These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5894#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 803 fasta sequence [CGATCGTGAAGCACATCGGGGACGGGGTGGCGCCCGAGTCACAGAAGCAGTACGAGCAGCGGCTGGTGGTGCCCACGGTCATACCGACCTGCGGCGATCAGAATCTCATCTCGGTGGCGTACCGGTTGCATATGACGGTGCGGGTGCAGGGCTGCGGTTCGGATCCGGTGCTAGAGATACCGCTCATTATCGGTACGATTCCGCTGATGTTCCAGCAGCCGGCAACGGTTGCCGTACCGCAGGCGACGGCTGTCGGTGTGAGCAGTGGGCAGCAGGCTGGCTTCAGCTTCGGCAACTCATCCGGCAACTCACTACCTTCCGCCAGTGGTTTGGTGCGTGAGCAGACACTTCCACCGGAGTATTTGCCTCCACCAACGTACGAGGAAGCGATGAATGCAGCGGCCGTTGTAATAACCGACGATACGGACACCAATGCGATTGGCACCAAACCGTACGTACCGCTGTACCCATCGTACAACTTCAACGACATCCAGTGGCCACCGCTGCCACCGATGCCGGTGCAGCCACCGTTACCGCCAAAGCAGTGACCTCCCACTTGATCGATACATCGTCGGGGCCAACTTTACCCTATATCGTATTACAAAGCTTTACCATGACACGTGACAAACCCTGATGACAATTTCGGTCGATGAAACTTTTCCAACAATTCCAAACGCT-GGTCGGAGGATCATCTGCGATCTTTAAAACCTCATTATCTACAACAGTGAACCCAGAAAGCGATGCTTCCATC-TCGTTAGGCGTGACGCATTTTTTGGAGCATTTTGTTAACTTCTACTCTCCCA] [+] EMBL BX622130 [CGATCGTGAAGCACATCGGGGACGGGGTGGCGCCCGAGTCACAGAAGCAGTACGAGCAGCGGCTGGTGGTGCCCACGGTCATACCGACCTGCGGCGATCAGAATCTCATCTCGGTGGCGTACCGGTTGCATATGACGGTGCGGGTGCAGGGCTGCGGTTCGGATCCGGTGCTAGAGATACCGCTCATTATCGGTACGATTCCGCTGATGTTCCAGCAGCCGGCAACGGTTGCCGTACCGCAGGCGACGGCTGTCGGTGTGAGCAGTGGGCAGCAGGCTGGCTTCAGCTTCGGCAACTCATCCGGCAACTCACTACCTTCCGCCAGTGGTTTGGTGCGTGAGCAGACACTTCCACCGGAGTATTTGCCTCCACCAACGTACGAGGAAGCGATGAATGCAGCGGCCGTTGTAATAACCGACGATACGGACACCAATGCGATTGGCACCAAACCGTACGTACCGCTGTACCCATCGTACAACTTCAACGACATCCAGTGGCCACCGCTGCCACCGATGCCGGTGCAGCCACCGTTACCGCCAAAGCAGTGACCTCCCACTTGATCGATACATCGTCGGGGCCAACTTTACCCTATATCGTATTACAAAGCTTTACCATGACACGTGACAAACCCTGATGACAATTTCGGTCGATGAAACTTTTCCAACAATTCCAAACGCT GGTCGGAGGATCATCTGCGATCTTTAAAACCTCATTATCTACAACAGTGAACCCAGAAAGCGATGCTTCCATC TCGTTAGGCGTGACGCATTTTTTG ] [+] EMBL BM635903 [ ccgGACGGTGCGGGTGCAGGGCTGCGGTTCGGATCCGGTGCTAGAGATACCGCTCATTATCGGTACGATTCCGCTGATGTTCCAGCAGCCGGCAACGGTTGCCGTACCGCAGGCGACGGCTGTCGGTGTGAGCAGTGGGCAGCAGGCTGGCTTCAGCTTCGGCAACTCATCCGGCAACTCACTACCTTCCGCCAGTGGTTTGGTGCGTGAGCAGACACTTCCACCGGAGTATTTGCCTCCACCAACGTACGAGGAAGCGATGAATGCAGCGGCCGTTGTAATAACCGACGATACGGACACCAATGCGATTGGCACCAAACCGTACGTACCGCTGTACCCATCGTACAACTTCAACGACATCCAGTGGCCACCGCTGCCACCGATGCCGGTGCAGCCACCGTTACCGCCAAAGCAGTGACCTCCCACTTGATCGATACATCGTCGGGGCCAACTTTACCCTATATCGTATTACAAAGCTTTACCATGACACGTGACAAACCCTGATGACAATTTCGGTCGATGAAACTTTTCCAACAATTCCAAACGCTGGGTCGGAGGATCATCTGCGATCTTTAAAACCTCATTATCTACAACAGTGAACCCAGAAAGCGATGCTTCCATCTTCGTTAGGCGTGACGCATTTTTTGGAGCATTTTGTTAACTTCTACTCTCCCA] consensusID : consensus_5894#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 654 fasta sequence [CAGCCAGCCAGCCGTTGTGAGAGTTTCGTGCGTGCTTTTGTGGTTTCGTGTGAGAGAGAGAGGGGAAGGGGGAAGTAGGGACACTGCTCCCTTCAAACCAGAGGCCAGCGGCATCATGAAAGTGCACTGTGACATCCGCTTTACCAACAGCACGCAGGGAGCGTACCTTAGCGGGCAGCAACTGACAGGCCACGTCCAGATCAAGCTGACCGAGGCGAAGAAGTTCAATGAAATCACACTGCGAATAGTCGGCTACAGCAATGTGCAGTGGTCAGAGAAACGGGGCCAGGGCAGGCCATACCGCTCACGATCGATCTGCACAACCTGTCGTCGCGCATCATCGAGGGCGTTAACATGAAGCTGCTGCAGGAGATAACGTACCGACCTGCGGCGATCAGAATCTCATCTCGGTGGCGTACCGGTTGCATATGACGGTGCGGGTGCAGGGCTGCGGTTCGGATCCGGTGCTGGAGATACCGCTCATTATCGGTACGATTCCGCTGATGTTCCAGCAGCCGGCAACGGTTGCCGTACCGCAGGCGACGGCTGTCGGTGTGAGCAGTGGGCAGCAGGCTGGCTTCAGCTTCGGCAACTCATCCGGCAACTCACTACCTTCCGCCAGTGGTTTGGTGCGTGAGCAGACACTTCCACCGG] [+] EMBL BX606325 [CAGCCAGCCAGCCGTTGTGAGAGTTTCGTGCGTGCTTTTGTGGTTTCGTGTGAGAGAGAGAGGGGAAGGGGGAAGTAGGGACACTGCTCCCTTCAAACCAGAGGCCAGCGGCATCATGAAAGTGCACTGTGACATCCGCTTTACCAACAGCACGCAGGGAGCGTACCTTAGCGGGCAGCAACTGACAGGCCACGTCCAGATCAAGCTGACCGAGGCGAAGAAGTTCAATGAAATCACACTGCGAATAGTCGGCTACAGCAATGTGCAGTGGTCAGAGAAACGGGGCCAGGGCAGGCCATACCGCTCACGATCGATCTGCACAACCTGTCGTCGCGCATCATCGAGGGCGTTAACATGAAGCTGCTGCAGGAGATAACGTACCGACCTGCGGCGATCAGAATCTCATCTCGGTGGCGTACCGGTTGCATATGACGGTGCGGGTGCAGGGCTGCGGTTCGGATCCGGTGCTGGAGATACCGCTCATTATCGGTACGATTCCGCTGATGTTCCAGCAGCCGGCAACGGTTGCCGTACCGCAGGCGACGGCTGTCGGTGTGAGCAGTGGGCAGCAGGCTGGCTTCAGCTTCGGCAACTCATCCGGCAACTCACTACCTTCCGCCAGTGGTTTGGTGCGTGAGCAGACACTTCCACCGG] consensusID : consensus_5894#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 536 fasta sequence [CCGATAGAGAGCAGTGTAGTGGTAGTAGCCAGCTAGCCAGCCAGCCAGCCGTTGTCTAGGGTTTTGTGAGAGTTTCGTGCGTGTTTTTGTGGTTTCGTGTCAGAGGGGGAGGGGAAGGGAGACTGCTCCCTTCAAACCAGAGGCAAGCGGCATCATGAAAGTGCACTGTGACATCCGCTTTACCAACAGCACGCAGGGAGCGTACCTTAGCGGGCAGCAACTGACGGGCCACGTCCAGATCAAGCTGACCGAGGCGAAGAAGTTCAATGAAATCACACTGCGAATAGTCGGCTACAGCAATGTACAGTGGTCAGAGAAGCGGGGCCAGGGCAGGCAACGCCGTACGGTCTACTACACCGCCAAACGGGACCACCTGTCGTCGATGAAGGTGCTCGTTGGTGCGCAACAGAATGGCACGCCCACAGAACTGCCGGCCGGGGAGCACATCTACGAGTTTGCGTGCGAGCTGCCGTCCCATCTGCCCACCTCGTTCGAGGGCACGTACGGGCACTGCCGCTACACGGCCCAGGTCGTGT] [+] EMBL BM628581 [CCGATAGAGAGCAGTGTAGTGGTAGTAGCCAGCTAGCCAGCCAGCCAGCCGTTGTCTAGGGTTTTGTGAGAGTTTCGTGCGTGTTTTTGTGGTTTCGTGTCAGAGGGGGAGGGGAAGGGAGACTGCTCCCTTCAAACCAGAGGCAAGCGGCATCATGAAAGTGCACTGTGACATCCGCTTTACCAACAGCACGCAGGGAGCGTACCTTAGCGGGCAGCAACTGACGGGCCACGTCCAGATCAAGCTGACCGAGGCGAAGAAGTTCAATGAAATCACACTGCGAATAGTCGGCTACAGCAATGTACAGTGGTCAGAGAAGCGGGGCCAGGGCAGGCAACGCCGTACGGTCTACTACACCGCCAAACGGGACCACCTGTCGTCGATGAAGGTGCTCGTTGGTGCGCAACAGAATGGCACGCCCACAGAACTGCCGGCCGGGGAGCACATCTACGAGTTTGCGTGCGAGCTGCCGTCCCATCTGCCCACCTCGTTCGAGGGCACGTACGGGCACTGCCGCTACACGGCCCAGGTCGTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5894#1 ------------------------------------------------CAGCCAGCCAGC 12 consensus_5894#2 -----------CCGATAGAGAGCAGTGTAGTGGTAGTAGCCAGCTAGCCAGCCAGCCAGC 49 consensus_5894#0 CGATCGTGAAGCACATCGGGGACGGGGTGGCGCCCGAGTCACAGAAGCAGTACGAGCAGC 60 * **** consensus_5894#1 CGTTGT-------------GAGAGTTTCGTGCGTGCTTTTGTGGTTTCGTGTGAGAGAGA 59 consensus_5894#2 CGTTGTCTAGGGTTTTG-TGAGAGTTTCGTGCGTGTTTTTGTGGTTTCGTGTCAGAGGGG 108 consensus_5894#0 GGCTGGTGGTGCCCACGGTCATACCGACCTGCG-GCGATCAGAATCTCATCTCGGTGGCG 119 * ** * * * **** * * * ** * * * * consensus_5894#1 GAGGGGAAG-----GGGGAAGTAGGGACACTGCTCCC-TTCAAACCAGAGGCCAGCGGCA 113 consensus_5894#2 GAGGGGAAG-----GGAGA----------CTGCTCCC-TTCAAACCAGAGGCAAGCGGCA 152 consensus_5894#0 TACCGGTTGCATATGACGGTGCGGGTGCAGGGCTGCGGTTCGGATCCGGTGCTAGAGATA 179 * ** * * * *** * *** * * * ** ** * * consensus_5894#1 TCATGAAAGTGCACTGTGACATC--CGCTTTACCAACAGCACGCAGGGAG---CGTACCT 168 consensus_5894#2 TCATGAAAGTGCACTGTGACATC--CGCTTTACCAACAGCACGCAGGGAG---CGTACCT 207 consensus_5894#0 CCGCTCATTATCGGTACGATTCCGCTGATGTTCCAGCAGCCGGCAACGGTTGCCGTACCG 239 * * * * ** * * * * *** **** *** * ****** consensus_5894#1 TAGCGGGCAGCAACTGACAGGCCACGTCCAGATCAAGCTGACCGAGGCGAAGAAGTTCAA 228 consensus_5894#2 TAGCGGGCAGCAACTGACGGGCCACGTCCAGATCAAGCTGACCGAGGCGAAGAAGTTCAA 267 consensus_5894#0 CAGGCGACGGCTGTCGGTGTGAGCAGTGGGCAGCAGGCTGGCTTCAGCTTCGGCAACTCA 299 ** * * ** * * ** * ** **** * ** * * consensus_5894#1 TGAAATCACACTGCGAATAGTCGGCTACAGCAATGTGCAGTGGTCAGAGAAACGGGGCCA 288 consensus_5894#2 TGAAATCACACTGCGAATAGTCGGCTACAGCAATGTACAGTGGTCAGAGAAGCGGGGCCA 327 consensus_5894#0 TCCGGCAACTC-ACTACCTTCCGCCAGTGGTTTGGTGC-GTGAGCAGACACTTCCA-CCG 356 * ** * * * ** * * ** * *** **** * ** consensus_5894#1 GGGCAGGCCATACCGCTCACGATCGATCTGCACAACCTGTCG---TCGCG--CATCATCG 343 consensus_5894#2 GGGCAGGCAACGCCGT--ACGGTCTA-CTACACCGCCAAACGGGACCACC--TGTCGTCG 382 consensus_5894#0 GAGTATTTGCCTCCACCAACGTACGA--GGAAGCGATGAATGCAGCGGCCGTTGTAATAA 414 * * * ** *** * * * * * * * consensus_5894#1 A-GGGCGTTA--ACATGAAGCTGCTGCAGGAGATAACG--TACCGACCTGCGG--CGATC 396 consensus_5894#2 ATGAAGGTGC--TCGTTGGTGCGCAACAGAATGGCACGCCCACAGAACTGCCGGCCGGGG 440 consensus_5894#0 CCGACGATACGGACACCAATGCGATTGGCACCAAACCGTACGTACCGCTGTACCCATCGT 474 * * * * ** *** consensus_5894#1 AGAATCTCATCTCGGTGGCGTACCGGTTGCATATGACGGTGCGGGTGCAGGGCTGCGGTT 456 consensus_5894#2 AGCACATCTACGAGTTTGCGTGCGAGCTGC------CGTCCCATCTGCCCACCT-CGTTC 493 consensus_5894#0 ACAACTTCAACGACATCCAGTGGCCACCGCTGCCACCGATGCCGGTGCA-GCCACCGTTA 533 * * ** * * ** ** ** * *** * ** * consensus_5894#1 CGGATCCGGTGCTGGAGATACCGCTCATTATCGGTACGATTCCGCTGATGTTCCAGCAGC 516 consensus_5894#2 GAGGGCACGTACGGGCACTGCCGCT--------ACACGGCCCAGGTCGTGT--------- 536 consensus_5894#0 CCGCCAAAGCAGTGAC-CTCCCACTTGATCGATACATCGTCGGGGCCAACTTTACCCTAT 592 * * * * ** ** * * * consensus_5894#1 CGGCAACGGTTGCCGTACCGCAGGCGACGGCTGTCGGTGTGAGCAGTGGGCAGCAGGCTG 576 consensus_5894#2 ------------------------------------------------------------ consensus_5894#0 ATCGTATTACAAAGCTTTACCATGACACGTGACAAACCCTGATGACAATTTCGGTCGATG 652 consensus_5894#1 GCTTCAGCTTCGGCAACTCATCCGGCAACTCACTACCTTCCGCCAGTGGTTTGGTGCGTG 636 consensus_5894#2 ------------------------------------------------------------ consensus_5894#0 AAACTTTTCCAACAATTCCAAACGCTGGTCGGAGGATCATCTGCGATCTTTAAAACCTCA 712 consensus_5894#1 AGCAGACACTTCCACCGG------------------------------------------ 654 consensus_5894#2 ------------------------------------------------------------ consensus_5894#0 TTATCTACAACAGTGAACCCAGAAAGCGATGCTTCCATCTCGTTAGGCGTGACGCATTTT 772 consensus_5894#1 ------------------------------- consensus_5894#2 ------------------------------- consensus_5894#0 TTGGAGCATTTTGTTAACTTCTACTCTCCCA 803 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||