These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5897#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 659 fasta sequence [GCAAGAATCGGCACGTGGAGTACGGGCCGTTCAACAGTGCGGATGAAAGTTACTCTGTGTGATTAAAACAGCCCATAAAGGATTCTACGAAAGGGAAATAAAGGTGAAAGGTGATTAAAACACTCATTACAATAGGAGTGAAGTGATTTCAATGTGGAAATATTAAAACTCATAGCATAGATTTGTGCAATAGTGAATGTTCCTGTACAACATGGTTACAAAACGATACCCTACTTAAACGTTTATCTTCGAATTTTGTGTGATTGCACATTCATCTGTGTAAACTGTTTCATTAATAAACAAAGTGTATTTACTGTTAGATCTACAAAATGACGAAAAAAACGTCAACCATTGGCCATTTTTCGGCCAGCACTTCCGGCACGGTCGGACAGACGGGTGGAATGAGCAGCTTTGGCACGGGAACCAGTGGAATGGAGAGCACCGACAAGCAGGGCCCTATCGTCGTCCGGGCTGCAGGCTCACCAGCATCACGAGCATCCGTCCGGTATCGGCGGTAAAAGCTCCGAGCAGCAGCGCCCGCACCAGCATCAGTCCCAGCATCA-TCACCAGCCATTCGCACCATGTGCAGGCAATCGGTCAGGAAAAATGCGGGACAAACGACACCCGTGCACTGGTTTCGCAAAGGGATTGCGGCTGCA] [+] EMBL BX468138 [GCAAGAATCGGCACGTGGAGTACGGGCCGTTCAACAGTGCGGATGAAAGTTACTCTGTGTGATTAAAACAGCCCATAAAGGATTCTACGAAAGGGAAATAAAGGTGAAAGGTGATTAAAACACTCATTACAATAGGAGTGAAGTGATTTCAATGTGGAAATATTAAAACTCATAGCATAGATTTGTGCAATAGTGAATGTTCCTGTACAACATGGTTACAAAACGATACCCTACTTAAACGTTTATCTTCGAATTTTGTGTGATTGCACATTCATCTGTGTAAACTGTTTCATTAATAAACAAAGTGTATTTACTGTTAGATCTACAAAATGACGAAAAAAACGTCAACCATTGGCCATTTTTCGGCCAGCACTTCCGGCACGGTCGGACAGACGGGTGGAATGAGCAGCTTTGGCACGGGAACCAGTGGAATGGAGAGCACCGACAAGCAGGGCCCTATCGTCGTCCGGGCTGCAGGCTCACCAGCATCACGAGCATCCGTCCGGTATCGGCGGTAAAAGCTCCGAGCAGCAGCGCCCGCACCAGCATCAGTCCCAGCATCA TCACCAGCCATTCGCACCATGTGCAGGCAATCGGTCAGGAAAAATGCGGGACAAACGACACCCGTGCACTGGTTTCGCAAAGGGATTGCGGCTGCA] [+] EMBL BM643374 [ ataaAGATTTGTGCAATAGTGAATGTTCCTGTACAACATGGTTACAAAACGATACCCTACTTAAACGTTTCTCTTCGATTTTTGTGTGATTGCACATTCATCTGTGTAAACTGTTTCATTAATAAACAAAGTGTATTTACTGTTAGATCTACAAAATGACGAAAAAAACGTCAACCATTGGCCATTTTTCGGCCAGCACTTCCGGCACGGTCGGACAGACGGGTGGAATGATCAACTTTGGCACGGGAAGGAGGGGAATGGAGAGCACCGACAAGCA GGCCCTATCGTCGTCCGGGCAGCAGGCTCACCAGCATCACGAGCATCCGTCCGGCATCGGCGGTAAAAGCTCCGAGCAGCAGCGCCCGCACCAGCATCAGTCCCAGCATCAGTC CCAGC ] consensusID : consensus_5897#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 621 fasta sequence [CCGGTGCGGATGAAAGTTACTCTGTGTGAATAAAACAGCCCATAAAGGATTCTACGAAAGGAAAATAAAGGTGAATGGTGATTAAAACACTCATTACAATAGGAGTGAAGTGATTCCTATCTGGGAATATTAAAACTCATAGCATAGATTTGTGCAATAGTGAATGTTCCTGTACAACATGGTTACAAAACGATACCCTACTTAAACGTTTCTCGTCGATTTTTGTGTGATTGCACATTCATCTGTGTAAACTGTATCATTAATAAACAAAGTGTATTTACTATTAGATCTACAAAATGACGAAAAAAACGTCAACCATTGGCCATTTTTCGGCCAGCACTTCCGGCACGGTCGGACAGACGGGTGGAATGAGCAACTTTGGCACGGGAACCAGTGGAATGGAGAGCACCGACAAGCAGGCTTTATCGTCGTCCGGGCAGCAGGCTCACCAGCATCACGAGCATCCGTCCGGTATCGGCGGTAAAAGCTCCGAGCAGCTCCAACGTGGGCATTAACAAGTGGAGATTCCTTCTTCAATGCTTGGACGATTTGGATCGAAACCTAAGAAAGCTTAATTCGCGGCTGTTTGTGATACGAGGTCAACCGGCGGACGCGTTGCCA] [+] EMBL BM633528 [CCGGTGCGGATGAAAGTTACTCTGTGTGAATAAAACAGCCCATAAAGGATTCTACGAAAGGAAAATAAAGGTGAATGGTGATTAAAACACTCATTACAATAGGAGTGAAGTGATTCCTATCTGGGAATATTAAAACTCATAGCATAGATTTGTGCAATAGTGAATGTTCCTGTACAACATGGTTACAAAACGATACCCTACTTAAACGTTTCTCGTCGATTTTTGTGTGATTGCACATTCATCTGTGTAAACTGTATCATTAATAAACAAAGTGTATTTACTATTAGATCTACAAAATGACGAAAAAAACGTCAACCATTGGCCATTTTTCGGCCAGCACTTCCGGCACGGTCGGACAGACGGGTGGAATGAGCAACTTTGGCACGGGAACCAGTGGAATGGAGAGCACCGACAAGCAGGCTTTATCGTCGTCCGGGCAGCAGGCTCACCAGCATCACGAGCATCCGTCCGGTATCGGCGGTAAAAGCTCCGAGCAGCTCCAACGTGGGCATTAACAAGTGGAGATTCCTTCTTCAATGCTTGGACGATTTGGATCGAAACCTAAGAAAGCTTAATTCGCGGCTGTTTGTGATACGAGGTCAACCGGCGGACGCGTTGCCA] consensusID : consensus_5897#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 555 fasta sequence [CCGCAGCTAAAATGCAGGTTATGAAATCGGTGTAATCGTAGCATTTATTTCAAACATTGTTCGAACAGGAATACACAACTTTTCATTAAAAGCTTTTGCAAGTAATGCAAAATAAATTCACCATCAGCAAGGTGTTCAAAAATACTGCGTTTCAGACAACTGTACATCGTGAAATCTGTGAATCTGTGGAATCTAACTTAGTGTAACAAAGGTAAACAAAACAGCCCATAAAGGATTCTACGAAAGGAAAAATAAAGGTGAATGGTGATTAAAACACTCATTACAATAGGAGTGAAGTGATTTCTATCTGGGAATATTAAAACTCATAGCATAGATTTGTGCAATAGTGAATGTTCCTGTACAACATGGTTACAAAACGATACCCTACTTAAACGTTTCTCTTCGATTTTTGTGTGATTGCACATTCATCTGTGTAAACTGTTTCATTAATAAACAAAGTGTATTTACTGTTAGATCTACAAAATGACGAAAAAAACGTCAACCATTGGCCATTTTTCGGCCAGCACTTCCCGGCACGGTCGGACAGACGGGTGG] [+] EMBL BM630230 [CCGCAGCTAAAATGCAGGTTATGAAATCGGTGTAATCGTAGCATTTATTTCAAACATTGTTCGAACAGGAATACACAACTTTTCATTAAAAGCTTTTGCAAGTAATGCAAAATAAATTCACCATCAGCAAGGTGTTCAAAAATACTGCGTTTCAGACAACTGTACATCGTGAAATCTGTGAATCTGTGGAATCTAACTTAGTGTAACAAAGGTAAACAAAACAGCCCATAAAGGATTCTACGAAAGGAAAAATAAAGGTGAATGGTGATTAAAACACTCATTACAATAGGAGTGAAGTGATTTCTATCTGGGAATATTAAAACTCATAGCATAGATTTGTGCAATAGTGAATGTTCCTGTACAACATGGTTACAAAACGATACCCTACTTAAACGTTTCTCTTCGATTTTTGTGTGATTGCACATTCATCTGTGTAAACTGTTTCATTAATAAACAAAGTGTATTTACTGTTAGATCTACAAAATGACGAAAAAAACGTCAACCATTGGCCATTTTTCGGCCAGCACTTCCCGGCACGGTCGGACAGACGGGTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5897#0 ------------------------------------------------------------ consensus_5897#1 ------------------------------------------------------------ consensus_5897#2 CCGCAGCTAAAATGCAGGTTATGAAATCGGTGTAATCGTAGCATTTATTTCAAACATTGT 60 consensus_5897#0 ------------------------------------------------------------ consensus_5897#1 ------------------------------------------------------------ consensus_5897#2 TCGAACAGGAATACACAACTTTTCATTAAAAGCTTTTGCAAGTAATGCAAAATAAATTCA 120 consensus_5897#0 -----------------------------GCAAGAATCGGCACGTGGAGTACGGGCCGTT 31 consensus_5897#1 ------------------------------------------------------------ consensus_5897#2 CCATCAGCAAGGTGTTCAAAAATACTGCGTTTCAGACAACTGTACATCGTGAAATCTGTG 180 consensus_5897#0 CAACAGTGCGGATGAAAGTTACTCTGT-----GTGATTAAAACAGCCCATAAAGGATTCT 86 consensus_5897#1 --CCGGTGCGGATGAAAGTTACTCTGT-----GTGAATAAAACAGCCCATAAAGGATTCT 53 consensus_5897#2 AATCTGTG-GAATCTAACTTAGTGTAACAAAGGTAAACAAAACAGCCCATAAAGGATTCT 239 * *** * ** ** *** * * ** * ********************** consensus_5897#0 ACGAAAGGGAAA-TAAAGGTGAAAGGTGATTAAAACACTCATTACAATAGGAGTGAAGTG 145 consensus_5897#1 ACGAAAGGAAAA-TAAAGGTGAATGGTGATTAAAACACTCATTACAATAGGAGTGAAGTG 112 consensus_5897#2 ACGAAAGGAAAAATAAAGGTGAATGGTGATTAAAACACTCATTACAATAGGAGTGAAGTG 299 ******** *** ********** ************************************ consensus_5897#0 ATTTCAATGTGGAAATATTAAAACTCATAGCATAGATTTGTGCAATAGTGAATGTTCCTG 205 consensus_5897#1 ATTCCTATCTGGGAATATTAAAACTCATAGCATAGATTTGTGCAATAGTGAATGTTCCTG 172 consensus_5897#2 ATTTCTATCTGGGAATATTAAAACTCATAGCATAGATTTGTGCAATAGTGAATGTTCCTG 359 *** * ** *** *********************************************** consensus_5897#0 TACAACATGGTTACAAAACGATACCCTACTTAAACGTTTATCTTCGAATTTTGTGTGATT 265 consensus_5897#1 TACAACATGGTTACAAAACGATACCCTACTTAAACGTTTCTCGTCGATTTTTGTGTGATT 232 consensus_5897#2 TACAACATGGTTACAAAACGATACCCTACTTAAACGTTTCTCTTCGATTTTTGTGTGATT 419 *************************************** ** **** ************ consensus_5897#0 GCACATTCATCTGTGTAAACTGTTTCATTAATAAACAAAGTGTATTTACTGTTAGATCTA 325 consensus_5897#1 GCACATTCATCTGTGTAAACTGTATCATTAATAAACAAAGTGTATTTACTATTAGATCTA 292 consensus_5897#2 GCACATTCATCTGTGTAAACTGTTTCATTAATAAACAAAGTGTATTTACTGTTAGATCTA 479 *********************** ************************** ********* consensus_5897#0 CAAAATGACGAAAAAAACGTCAACCATTGGCCATTTTTCGGCCAGCACTTCC-GGCACGG 384 consensus_5897#1 CAAAATGACGAAAAAAACGTCAACCATTGGCCATTTTTCGGCCAGCACTTCC-GGCACGG 351 consensus_5897#2 CAAAATGACGAAAAAAACGTCAACCATTGGCCATTTTTCGGCCAGCACTTCCCGGCACGG 539 **************************************************** ******* consensus_5897#0 TCGGACAGACGGGTGGAATGAGCAGCTTTGGCACGGGAACCAGTGGAATGGAGAGCACCG 444 consensus_5897#1 TCGGACAGACGGGTGGAATGAGCAACTTTGGCACGGGAACCAGTGGAATGGAGAGCACCG 411 consensus_5897#2 TCGGACAGACGGGTGG-------------------------------------------- 555 **************** consensus_5897#0 ACAAGCAGGGCCCTATCGTCGTCCGGGCTGCAGGCTCACCAGCATCACGAGCATCCGTCC 504 consensus_5897#1 ACAAGCAGG-CTTTATCGTCGTCCGGGCAGCAGGCTCACCAGCATCACGAGCATCCGTCC 470 consensus_5897#2 ------------------------------------------------------------ consensus_5897#0 GGTATCGGCGGTAAAAGCTCCGAGCAGCAGCGCCCGCACCAGCATCAGTCCCAGCATCAT 564 consensus_5897#1 GGTATCGGCGGTAAAAGCTCCGAGCAGCTCCAACGTGGGCATTAACAAGTGGAGATTCCT 530 consensus_5897#2 ------------------------------------------------------------ consensus_5897#0 CACCAGCCATTCGCACCATGTGCAGGCAATCGGTCAGGAAAAATGCGGGACAAACGAC-A 623 consensus_5897#1 TCTTCAATGCTTGGACGATTTG-----GATCGAAACCTAAGAAAGCTTAATTCGCGGCTG 585 consensus_5897#2 ------------------------------------------------------------ consensus_5897#0 CCCGTGCACTGGTTTCGCAAAGGGATTGCGGCTGCA 659 consensus_5897#1 TTTGTGATACGAGGTCAACCGGCGGACGCGTTGCCA 621 consensus_5897#2 ------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||