These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5903#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 947 fasta sequence [CCGGCGGAGAAAGGTGGTCGGAGATTAACGATTTGTTGACGCAGCTGCACACGAAAATATCGGAAGCCGCCAACACTATCAGATGTAGCAGCTGCTGTCTGCGCCACCCGCGGAAACCGACCGGACGGGCACACTACGCGGCTAGGGAGTGTAGTTCATGCAAGATCCGTCATCCAGCACGGGAGGGCGACATTTGGGCTGAGACGAGCTTCCTCGGTTTGCGCTGGAAGTATCTCGCGATGATGGAGGGCAACGTGTACGACATTACGGAGTGGGCCAACTGTCAGAAGGGGGCCCTGTCCCACCTGCAGCCCAATTCGCACATCGTGCAGTATCGCATTGTGCTTGGCAGCAGCTCCCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAACATCAACCACAGCATCAGGCCGGCCAACCACTGGACAAGGATCAGATTGGACGCTCCCGCAAAGAACCGACTGCAAATGAACCGAATTTGGATGATTTTCTGAACAACATCTACGCCGGCCAGAACCAGCAAGCTTCATCGCAGAATGCTTCGTCTAGGCGACGCTATCGTAGAAACTAAAACCCCAACCGCCACACGCCATTTGCGAAGAACGAGGGGATTGTTTTTCGCATCTCACTCAACTCAACTCCACTTAAACGTGAATCCATGTTTTCTCCCCCGCCTTCTATAGACCCATTAACTCAACCCGATAAATTCGAACCACCAGTTTTGATGGCATGACCCCAGGCAGGAGCCAAGGAGTCGCCGGTGTGTTTATGCGCGTTTGAAATAGTACCACGAATCCTTCAACAATCTCTACCCCTTACTTACTCTCTGGAAACCGTTTTGTCGAGCGAGATACAGATTCGGTGTCGCGTTCGTTCGTTCGTTCAACAACCGTTAGGTCCCCTGTATTCCGTTAGCAAGCAAAGTGGCAAAGGTTTTGGGAATTTA] [+] EMBL BM655480 [CCGGCGGAGAAAGGTGGTCGGAGATTAACGATTTGTTGACGCAGCTGCACACGAAAATATCGGAAGCCGCCAACACTATCAGATGTAGCAGCTGCTGTCTGCGCCACCCGCGGAAACCGACCGGACGGGCACACTACGCGGCTAGGGAGTGTAGTTCATGCAAGATCCGTCATCCAGCACGGGAGGGCGACATTTGGGCTGAGACGAGCTTCCTCGGTTTGCGCTGGAAGTATCTCGCGATGATGGAGGGCAACGTGTACGACATTACGGAGTGGGCCAACTGTCAGAAGGGGGCCCTGTCCCACCTGCAGCCCAATTCGCACATCGTGCAGTATCGCATTGTGCTTGGCAGCAGCTCCCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAACATCAACCACAGCATCAGGCCGGCCAACCACTGGACAAGGATCAGATTGGACGCTCCCGCAAAGAACCGACTGCAAATGAACCGAATTTGGATGATTTTCTGAACAACATCTACGCCGGCCAGAACCAGCAAGCTTCATCGCAGAATGCTTCGTCTAGGCGACGCTATCGTAGAAACTAAAACCCCAACCGCCACACGCCATTTGCGAAGAACGAGGGGATTGTTTTTCGCAT ] [+] EMBL BM641125 [ ccGGAAGTATCTCGCGATGATGGAGGGCAACGTGTACGACATTACGGAGTGGGCCAACTGTCAGAAGGGGGCCCTGTCCCACCTGGGGCCCAATTCGCACATCGTGCAGTATCGCATTGTGCTTGGCAGCAGCTCCCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAACATCAACCACAGCATCAGGCCGGCCAACCACTGGACAAGGATCAGATTGGACGCTCCCGCAAAGAACCGACTGCAAATGAACCGAATTTGGATGATTTTCTGAACAACATCTACGCCGGCCAGAACCAGCAAGCTTCATCGCAGAATGCTTCGTCTAGGCGACGCTATCGTAGAAACTAAAACCCCAACCGCCACACGCCATTTGCGAAGAACGAGGGGATTGTTTTTCGCATCTCACTCAACTCAACTCCACTTAAACGTGAATCCATGTTTTCTCCCCCGCCTTCTATAGACCCATTAACTCAACCCGATAAATTCGAACCACCAGTTTTGATGGCATGACCCCAGGCAGGAGCCAAGGAGTCGCCGGTGTGTTTATGCGCGTTTGAAATAGTACCACGAATCCTTCAACAATCTCTACCCCTTACTTACTCTCTGGAAACCGTTTTGTC ] [+] EMBL BM631688 [ ccgGGGCAACGTGTACGACATTACGGAGTGGGCCAACTGTCAGAAGGGGGCCCTGTCCCACCTGCAGCCCAATTCGCACATCGTGCAGTATCGCATTGTGCTTGGCAGCAGCTCCCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAACATCAACCACAGCATCAGGCCGGCCAACCACTGGACAAGGATCAGATTGGACGCTCCCGCAAAGAACCGACTGCAAATGAACCGAATTTGGATGATTTTCTGAACAACATCTACGCCGGCCAGAACCAGCAAGCTTCATCGCAGAATGCTTCGTCTAGGCGACGCTATCGTAGAAACTAAAACCCCAACCGCCACACGCCATTTGCGAAGAACGAGGGGATTGTTTTTCGCATCTCACTCAACTCAACTCCACTTAAACGTGAATCCATGTTTTCTCCCCCGCCTTCTATAGACCCATTAACTCAACCCGATAAATTCGAACCACCAGTTTTGATGGCATGACCCCAGGCAGGAGCCAAGGAGTCGCCGGTGTGTTTATGCGCGTTTGAAATAGTACCACGAATCCTTCAACAATCTCTACCCCTTACTTACTCTCTGGAAACCGTTTTGTCGAGCGAGATACAGATTCGGTGTCGCGTTCGTTCGTTCGTTCAACAACCGTTAGGTCCCCTGTATTCCGTTAGCAAGCAAAGTGGCAAAGGTTTTGGGAATTTA] consensusID : consensus_5903#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 527 fasta sequence [GTACCACGAATCCTTCAACAATCTCTATTGCTTACTTACTCTCTGCAAAACGTTTTGTCGAGCGAGATACAGATTCGGTGTCGCGTTCGTTCGTTCAACAACCGTTAGGTCCCCTGTTTTCCGTTAGCAAACGCAGTGGCAAAGGTTTTGGAATTTAAAATTTTCGATGTAAAAGTTAAGCGTCGACATGTTCTCGTTCACCGTTTCAGTACAAAACTCTCCTTTCTCGATCGATGTTTATCGTCCGTGTGTGATTGTGTGTAGTGCGGAGTGAAGCAGTAATCCGCATTGGATGAGGAACAATCGGAGTGAATTTGGTTTGGTCGTGTGTGTGTATTCTATTAGTAAATTCAATGAATGTCTATTGAGCCCCCTTTACACTACTCGCTAACGGAATGAACGAAATCAACTTAATAATTAATTCACGCATAAAGCGGAATACGTACGGAAATTAGACGCTTCAATGCCACATGCAGTGGGCATCCGGAGCTTAACAATATGTAACCACTTGAGAATAAATTTACCAA] [+] EMBL BX615358 [GTACCACGAATCCTTCAACAATCTCTATTGCTTACTTACTCTCTGCAAAACGTTTTGTCGAGCGAGATACAGATTCGGTGTCGCGTTCGTTCGTTCAACAACCGTTAGGTCCCCTGTTTTCCGTTAGCAAACGCAGTGGCAAAGGTTTTGGAATTTAAAATTTTCGATGTAAAAGTTAAGCGTCGACATGTTCTCGTTCACCGTTTCAGTACAAAACTCTCCTTTCTCGATCGATGTTTATCGTCCGTGTGTGATTGTGTGTAGTGCGGAGTGAAGCAGTAATCCGCATTGGATGAGGAACAATCGGAGTGAATTTGGTTTGGTCGTGTGTGTGTATTCTATTAGTAAATTCAATGAATGTCTATTGAGCCCCCTTTACACTACTCGCTAACGGAATGAACGAAATCAACTTAATAATTAATTCACGCATAAAGCGGAATACGTACGGAAATTAGACGCTTCAATGCCACATGCAGTGGGCATCCGGAGCTTAACAATATGTAACCACTTGAGAATAAATTTACCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5903#0 CCGGCGGAGAAAGGTGGTCGGAGATTAACGATTTGTTGACGCAGCTGCACACGAAAATAT 60 consensus_5903#1 ------------------------------------------------------------ consensus_5903#0 CGGAAGCCGCCAACACTATCAGATGTAGCAGCTGCTGTCTGCGCCACCCGCGGAAACCGA 120 consensus_5903#1 ------------------------------------------------------------ consensus_5903#0 CCGGACGGGCACACTACGCGGCTAGGGAGTGTAGTTCATGCAAGATCCGTCATCCAGCAC 180 consensus_5903#1 ------------------------------------------------------------ consensus_5903#0 GGGAGGGCGACATTTGGGCTGAGACGAGCTTCCTCGGTTTGCGCTGGAAGTATCTCGCGA 240 consensus_5903#1 ------------------------------------------------------------ consensus_5903#0 TGATGGAGGGCAACGTGTACGACATTACGGAGTGGGCCAACTGTCAGAAGGGGGCCCTGT 300 consensus_5903#1 -------------------------------------------GTACCACGAATCCTTCA 17 * * * ** * consensus_5903#0 CCCACCTGCAGC-CCAATTCGCACATCGTGCAGTATCGCATTGTGCTTGGCAGCAGCTCC 359 consensus_5903#1 ACAATCTCTATTGCTTACTTACTCTCTGCAAAACGTTTTGTCGAGCGAGATA-CAGATTC 76 * * ** * * * * * * * * * * * ** * * *** * * consensus_5903#0 CAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAACATCAACCACAGCATCAGGCCGGCCAA 419 consensus_5903#1 --GGTGTCGCGTTCGTTCGTTCAACAACCGTTAGGT---CCCCTGTTTTCCGTTAGCAAA 131 * * ** * ***** * * * * ** * * * * ** ** consensus_5903#0 CCACTGGACAAGGATCAGATTGGACGCTCCCGCAAAGAACCGACTGCAAATGAACCGAAT 479 consensus_5903#1 CGCAGTGGCAAAGGTT---TTGGAATTT-----AAAATTTTCGATGTAAA--AGTTAAGC 181 * * *** * * ***** * *** ** *** * * consensus_5903#0 TTGGATGATTTTCTGAACAACATCTACGCCGGCCAGAACCAGCAAGCTTCATCGCAGAAT 539 consensus_5903#1 GTCGACATGTTCTCGTTCACCGTTT---CAGTACAAAACTCTC---CTTTCTCGATCGAT 235 * ** ** * ** * * * * * ** *** * *** *** ** consensus_5903#0 GCTTCGTCTAGGCGACGCTATCGTAGAAACTAAAACCCCAACCGCCACACGCCATTTG-C 598 consensus_5903#1 GTTTATCGTCCGTG-TGTGATTGTGTGTAGTGCGGAGTGAAGCAGTAATCCGCATTGGAT 294 * ** * * * * ** ** * * ** * * * **** * consensus_5903#0 GAAGAACGAGGGGATTGTTTTTCGCATC-TCACTCAACTCAACTCCACTTA-AACGTGAA 656 consensus_5903#1 GAGGAACAATCGGAGTGAATTTGGTTTGGTCGTGTGTGTGTATTCTATTAGTAAATTCAA 354 ** **** * *** ** *** * * ** * * ** * * ** * ** consensus_5903#0 TCCATGTTTTCTCCCCCGCCTTCTATAGACCCATTAACTCAACCCGATAAATTCGAACCA 716 consensus_5903#1 TGAATGTCTATTGAGCCCCCTTTACACTACTCGCTAACGGAATG-AACGAAATCAACTTA 413 * **** * * ** **** ** * **** ** * ** ** * * consensus_5903#0 CCAGTT--TTGATGGCATGACCCCAGGCAGGAGCCAAGGAGTCGCCGGTGTGTTTATGCG 774 consensus_5903#1 ATAATTAATTCACG-CATAAAGCGGAATACGTAC--GGAAATTA--GACGCTTCAATGC- 467 * ** ** * * *** * * * * * * * * * * * **** consensus_5903#0 CGTTTGAAATAGTACCACGAATCCTTCAACAATCTCTACCCCTTACTTACTCTCTGGAAA 834 consensus_5903#1 CACATGCAGTGGGCATCCGGAGCTT--AACAATATGTAACCACT----------TGAGAA 515 * ** * * * ** * * * ****** * ** ** * ** ** consensus_5903#0 CCGTTTTGTCGAGCGAGATACAGATTCGGTGTCGCGTTCGTTCGTTCGTTCAACAACCGT 894 consensus_5903#1 TAAATTTACCAA------------------------------------------------ 527 *** * * consensus_5903#0 TAGGTCCCCTGTATTCCGTTAGCAAGCAAAGTGGCAAAGGTTTTGGGAATTTA 947 consensus_5903#1 ----------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||