTAAA-CGCGCCC-ATTGCCGGTGA 429
consensus_5887#2 GGTGTGAATAAGCGCT----------ACCGAACCGTTGAG-ATTGTTGTATAAATAAAAA 415
* * * *** * *
consensus_5887#0 ACCTATTCAGAAACAAAACAGTAGCCAGAGACTGTTTGAA-ACGGGTTGAACCTATGAGG 595
consensus_5887#1 TACGATTTNGGGC--AGGCGGCAGTAAAACCCTTCCACAGCATCANCCAGTTCACTGAAT 487
consensus_5887#2 ACTGCATACTAGGTAATACGGTAAAAATGGGGTGAAAAAAAACCGCCCAA-TAGTGGATT 474
* * * * * * * * * **
consensus_5887#0 CCTTCCCGCTAAACCTGGCTCGGACTGTATGAGTGTATGTTTGTTGTGTGCGTTCGCGCG 655
consensus_5887#1 CGATTCAGCTCANNCCGCACTAGAGCGCG---GTGCACGTNTAAAGCATACACACACAGG 544
consensus_5887#2 CGAGGCGCAAAATGTGACAATGTTACGCA----CGCACATATTAGCTAGGAATTT-TGTT 529
* * * * * * * *
consensus_5887#0 TGTGTGTGTGTATAACCTGTGTGATCACGTAGCTAAGTAGGTTTGTGATAGTCACACTGT 715
consensus_5887#1 AGCGGCACTTTACGGCTCGGGGCCTTTCCGGGTTAACTTCCCTATATAGGGCCCTNCGGT 604
consensus_5887#2 AATTAGGTACTACTATTGATGCTATTGAAAAACAAACCAGCACACTAATGGCTCTGATCG 589
** * * ** * *
consensus_5887#0 CATCGTCT-------GTTCGATCGTCCGGGGGAATGAACGAGCTTGTATGGATGAGTATT 768
consensus_5887#1 AAGGTTCCTA-----ATTNGCTACTAACAAAGGGGGCTTAAACACGCAGTTCAGAGATTN 659
consensus_5887#2 AATACCTTTGTACATATGAAAGACTGAATTCGAGAGGTTAATCG-GCACGCGGGAGAAAT 648
* * * * * * * * * ***
consensus_5887#0 GCGTGGTTGCGAACTGTACAAAGTAATATCAGTGT 803
consensus_5887#1 ACACAGTAAGTTAGCGNANCGGTTA---------- 684
consensus_5887#2 GGGTGCGAAATCACGGAACGGGCAAATA------- 676
* * * *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||