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Anopheles gambiae
cluster # 5897 cluster # 5897       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5897#0 length = 659 sequences # 2  
consensus_5897#1 length = 621 sequences # 1  
consensus_5897#2 length = 555 sequences # 1  

consensusID : consensus_5897#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 659
fasta sequence
                              [GCAAGAATCGGCACGTGGAGTACGGGCCGTTCAACAGTGCGGATGAAAGTTACTCTGTGTGATTAAAACAGCCCATAAAGGATTCTACGAAAGGGAAATAAAGGTGAAAGGTGATTAAAACACTCATTACAATAGGAGTGAAGTGATTTCAATGTGGAAATATTAAAACTCATAGCATAGATTTGTGCAATAGTGAATGTTCCTGTACAACATGGTTACAAAACGATACCCTACTTAAACGTTTATCTTCGAATTTTGTGTGATTGCACATTCATCTGTGTAAACTGTTTCATTAATAAACAAAGTGTATTTACTGTTAGATCTACAAAATGACGAAAAAAACGTCAACCATTGGCCATTTTTCGGCCAGCACTTCCGGCACGGTCGGACAGACGGGTGGAATGAGCAGCTTTGGCACGGGAACCAGTGGAATGGAGAGCACCGACAAGCAGGGCCCTATCGTCGTCCGGGCTGCAGGCTCACCAGCATCACGAGCATCCGTCCGGTATCGGCGGTAAAAGCTCCGAGCAGCAGCGCCCGCACCAGCATCAGTCCCAGCATCA-TCACCAGCCATTCGCACCATGTGCAGGCAATCGGTCAGGAAAAATGCGGGACAAACGACACCCGTGCACTGGTTTCGCAAAGGGATTGCGGCTGCA]

[+] EMBL BX468138             [GCAAGAATCGGCACGTGGAGTACGGGCCGTTCAACAGTGCGGATGAAAGTTACTCTGTGTGATTAAAACAGCCCATAAAGGATTCTACGAAAGGGAAATAAAGGTGAAAGGTGATTAAAACACTCATTACAATAGGAGTGAAGTGATTTCAATGTGGAAATATTAAAACTCATAGCATAGATTTGTGCAATAGTGAATGTTCCTGTACAACATGGTTACAAAACGATACCCTACTTAAACGTTTATCTTCGAATTTTGTGTGATTGCACATTCATCTGTGTAAACTGTTTCATTAATAAACAAAGTGTATTTACTGTTAGATCTACAAAATGACGAAAAAAACGTCAACCATTGGCCATTTTTCGGCCAGCACTTCCGGCACGGTCGGACAGACGGGTGGAATGAGCAGCTTTGGCACGGGAACCAGTGGAATGGAGAGCACCGACAAGCAGGGCCCTATCGTCGTCCGGGCTGCAGGCTCACCAGCATCACGAGCATCCGTCCGGTATCGGCGGTAAAAGCTCCGAGCAGCAGCGCCCGCACCAGCATCAGTCCCAGCATCA TCACCAGCCATTCGCACCATGTGCAGGCAATCGGTCAGGAAAAATGCGGGACAAACGACACCCGTGCACTGGTTTCGCAAAGGGATTGCGGCTGCA]
[+] EMBL BM643374             [                                                                                                                                                                              ataaAGATTTGTGCAATAGTGAATGTTCCTGTACAACATGGTTACAAAACGATACCCTACTTAAACGTTTCTCTTCGATTTTTGTGTGATTGCACATTCATCTGTGTAAACTGTTTCATTAATAAACAAAGTGTATTTACTGTTAGATCTACAAAATGACGAAAAAAACGTCAACCATTGGCCATTTTTCGGCCAGCACTTCCGGCACGGTCGGACAGACGGGTGGAATGATCAACTTTGGCACGGGAAGGAGGGGAATGGAGAGCACCGACAAGCA GGCCCTATCGTCGTCCGGGCAGCAGGCTCACCAGCATCACGAGCATCCGTCCGGCATCGGCGGTAAAAGCTCCGAGCAGCAGCGCCCGCACCAGCATCAGTCCCAGCATCAGTC CCAGC                                                                                        ]


>consensus_5897#0 GCAAGAATCGGCACGTGGAGTACGGGCCGTTCAACAGTGCGGATGAAAGTTACTCTGTGT GATTAAAACAGCCCATAAAGGATTCTACGAAAGGGAAATAAAGGTGAAAGGTGATTAAAA CACTCATTACAATAGGAGTGAAGTGATTTCAATGTGGAAATATTAAAACTCATAGCATAG ATTTGTGCAATAGTGAATGTTCCTGTACAACATGGTTACAAAACGATACCCTACTTAAAC GTTTATCTTCGAATTTTGTGTGATTGCACATTCATCTGTGTAAACTGTTTCATTAATAAA CAAAGTGTATTTACTGTTAGATCTACAAAATGACGAAAAAAACGTCAACCATTGGCCATT TTTCGGCCAGCACTTCCGGCACGGTCGGACAGACGGGTGGAATGAGCAGCTTTGGCACGG GAACCAGTGGAATGGAGAGCACCGACAAGCAGGGCCCTATCGTCGTCCGGGCTGCAGGCT CACCAGCATCACGAGCATCCGTCCGGTATCGGCGGTAAAAGCTCCGAGCAGCAGCGCCCG CACCAGCATCAGTCCCAGCATCATCACCAGCCATTCGCACCATGTGCAGGCAATCGGTCA GGAAAAATGCGGGACAAACGACACCCGTGCACTGGTTTCGCAAAGGGATTGCGGCTGCA



consensusID : consensus_5897#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 621
fasta sequence
                              [CCGGTGCGGATGAAAGTTACTCTGTGTGAATAAAACAGCCCATAAAGGATTCTACGAAAGGAAAATAAAGGTGAATGGTGATTAAAACACTCATTACAATAGGAGTGAAGTGATTCCTATCTGGGAATATTAAAACTCATAGCATAGATTTGTGCAATAGTGAATGTTCCTGTACAACATGGTTACAAAACGATACCCTACTTAAACGTTTCTCGTCGATTTTTGTGTGATTGCACATTCATCTGTGTAAACTGTATCATTAATAAACAAAGTGTATTTACTATTAGATCTACAAAATGACGAAAAAAACGTCAACCATTGGCCATTTTTCGGCCAGCACTTCCGGCACGGTCGGACAGACGGGTGGAATGAGCAACTTTGGCACGGGAACCAGTGGAATGGAGAGCACCGACAAGCAGGCTTTATCGTCGTCCGGGCAGCAGGCTCACCAGCATCACGAGCATCCGTCCGGTATCGGCGGTAAAAGCTCCGAGCAGCTCCAACGTGGGCATTAACAAGTGGAGATTCCTTCTTCAATGCTTGGACGATTTGGATCGAAACCTAAGAAAGCTTAATTCGCGGCTGTTTGTGATACGAGGTCAACCGGCGGACGCGTTGCCA]

[+] EMBL BM633528             [CCGGTGCGGATGAAAGTTACTCTGTGTGAATAAAACAGCCCATAAAGGATTCTACGAAAGGAAAATAAAGGTGAATGGTGATTAAAACACTCATTACAATAGGAGTGAAGTGATTCCTATCTGGGAATATTAAAACTCATAGCATAGATTTGTGCAATAGTGAATGTTCCTGTACAACATGGTTACAAAACGATACCCTACTTAAACGTTTCTCGTCGATTTTTGTGTGATTGCACATTCATCTGTGTAAACTGTATCATTAATAAACAAAGTGTATTTACTATTAGATCTACAAAATGACGAAAAAAACGTCAACCATTGGCCATTTTTCGGCCAGCACTTCCGGCACGGTCGGACAGACGGGTGGAATGAGCAACTTTGGCACGGGAACCAGTGGAATGGAGAGCACCGACAAGCAGGCTTTATCGTCGTCCGGGCAGCAGGCTCACCAGCATCACGAGCATCCGTCCGGTATCGGCGGTAAAAGCTCCGAGCAGCTCCAACGTGGGCATTAACAAGTGGAGATTCCTTCTTCAATGCTTGGACGATTTGGATCGAAACCTAAGAAAGCTTAATTCGCGGCTGTTTGTGATACGAGGTCAACCGGCGGACGCGTTGCCA]


>consensus_5897#1 CCGGTGCGGATGAAAGTTACTCTGTGTGAATAAAACAGCCCATAAAGGATTCTACGAAAG GAAAATAAAGGTGAATGGTGATTAAAACACTCATTACAATAGGAGTGAAGTGATTCCTAT CTGGGAATATTAAAACTCATAGCATAGATTTGTGCAATAGTGAATGTTCCTGTACAACAT GGTTACAAAACGATACCCTACTTAAACGTTTCTCGTCGATTTTTGTGTGATTGCACATTC ATCTGTGTAAACTGTATCATTAATAAACAAAGTGTATTTACTATTAGATCTACAAAATGA CGAAAAAAACGTCAACCATTGGCCATTTTTCGGCCAGCACTTCCGGCACGGTCGGACAGA CGGGTGGAATGAGCAACTTTGGCACGGGAACCAGTGGAATGGAGAGCACCGACAAGCAGG CTTTATCGTCGTCCGGGCAGCAGGCTCACCAGCATCACGAGCATCCGTCCGGTATCGGCG GTAAAAGCTCCGAGCAGCTCCAACGTGGGCATTAACAAGTGGAGATTCCTTCTTCAATGC TTGGACGATTTGGATCGAAACCTAAGAAAGCTTAATTCGCGGCTGTTTGTGATACGAGGT CAACCGGCGGACGCGTTGCCA



consensusID : consensus_5897#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 555
fasta sequence
                              [CCGCAGCTAAAATGCAGGTTATGAAATCGGTGTAATCGTAGCATTTATTTCAAACATTGTTCGAACAGGAATACACAACTTTTCATTAAAAGCTTTTGCAAGTAATGCAAAATAAATTCACCATCAGCAAGGTGTTCAAAAATACTGCGTTTCAGACAACTGTACATCGTGAAATCTGTGAATCTGTGGAATCTAACTTAGTGTAACAAAGGTAAACAAAACAGCCCATAAAGGATTCTACGAAAGGAAAAATAAAGGTGAATGGTGATTAAAACACTCATTACAATAGGAGTGAAGTGATTTCTATCTGGGAATATTAAAACTCATAGCATAGATTTGTGCAATAGTGAATGTTCCTGTACAACATGGTTACAAAACGATACCCTACTTAAACGTTTCTCTTCGATTTTTGTGTGATTGCACATTCATCTGTGTAAACTGTTTCATTAATAAACAAAGTGTATTTACTGTTAGATCTACAAAATGACGAAAAAAACGTCAACCATTGGCCATTTTTCGGCCAGCACTTCCCGGCACGGTCGGACAGACGGGTGG]

[+] EMBL BM630230             [CCGCAGCTAAAATGCAGGTTATGAAATCGGTGTAATCGTAGCATTTATTTCAAACATTGTTCGAACAGGAATACACAACTTTTCATTAAAAGCTTTTGCAAGTAATGCAAAATAAATTCACCATCAGCAAGGTGTTCAAAAATACTGCGTTTCAGACAACTGTACATCGTGAAATCTGTGAATCTGTGGAATCTAACTTAGTGTAACAAAGGTAAACAAAACAGCCCATAAAGGATTCTACGAAAGGAAAAATAAAGGTGAATGGTGATTAAAACACTCATTACAATAGGAGTGAAGTGATTTCTATCTGGGAATATTAAAACTCATAGCATAGATTTGTGCAATAGTGAATGTTCCTGTACAACATGGTTACAAAACGATACCCTACTTAAACGTTTCTCTTCGATTTTTGTGTGATTGCACATTCATCTGTGTAAACTGTTTCATTAATAAACAAAGTGTATTTACTGTTAGATCTACAAAATGACGAAAAAAACGTCAACCATTGGCCATTTTTCGGCCAGCACTTCCCGGCACGGTCGGACAGACGGGTGG]


>consensus_5897#2 CCGCAGCTAAAATGCAGGTTATGAAATCGGTGTAATCGTAGCATTTATTTCAAACATTGT TCGAACAGGAATACACAACTTTTCATTAAAAGCTTTTGCAAGTAATGCAAAATAAATTCA CCATCAGCAAGGTGTTCAAAAATACTGCGTTTCAGACAACTGTACATCGTGAAATCTGTG AATCTGTGGAATCTAACTTAGTGTAACAAAGGTAAACAAAACAGCCCATAAAGGATTCTA CGAAAGGAAAAATAAAGGTGAATGGTGATTAAAACACTCATTACAATAGGAGTGAAGTGA TTTCTATCTGGGAATATTAAAACTCATAGCATAGATTTGTGCAATAGTGAATGTTCCTGT ACAACATGGTTACAAAACGATACCCTACTTAAACGTTTCTCTTCGATTTTTGTGTGATTG CACATTCATCTGTGTAAACTGTTTCATTAATAAACAAAGTGTATTTACTGTTAGATCTAC AAAATGACGAAAAAAACGTCAACCATTGGCCATTTTTCGGCCAGCACTTCCCGGCACGGT CGGACAGACGGGTGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5897#0      ------------------------------------------------------------
consensus_5897#1      ------------------------------------------------------------
consensus_5897#2      CCGCAGCTAAAATGCAGGTTATGAAATCGGTGTAATCGTAGCATTTATTTCAAACATTGT 60
                                                                                  

consensus_5897#0      ------------------------------------------------------------
consensus_5897#1      ------------------------------------------------------------
consensus_5897#2      TCGAACAGGAATACACAACTTTTCATTAAAAGCTTTTGCAAGTAATGCAAAATAAATTCA 120
                                                                                  

consensus_5897#0      -----------------------------GCAAGAATCGGCACGTGGAGTACGGGCCGTT 31
consensus_5897#1      ------------------------------------------------------------
consensus_5897#2      CCATCAGCAAGGTGTTCAAAAATACTGCGTTTCAGACAACTGTACATCGTGAAATCTGTG 180
                                                                                  

consensus_5897#0      CAACAGTGCGGATGAAAGTTACTCTGT-----GTGATTAAAACAGCCCATAAAGGATTCT 86
consensus_5897#1      --CCGGTGCGGATGAAAGTTACTCTGT-----GTGAATAAAACAGCCCATAAAGGATTCT 53
consensus_5897#2      AATCTGTG-GAATCTAACTTAGTGTAACAAAGGTAAACAAAACAGCCCATAAAGGATTCT 239
                         * *** * **  ** *** * *       ** *  **********************

consensus_5897#0      ACGAAAGGGAAA-TAAAGGTGAAAGGTGATTAAAACACTCATTACAATAGGAGTGAAGTG 145
consensus_5897#1      ACGAAAGGAAAA-TAAAGGTGAATGGTGATTAAAACACTCATTACAATAGGAGTGAAGTG 112
consensus_5897#2      ACGAAAGGAAAAATAAAGGTGAATGGTGATTAAAACACTCATTACAATAGGAGTGAAGTG 299
                      ******** *** ********** ************************************

consensus_5897#0      ATTTCAATGTGGAAATATTAAAACTCATAGCATAGATTTGTGCAATAGTGAATGTTCCTG 205
consensus_5897#1      ATTCCTATCTGGGAATATTAAAACTCATAGCATAGATTTGTGCAATAGTGAATGTTCCTG 172
consensus_5897#2      ATTTCTATCTGGGAATATTAAAACTCATAGCATAGATTTGTGCAATAGTGAATGTTCCTG 359
                      *** * ** *** ***********************************************

consensus_5897#0      TACAACATGGTTACAAAACGATACCCTACTTAAACGTTTATCTTCGAATTTTGTGTGATT 265
consensus_5897#1      TACAACATGGTTACAAAACGATACCCTACTTAAACGTTTCTCGTCGATTTTTGTGTGATT 232
consensus_5897#2      TACAACATGGTTACAAAACGATACCCTACTTAAACGTTTCTCTTCGATTTTTGTGTGATT 419
                      *************************************** ** **** ************

consensus_5897#0      GCACATTCATCTGTGTAAACTGTTTCATTAATAAACAAAGTGTATTTACTGTTAGATCTA 325
consensus_5897#1      GCACATTCATCTGTGTAAACTGTATCATTAATAAACAAAGTGTATTTACTATTAGATCTA 292
consensus_5897#2      GCACATTCATCTGTGTAAACTGTTTCATTAATAAACAAAGTGTATTTACTGTTAGATCTA 479
                      *********************** ************************** *********

consensus_5897#0      CAAAATGACGAAAAAAACGTCAACCATTGGCCATTTTTCGGCCAGCACTTCC-GGCACGG 384
consensus_5897#1      CAAAATGACGAAAAAAACGTCAACCATTGGCCATTTTTCGGCCAGCACTTCC-GGCACGG 351
consensus_5897#2      CAAAATGACGAAAAAAACGTCAACCATTGGCCATTTTTCGGCCAGCACTTCCCGGCACGG 539
                      **************************************************** *******

consensus_5897#0      TCGGACAGACGGGTGGAATGAGCAGCTTTGGCACGGGAACCAGTGGAATGGAGAGCACCG 444
consensus_5897#1      TCGGACAGACGGGTGGAATGAGCAACTTTGGCACGGGAACCAGTGGAATGGAGAGCACCG 411
consensus_5897#2      TCGGACAGACGGGTGG-------------------------------------------- 555
                      ****************                                            

consensus_5897#0      ACAAGCAGGGCCCTATCGTCGTCCGGGCTGCAGGCTCACCAGCATCACGAGCATCCGTCC 504
consensus_5897#1      ACAAGCAGG-CTTTATCGTCGTCCGGGCAGCAGGCTCACCAGCATCACGAGCATCCGTCC 470
consensus_5897#2      ------------------------------------------------------------
                                                                                  

consensus_5897#0      GGTATCGGCGGTAAAAGCTCCGAGCAGCAGCGCCCGCACCAGCATCAGTCCCAGCATCAT 564
consensus_5897#1      GGTATCGGCGGTAAAAGCTCCGAGCAGCTCCAACGTGGGCATTAACAAGTGGAGATTCCT 530
consensus_5897#2      ------------------------------------------------------------
                                                                                  

consensus_5897#0      CACCAGCCATTCGCACCATGTGCAGGCAATCGGTCAGGAAAAATGCGGGACAAACGAC-A 623
consensus_5897#1      TCTTCAATGCTTGGACGATTTG-----GATCGAAACCTAAGAAAGCTTAATTCGCGGCTG 585
consensus_5897#2      ------------------------------------------------------------
                                                                                  

consensus_5897#0      CCCGTGCACTGGTTTCGCAAAGGGATTGCGGCTGCA 659
consensus_5897#1      TTTGTGATACGAGGTCAACCGGCGGACGCGTTGCCA 621
consensus_5897#2      ------------------------------------
                                                          




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)