cluster # 5896

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Anopheles gambiae
cluster # 5896 cluster # 5896 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5896#0 length = 849 sequences # 2

consensus_5896#1 length = 808 sequences # 1
consensus_5896#2 length = 652 sequences # 1

consensusID : consensus_5896#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 849
fasta sequence

                              [ACTTGCATCTGCGCAGTGTAGCGTCGCAGACACGGTTGCCATAGTACACCGCCCGATCGACGCAACCATCGCAATCCACGAGCCCCAGGAAAGCCTCCGGAACAGGAATCAGCAATCAATCCAGCCGTACAGCAGCCACCAACAGCAGCTGATCGCGATGAAGCCGTTTCACAGCTGGAGCAGTGCGGTGACGATCCTCACCCTCGCCCTGTGCGCCGGTGTGGCGCTCGCCGCCCCGAACGTGCGCGTCAAGCGCGGCGACGAGGTGGAAGTCATCGCGGACGCCGAATCCGCCGTCAACCCGCTAGCGTCCCAGGATGCGGTAGCCATCGGCGACGACCTTGACCGTGACAAGCGCAAAGTTCCCGACCCGAAGTACGAGACCAAGAACGCCATCCTAGGATTCGTGTTTGGAAAAATCAACTCGTTCATCGACGCGAAGACGCGCTTCATTGACAAGCTGGACCACGCGAACATTGAGAAGAACAAGCAGCACCACATCGAGCCGCCGAAGCCGGTGCCCGACTTCCAGTCGCTGATCTCGTCCGTCATCACGCCGAAGGTGCAGTTCATCACGTCCAAGATCGGTTCGCTCAGCGGCAGCTTCCTGGGCGGCTCGTCCGGCGGCCACGGCAGCGACGACGACCATCACGGCAACGGCGGCGGTGGCGGTGCGCCCCAGCTCGGCAACATCGTCTCGTCGCTGCTGAAGCTGTCCGGGCCGATCCTGTCCGGTTCGTCCGGCTCGCAGCACGGTGGCTCCAATACGGTTTCGCTAGGCGATCACGACGATGACGAGTAGGCGCCCCGTCGTTGCGCCCAGGAGCTCCACCGGTCTGCGAGGAGGNG]

[+] EMBL BX626027             [ACTTGCATCTGCGCAGTGTAGCGTCGCAGACACGGTTGCCATAGTACACCGCCCGATCGACGCAACCATCGCAATCCACGAGCCCCAGGAAAGCCTCCGGAACAGGAATCAGCAATCAATCCAGCCGTACAGCAGCCACCAACAGCAGCTGATCGCGATGAAGCCGTTTCACAGCTGGAGCAGTGCGGTGACGATCCTCACCCTCGCCCTGTGCGCCGGTGTGGCGCTCGCCGCCCCGAACGTGCGCGTCAAGCGCGGCGACGAGGTGGAAGTCATCGCGGACGCCGAATCCGCCGTCAACCCGCTAGCGTCCCAGGATGCGGTAGCCATCGGCGACGACCTTGACCGTGACAAGCGCAAAGTTCCCGACCCGAAGTACGAGACCAAGAACGCCATCCTAGGATTCGTGTTTGGAAAAATCAACTCGTTCATCGACGCGAAGACGCGCTTCATTGACAAGCTGGACCACGCGAACATTGAGAAGAACAAGCAGCACCACATCGAGCCGCCGAAGCCGGTGCCCGACTTCCAGTCGCTGATCTCGTCCGTCATCACGCCGAAGGTGCAGTTCATCACGTCCAAGATCGGTTCGCTCAGCGGCAGCTTCCTGGGCGGCTCGTCCGGCGGCCACGGCAGCGACGACGACCATCACGGCAACGGCGGCGGTGGCGGTGCGCCCCAGCTCGGCAACATCGTCTCGTCGCTGCTGAAGCTGTCCGGGCCGATCCTGTCCGGTTCGTCCGGCTCGCAGCACGGTGGCTCCAATACGGTTTCGCTAGGCGATCACGACGATGACGAGTAGGCGCCCCGTCGTTGCGCCCAGGAGCTCCACCGGTCTGCGAGGAGGNG]
[+] EMBL BM629822             [       ccgGCGCAGTGTAGCGTCGCAGACACGGCTGCCATAGTACACCGCCCGATCGACGCAACCATCGCAATCCACGAGCCCCAGGAAAGCCTCCGGAACAGGAATCAGCAATCAATCCAGCCGTACAGCAGCCACCAACAGCAGCTGATCGCGATGAAGCCGTTTCACAGCTGGAGCAGTGCGGTGACGATCCTCACCCTCGCCCTGTGCGCCGGTGTGGCGCTCGCCGCCCCGAACGTGCGCGTCAAGCGCGGCGACGAGGTGGAAGTCATCGCGGACGCCGAATCCGCCGTCAACCCGCTAGCGTCCCAGGATGCGGTAGCCATCGGCGACGACCTTGACCGTGACAAGCGCAAAGTTCCCGACCCGAAGTACGAGACCAAGAACGCCATCCTAGGATTCGTGTTTGGAAAAATCAACTCGTTCATCGACGCGAAGACG                                                                                                                                                                                                                                                                                                                                                                                                                    ]




>consensus_5896#0
ACTTGCATCTGCGCAGTGTAGCGTCGCAGACACGGTTGCCATAGTACACCGCCCGATCGA
CGCAACCATCGCAATCCACGAGCCCCAGGAAAGCCTCCGGAACAGGAATCAGCAATCAAT
CCAGCCGTACAGCAGCCACCAACAGCAGCTGATCGCGATGAAGCCGTTTCACAGCTGGAG
CAGTGCGGTGACGATCCTCACCCTCGCCCTGTGCGCCGGTGTGGCGCTCGCCGCCCCGAA
CGTGCGCGTCAAGCGCGGCGACGAGGTGGAAGTCATCGCGGACGCCGAATCCGCCGTCAA
CCCGCTAGCGTCCCAGGATGCGGTAGCCATCGGCGACGACCTTGACCGTGACAAGCGCAA
AGTTCCCGACCCGAAGTACGAGACCAAGAACGCCATCCTAGGATTCGTGTTTGGAAAAAT
CAACTCGTTCATCGACGCGAAGACGCGCTTCATTGACAAGCTGGACCACGCGAACATTGA
GAAGAACAAGCAGCACCACATCGAGCCGCCGAAGCCGGTGCCCGACTTCCAGTCGCTGAT
CTCGTCCGTCATCACGCCGAAGGTGCAGTTCATCACGTCCAAGATCGGTTCGCTCAGCGG
CAGCTTCCTGGGCGGCTCGTCCGGCGGCCACGGCAGCGACGACGACCATCACGGCAACGG
CGGCGGTGGCGGTGCGCCCCAGCTCGGCAACATCGTCTCGTCGCTGCTGAAGCTGTCCGG
GCCGATCCTGTCCGGTTCGTCCGGCTCGCAGCACGGTGGCTCCAATACGGTTTCGCTAGG
CGATCACGACGATGACGAGTAGGCGCCCCGTCGTTGCGCCCAGGAGCTCCACCGGTCTGC
GAGGAGGNG

consensusID : consensus_5896#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 808
fasta sequence

                              [GAGTCACTTGCATCTGCGCAGTGTAGCGTCGCAGACACGGCTGCCATAGTACACCGCCCGATCGACGCAACCATCGCAATCCACGAGCCCCAGGAAAGCCTCCGGAACAGGAATCAGCAATCAATCCAGCCGTACAGCAGCCACCAACAGCAGCTGATCGCGATGAAGCCGTTTCACAGCTGGAGCAGTGCGGTGACGATCCTCACCCTCGCCCTGCGCCGGTGTGGCGCTCGCCGCCCCGAACGTGCGCGTCAAGCGCGGCGACGAGGTGGAAGTCATCGCGGACGCCGAATCCGCCGTCAACCCGCTAGCGTCCCAGGATGCGGTAGCCATCGGCGACGACCTTGACCGTGACAAGCGCAAAGTTCCCGACCCGAAGTACGAGACCAAGAACGCCATCCTAGGATTCGTGTTTGGAGCTAGCAAGCAGTCAGCCCAGGCGGTCAAAGACGCCATCCACCCGACCAAGGCCCCGGTCTCGGTAACGACGGACGATACGCCCGACTTCGATCGGCAGAAGGTGTCCCTCCAGGTGCCGGATGAGCTGTTCGGCAGCTCGTTTACCCTGGTGACGAACATATCGGGGCGCATCGGCGATCTCATCATGAGCACGGCACGCCGGGCTGGCGAATTTTTCTGGGTGTTCCAGCCCCTGTTCGGCAAGCACCTCACGATCGAGATCCCGACGACGACGACGACGACGACGACGCCGCGTACGACCACGACGACCCGGGGCGCTCGCACCACCACGCCCGATACCGGCCTCGTGCTCGACCTGCTGTCCAGCGCAACCGACACGAACGAATCT]

[+] EMBL BX621343             [GAGTCACTTGCATCTGCGCAGTGTAGCGTCGCAGACACGGCTGCCATAGTACACCGCCCGATCGACGCAACCATCGCAATCCACGAGCCCCAGGAAAGCCTCCGGAACAGGAATCAGCAATCAATCCAGCCGTACAGCAGCCACCAACAGCAGCTGATCGCGATGAAGCCGTTTCACAGCTGGAGCAGTGCGGTGACGATCCTCACCCTCGCCCTGCGCCGGTGTGGCGCTCGCCGCCCCGAACGTGCGCGTCAAGCGCGGCGACGAGGTGGAAGTCATCGCGGACGCCGAATCCGCCGTCAACCCGCTAGCGTCCCAGGATGCGGTAGCCATCGGCGACGACCTTGACCGTGACAAGCGCAAAGTTCCCGACCCGAAGTACGAGACCAAGAACGCCATCCTAGGATTCGTGTTTGGAGCTAGCAAGCAGTCAGCCCAGGCGGTCAAAGACGCCATCCACCCGACCAAGGCCCCGGTCTCGGTAACGACGGACGATACGCCCGACTTCGATCGGCAGAAGGTGTCCCTCCAGGTGCCGGATGAGCTGTTCGGCAGCTCGTTTACCCTGGTGACGAACATATCGGGGCGCATCGGCGATCTCATCATGAGCACGGCACGCCGGGCTGGCGAATTTTTCTGGGTGTTCCAGCCCCTGTTCGGCAAGCACCTCACGATCGAGATCCCGACGACGACGACGACGACGACGACGCCGCGTACGACCACGACGACCCGGGGCGCTCGCACCACCACGCCCGATACCGGCCTCGTGCTCGACCTGCTGTCCAGCGCAACCGACACGAACGAATCT]




>consensus_5896#1
GAGTCACTTGCATCTGCGCAGTGTAGCGTCGCAGACACGGCTGCCATAGTACACCGCCCG
ATCGACGCAACCATCGCAATCCACGAGCCCCAGGAAAGCCTCCGGAACAGGAATCAGCAA
TCAATCCAGCCGTACAGCAGCCACCAACAGCAGCTGATCGCGATGAAGCCGTTTCACAGC
TGGAGCAGTGCGGTGACGATCCTCACCCTCGCCCTGCGCCGGTGTGGCGCTCGCCGCCCC
GAACGTGCGCGTCAAGCGCGGCGACGAGGTGGAAGTCATCGCGGACGCCGAATCCGCCGT
CAACCCGCTAGCGTCCCAGGATGCGGTAGCCATCGGCGACGACCTTGACCGTGACAAGCG
CAAAGTTCCCGACCCGAAGTACGAGACCAAGAACGCCATCCTAGGATTCGTGTTTGGAGC
TAGCAAGCAGTCAGCCCAGGCGGTCAAAGACGCCATCCACCCGACCAAGGCCCCGGTCTC
GGTAACGACGGACGATACGCCCGACTTCGATCGGCAGAAGGTGTCCCTCCAGGTGCCGGA
TGAGCTGTTCGGCAGCTCGTTTACCCTGGTGACGAACATATCGGGGCGCATCGGCGATCT
CATCATGAGCACGGCACGCCGGGCTGGCGAATTTTTCTGGGTGTTCCAGCCCCTGTTCGG
CAAGCACCTCACGATCGAGATCCCGACGACGACGACGACGACGACGACGCCGCGTACGAC
CACGACGACCCGGGGCGCTCGCACCACCACGCCCGATACCGGCCTCGTGCTCGACCTGCT
GTCCAGCGCAACCGACACGAACGAATCT

consensusID : consensus_5896#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 652
fasta sequence

                              [CGGCAAGAACGAGTTCTGACCTTTTTGTTGTTGTTGTTGTTGTTGTTGCTGTTGCTGTTTGTTTACGTTCGTGTCCTGCGATCCCGATAGTGGAAGCCCCTTCCAATCCCGCACGCAAAGGAAAGCCTCCGGAACAGGAATCAGCAATCAATCCAGCCGTACAGCAGCCACCAACAGCAGCTGATCGCGATGAAGCCGTTTCACAGCTGGAGCAGTGCGGTGACGATCCTCACCCTCGCCCTGTGCGCCGGTGTGGCGCTCGCCGCCCCGAACGTGCGCGTCAAGCGCGGCGACGAGGTGGAAGTCATCGCGGACGCCGAATCCGCCGTCAACCCGCTAGCGTCCCAGGCTAGCAAGCAGTCAGCCCAGGCGGTCAAAGACGCCATCCACCCGACCAAGGCCCCGGTCTCGGTAACGACGGACGATACGCCCGACTTCGATCGGCAGAAGGTGTCCCTCCAGGTGCCGGATGAGCTGTTCGGCAGCTCGTTTACCCTGGTGACGAACATATCGGGGCGCATCGGCGATCTCATCATGAGCACGGCACGCCGGGCTGGCGAATTTTTCTGGGTGTTCCAGCCCCTGTTCGGCAAGCACCTCACGATCGAGATCCCGACGACGACGACGACGACGACGACGCCGCGTACGACCA]

[+] EMBL BX622937             [CGGCAAGAACGAGTTCTGACCTTTTTGTTGTTGTTGTTGTTGTTGTTGCTGTTGCTGTTTGTTTACGTTCGTGTCCTGCGATCCCGATAGTGGAAGCCCCTTCCAATCCCGCACGCAAAGGAAAGCCTCCGGAACAGGAATCAGCAATCAATCCAGCCGTACAGCAGCCACCAACAGCAGCTGATCGCGATGAAGCCGTTTCACAGCTGGAGCAGTGCGGTGACGATCCTCACCCTCGCCCTGTGCGCCGGTGTGGCGCTCGCCGCCCCGAACGTGCGCGTCAAGCGCGGCGACGAGGTGGAAGTCATCGCGGACGCCGAATCCGCCGTCAACCCGCTAGCGTCCCAGGCTAGCAAGCAGTCAGCCCAGGCGGTCAAAGACGCCATCCACCCGACCAAGGCCCCGGTCTCGGTAACGACGGACGATACGCCCGACTTCGATCGGCAGAAGGTGTCCCTCCAGGTGCCGGATGAGCTGTTCGGCAGCTCGTTTACCCTGGTGACGAACATATCGGGGCGCATCGGCGATCTCATCATGAGCACGGCACGCCGGGCTGGCGAATTTTTCTGGGTGTTCCAGCCCCTGTTCGGCAAGCACCTCACGATCGAGATCCCGACGACGACGACGACGACGACGACGCCGCGTACGACCA]




>consensus_5896#2
CGGCAAGAACGAGTTCTGACCTTTTTGTTGTTGTTGTTGTTGTTGTTGCTGTTGCTGTTT
GTTTACGTTCGTGTCCTGCGATCCCGATAGTGGAAGCCCCTTCCAATCCCGCACGCAAAG
GAAAGCCTCCGGAACAGGAATCAGCAATCAATCCAGCCGTACAGCAGCCACCAACAGCAG
CTGATCGCGATGAAGCCGTTTCACAGCTGGAGCAGTGCGGTGACGATCCTCACCCTCGCC
CTGTGCGCCGGTGTGGCGCTCGCCGCCCCGAACGTGCGCGTCAAGCGCGGCGACGAGGTG
GAAGTCATCGCGGACGCCGAATCCGCCGTCAACCCGCTAGCGTCCCAGGCTAGCAAGCAG
TCAGCCCAGGCGGTCAAAGACGCCATCCACCCGACCAAGGCCCCGGTCTCGGTAACGACG
GACGATACGCCCGACTTCGATCGGCAGAAGGTGTCCCTCCAGGTGCCGGATGAGCTGTTC
GGCAGCTCGTTTACCCTGGTGACGAACATATCGGGGCGCATCGGCGATCTCATCATGAGC
ACGGCACGCCGGGCTGGCGAATTTTTCTGGGTGTTCCAGCCCCTGTTCGGCAAGCACCTC
ACGATCGAGATCCCGACGACGACGACGACGACGACGACGCCGCGTACGACCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5896#1      -----------------GAGTCACTTGCATCTGCGCAGTGTAGCGTCGCAGACAC----- 38
consensus_5896#2      CGGCAAGAACGAGTTCTGACCTTTTTGTTGTTGTTGTTGTTGTTGTTGCTGTTGCTGTTT 60
consensus_5896#0      ----------------------ACTTGCATCTGCGCAGTGTAGCGTCGCAGACAC----- 33
                                              ***    **       *   ** ** *   *     

consensus_5896#1      GGCTGCCATAGTACACCGC----CCGATCGACGCAACCA-TCGCAATCCACGAGCCCCAG 93
consensus_5896#2      GTTTACGTTCGTGTCCTGCGATCCCGATAGTGGAAGCCCCTTCCAATCCCGCACGCAAAG 120
consensus_5896#0      GGTTGCCATAGTACACCGC----CCGATCGACGCAACCA-TCGCAATCCACGAGCCCCAG 88
                      *  * *  * **   * **    ***** *  * * **  *  ******   *  *  **

consensus_5896#1      GAAAGCCTCCGGAACAGGAATCAGCAATCAATCCAGCCGTACAGCAGCCACCAACAGCAG 153
consensus_5896#2      GAAAGCCTCCGGAACAGGAATCAGCAATCAATCCAGCCGTACAGCAGCCACCAACAGCAG 180
consensus_5896#0      GAAAGCCTCCGGAACAGGAATCAGCAATCAATCCAGCCGTACAGCAGCCACCAACAGCAG 148
                      ************************************************************

consensus_5896#1      CTGATCGCGATGAAGCCGTTTCACAGCTGGAGCAGTGCGGTGACGATCCTCACCCTCGCC 213
consensus_5896#2      CTGATCGCGATGAAGCCGTTTCACAGCTGGAGCAGTGCGGTGACGATCCTCACCCTCGCC 240
consensus_5896#0      CTGATCGCGATGAAGCCGTTTCACAGCTGGAGCAGTGCGGTGACGATCCTCACCCTCGCC 208
                      ************************************************************

consensus_5896#1      CT--GCGCCGGTGTGGCGCTCGCCGCCCCGAACGTGCGCGTCAAGCGCGGCGACGAGGTG 271
consensus_5896#2      CTGTGCGCCGGTGTGGCGCTCGCCGCCCCGAACGTGCGCGTCAAGCGCGGCGACGAGGTG 300
consensus_5896#0      CTGTGCGCCGGTGTGGCGCTCGCCGCCCCGAACGTGCGCGTCAAGCGCGGCGACGAGGTG 268
                      **  ********************************************************

consensus_5896#1      GAAGTCATCGCGGACGCCGAATCCGCCGTCAACCCGCTAGCGTCCCAGGATGCGGTAGCC 331
consensus_5896#2      GAAGTCATCGCGGACGCCGAATCCGCCGTCAACCCGCTAGCGTCCCAGG----------- 349
consensus_5896#0      GAAGTCATCGCGGACGCCGAATCCGCCGTCAACCCGCTAGCGTCCCAGGATGCGGTAGCC 328
                      *************************************************           

consensus_5896#1      ATCGGCGACGACCTTGACCGTGACAAGCGCAAAGTTCCCGACCCGAAGTACGAGACCAAG 391
consensus_5896#2      ------------------------------------------------------------
consensus_5896#0      ATCGGCGACGACCTTGACCGTGACAAGCGCAAAGTTCCCGACCCGAAGTACGAGACCAAG 388
                                                                                  

consensus_5896#1      AACGCCATCCTAGGATTCGTGTTTGGAGCTAGCAAGCAGTCAGCCCAGGCGGTCAAAGAC 451
consensus_5896#2      ----------------------------CTAGCAAGCAGTCAGCCCAGGCGGTCAAAGAC 381
consensus_5896#0      AACGCCATCCTAGGATTCGTGTTT----GGAAAAATCAACTCGTTCATCGACGCGAAGAC 444
                                                    *  ** **    *  **      * *****

consensus_5896#1      GCCATCCACC--CGACCAAGGCCCCGGTCTCGGTAACGACGGACGATACGCCCGACTTCG 509
consensus_5896#2      GCCATCCACC--CGACCAAGGCCCCGGTCTCGGTAACGACGGACGATACGCCCGACTTCG 439
consensus_5896#0      GCGCTTCATTGACAAGCTGGACCACGCGAACATTGA-GAAGAACAAGCAGCACCACATCG 503
                      **  * **    * * *  * ** **    *  * * ** * ** *   ** * ** ***

consensus_5896#1      ATCGGCAGAAGGTGTCCCTCCAGGTGCCG--GATGAGCT-GTTCGGCAGCTCGTTTACCC 566
consensus_5896#2      ATCGGCAGAAGGTGTCCCTCCAGGTGCCG--GATGAGCT-GTTCGGCAGCTCGTTTACCC 496
consensus_5896#0      AGCCGCCGAAGCCGGTGCCCGACTTCCAGTCGCTGATCTCGTCCGTCATCACGCCGAAGG 563
                      * * ** ****  *   * * *  * * *  * *** ** ** ** ** * **   *   

consensus_5896#1      TGGTGACGAACATATCGGGGCGCATCGGCGATCTCATCATGAGCACGGCACGCCGGGCTG 626
consensus_5896#2      TGGTGACGAACATATCGGGGCGCATCGGCGATCTCATCATGAGCACGGCACGCCGGGCTG 556
consensus_5896#0      TGCAGTTCATCACGTCCAAG---ATCGGTTCGCTCAGCGGCAGC-TTCCTGGGCGGCTCG 619
                      **  *   * **  **   *   *****    **** *   ***    *  * ***   *

consensus_5896#1      GCGAATTTTTCTGGGTGTTCCAGCCCCTGTT-CGGCAAGCACCTCA-CGATCGAGATCCC 684
consensus_5896#2      GCGAATTTTTCTGGGTGTTCCAGCCCCTGTT-CGGCAAGCACCTCA-CGATCGAGATCCC 614
consensus_5896#0      TCCGGCGGCCACGGCAGCGACGACGACCATCACGGCAACGGCGGCGGTGGCGGTGCGCCC 679
                       *          **  *   *  *  *  *  ******   *  *   *   * *  ***

consensus_5896#1      GACGACGACGACGACGAC--GACGACGCCGCGTACGACCACGACGACCCGGGGCGCTCGC 742
consensus_5896#2      GACGACGACGACGACGAC--GACGACGCCGCGTACGACCA-------------------- 652
consensus_5896#0      CAGCTCGGCAACATCGTCTCGTCGCTGCTGAAGCTGTCCGGGCCGATCCTGTCCGGTTCG 739
                       *   ** * **  ** *  * **  ** *     * **                     

consensus_5896#1      ACCACCACGCCCGATACCGGCCTCGTGCTCGACCTGCTGTCCAGCGCAACCGACACGAAC 802
consensus_5896#2      ------------------------------------------------------------
consensus_5896#0      TCCGGCTCGCAGCACGGTGGCTCCAATACGGTTTCGCTAGGCGATCACGACGATGACGAG 799
                                                                                  

consensus_5896#1      GAATCT-------------------------------------------- 808
consensus_5896#2      --------------------------------------------------
consensus_5896#0      TAGGCGCCCCGTCGTTGCGCCCAGGAGCTCCACCGGTCTGCGAGGAGGNG 849