These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5904#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 793 fasta sequence [AGAATCGGCACGAGGTATAGGAGCAACGCGACAAGCCTTNCAAGATGTACAAAACAATCGCTCATCCTGCTCTCCTGTGCCCTGGCACTGACGCTGGCCGCACCGCCCGCACCGCTCACCAAACGCTCGCCGCAGGGGCGGCCCGGACTCGGAAGCGACCGTCGTGGCGCAGGACCAGATCATCAACGAGGGCGGCTCGTACGCGTACAACTACGAGACGAGCAACGGCATCAAGGCGCGCCAGACGAGCGACAACGGCGTGTCGGCGAACGGCGAGTACTCGTTCCTCGCCCCCGACGGTACCTCGTACTCGGTCGTGTACGTACGCGGACGAGAACGGATTCCAGCCGCAGGGCGCCCACCTGCCGACCGAGCCGCCAGCGCCCGAGCACGTGATCAAGCTGCTGGAGGATCTGCGCGCCAACCCGCCGTCCGATCCCGAGTTCGATCTGGCCTCGCTCGATGCCACCCTTGCCCGGCTTCGCGCCANCCAGGGGCTAGAAGCACCGAGTGAACCGAGAGAACAAGATGATGATGATGATGATGATGCAGGCAAGCAGGTTTGGTAGCAATAGCTTCAACCGGACCGCGTTGGACTCGCCGTCANCGTAAATCCCCCGGTATAGACCGCGCGCAGAAAAAGCTCCTCGCCGATNTGGCGCNATGGACTCACCTTGGTTGCAGGGACACGGCGAGGCGTACTACGACGCGTCCCTGTGGGGCTTCTCCTCCATCGTCCGAGGCACCTTCCCGGTCGATTAGTTAGTTTCAATTTAGTTTCAATTGTCCCTAG] [+] EMBL BX469677 [AGAATCGGCACGAGGTATAGGAGCAACGCGACAAGCCTTNCAAGATGTACAAAACAATCGCTCATCCTGCTCTCCTGTGCCCTGGCACTGACGCTGGCCGCACCGCCCGCACCGCTCACCAAACGCTCGCCGCAGGGGCGGCCCGGACTCGGAAGCGACCGTCGTGGCGCAGGACCAGATCATCAACGAGGGCGGCTCGTACGCGTACAACTACGAGACGAGCAACGGCATCAAGGCGCGCCAGACGAGCGACAACGGCGTGTCGGCGAACGGCGAGTACTCGTTCCTCGCCCCCGACGGTACCTCGTACTCGGTCGTGTACGTACGCGGACGAGAACGGATTCCAGCCGCAGGGCGCCCACCTGCCGACCGAGCCGCCAGCGCCCGAGCACGTGATCAAGCTGCTGGAGGATCTGCGCGCCAACCCGCCGTCCGATCCCGAGTTCGATCTGGCCTCGCTCGATGCCACCCTTGCCCGGCTTCGCGCCANCCAGGGGCTAGAAGCACCGAGTGAACCGAGAGAACAAGATGATGATGATGATGATGATGCAGGCAAGCAGGTTTGGTAGCAATAGCTTCAACCGGACCGCGTTGGACTCGCCGTCANCGTAAATCCCCCGGTATAGACCGCGCGCAGAAAAAGCTCCTCGCCGATNTGGCGCNATGGACTCACCTTGGTTGCAGGGACACGGCGAGGCGTA ] [+] EMBL BX622388 [ GTGCCCTGGCACTGACGCTGGCCGCACCGCCCGCACCGCTCACCAAACGCTCGCCGCA GGGCGGCCCGGACTCGGAAGCGACCGTCGTGGCGCAGGACCAGATCATCAACGAGGGCGGCTCGTACGCGTACAACTACGAGACGAGCAACGGCATCAAGGCGCGCCAGACGAGCGACAACGGCGTGTCGGCGAACGGCGAGTACTCGTTCCTCGCCCCCGACGGTACCTCGTACTCGGTCGTGTACGT CGCGGACGAGAACGGATTCCAGCCGCAGGGCGCCCACCTGCCGACCGAGCCGCCAGCGCCCGAGCACGTGATCAAGCTGCTGGAGGATCTGCGCGCCAACCCGCCGTCCGATCCCGAGTTCGATCTGGCCTCGCTCGATGCCACCCTTGCCCGGCTTCGCGCCACCCA GGGCTAGAAGCACCGAGTGAACCGAGAGAAC AGATGATGATGATGATGATGATGCA GCAAGCA GTTT GTA C ATAGCTTCAACC GACCGCGTTGGACTCGCC TCA CCT AATCCCCC GTCT CC C CCCACAACA CTCCTC CC AT TGCCCCCATTGCCTCACCTTG TGCA GGACAC GC AGCCGTACTACGACGCGTCCCTGTGGGGCTTCTCCTCCATCGTCCGAGGCACCTTCCCGGTCGATTAGTTAGTTTCAATTTAGTTTCAATTGTCCCTAG] consensusID : consensus_5904#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 662 fasta sequence [AACCAACCCAACCATCCCGCAAAGGAGCCAACGCGACAAGCCTTGAAGATGTACAAACAATCGCTCATCCTGCTCTCCTGTGCCCTGGCACTGACGCTGGCCGCACCGCCCGCACCGCTCACCAAACGCTCGCCGCAGGGCGGCCCGGACTCGGAAGCGACCGTCGTGGCGCAGGACCAGATCATCAACGAGGGCGGCTCGTACGCGTACAACTACGAGACGAGCAACGGCATCAAGGCGCGCCAGACGAGCGACAACGGCGTGTCGGCGAACGGCGAGTACTCGTTCCTCGCCCCCGACGGTACCTCGTACTCGGTCGTGTACGTCGCGGACGAGAACGGATTCCAGCCGCAGGGCGCCCACCTGCCGACCGAGCCGCCAGCGCCCGAGCACGTGATCAAGCTGCTGGAGGATCTGCGCGCCAACCCGCCGTCCGATCCCGAGTTCGATCTGGCCTCGCTCGATGCCACCCTTGCCCGGCTTCGCGCCACCCAGGGCTAGAAGCACCGAGTGAACCGAGAGAACAGATGATGATGATGATGATGATGCAGCAAGCAGTTTGTACATAGCTTCNACCGACCGCGTTGGACTCGCCTCACCTAATCCCCCGTCTCCCCCCACAACACTCCTCCCATTGNCCCCATTGCCTCACCTTGTGCAGG] [+] EMBL BX627916 [AACCAACCCAACCATCCCGCAAAGGAGCCAACGCGACAAGCCTTGAAGATGTACAAACAATCGCTCATCCTGCTCTCCTGTGCCCTGGCACTGACGCTGGCCGCACCGCCCGCACCGCTCACCAAACGCTCGCCGCAGGGCGGCCCGGACTCGGAAGCGACCGTCGTGGCGCAGGACCAGATCATCAACGAGGGCGGCTCGTACGCGTACAACTACGAGACGAGCAACGGCATCAAGGCGCGCCAGACGAGCGACAACGGCGTGTCGGCGAACGGCGAGTACTCGTTCCTCGCCCCCGACGGTACCTCGTACTCGGTCGTGTACGTCGCGGACGAGAACGGATTCCAGCCGCAGGGCGCCCACCTGCCGACCGAGCCGCCAGCGCCCGAGCACGTGATCAAGCTGCTGGAGGATCTGCGCGCCAACCCGCCGTCCGATCCCGAGTTCGATCTGGCCTCGCTCGATGCCACCCTTGCCCGGCTTCGCGCCACCCAGGGCTAGAAGCACCGAGTGAACCGAGAGAACAGATGATGATGATGATGATGATGCAGCAAGCAGTTTGTACATAGCTTCNACCGACCGCGTTGGACTCGCCTCACCTAATCCCCCGTCTCCCCCCACAACACTCCTCCCATTGNCCCCATTGCCTCACCTTGTGCAGG] [+] EMBL BX619117 [ GAGCCAACGCGACAAGCCTTGAAGATGTACAAACAATCGCTCATCCTGCTCTCCTGTGCCCTGGCACTGACGCTGGCCGCACCGCCCGCACCGCTCACCAAACGCTCGCCGCAGGGCGGCCCGGACTCGGAAGCGACCGTCGTGGCGCAGGACCAGATCATCAACGAGGGCGGCTCGTACGCGTACAACTACGAGACGAGCAACGGCATCAAGGCGCGCCAGACGAGCGACAACGGCGTGTCGGCGAACGGCGAGTACTCGTTCCTCGCCCCCGACGGTACCTCGTACTCGGTCGTGTACGTCGCGGACGAGAACGGATTCCAGCCGCAGGGCGCCCACCTGCCGACCGAGCCGCCAGCGCCCGAGCACGTGATCAAGCTGCTGGAGGATCTGCGCGCCAACCCGCCGTCCGATCCCGAGTNCGATCTGNCCTCGCTCGATGCCACCCTTGCCCGGCTTCGCGCCCCCCAGGGCTAGAAGCCCCGAGTGAACCGAGAGAACAGATGATGATGATGAT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5904#0 ----AGAATCGGCACGAGGTATAGGAGC-AACGCGACAAGCCTTNCAAGATGTACAAAAC 55 consensus_5904#1 AACCAACCCAACCATCCCGCAAAGGAGCCAACGCGACAAGCCTTG-AAGATGTACAAA-C 58 * ** * * ****** *************** ************ * consensus_5904#0 AATCGCTCATCCTGCTCTCCTGTGCCCTGGCACTGACGCTGGCCGCACCGCCCGCACCGC 115 consensus_5904#1 AATCGCTCATCCTGCTCTCCTGTGCCCTGGCACTGACGCTGGCCGCACCGCCCGCACCGC 118 ************************************************************ consensus_5904#0 TCACCAAACGCTCGCCGCAGGGGCGGCCCGGACTCGGAAGCGACCGTCGTGGCGCAGGAC 175 consensus_5904#1 TCACCAAACGCTCGCCGCAGGG-CGGCCCGGACTCGGAAGCGACCGTCGTGGCGCAGGAC 177 ********************** ************************************* consensus_5904#0 CAGATCATCAACGAGGGCGGCTCGTACGCGTACAACTACGAGACGAGCAACGGCATCAAG 235 consensus_5904#1 CAGATCATCAACGAGGGCGGCTCGTACGCGTACAACTACGAGACGAGCAACGGCATCAAG 237 ************************************************************ consensus_5904#0 GCGCGCCAGACGAGCGACAACGGCGTGTCGGCGAACGGCGAGTACTCGTTCCTCGCCCCC 295 consensus_5904#1 GCGCGCCAGACGAGCGACAACGGCGTGTCGGCGAACGGCGAGTACTCGTTCCTCGCCCCC 297 ************************************************************ consensus_5904#0 GACGGTACCTCGTACTCGGTCGTGTACGTACGCGGACGAGAACGGATTCCAGCCGCAGGG 355 consensus_5904#1 GACGGTACCTCGTACTCGGTCGTGTACGT-CGCGGACGAGAACGGATTCCAGCCGCAGGG 356 ***************************** ****************************** consensus_5904#0 CGCCCACCTGCCGACCGAGCCGCCAGCGCCCGAGCACGTGATCAAGCTGCTGGAGGATCT 415 consensus_5904#1 CGCCCACCTGCCGACCGAGCCGCCAGCGCCCGAGCACGTGATCAAGCTGCTGGAGGATCT 416 ************************************************************ consensus_5904#0 GCGCGCCAACCCGCCGTCCGATCCCGAGTTCGATCTGGCCTCGCTCGATGCCACCCTTGC 475 consensus_5904#1 GCGCGCCAACCCGCCGTCCGATCCCGAGTTCGATCTGGCCTCGCTCGATGCCACCCTTGC 476 ************************************************************ consensus_5904#0 CCGGCTTCGCGCCANCCAGGGGCTAGAAGCACCGAGTGAACCGAGAGAACAAGATGATGA 535 consensus_5904#1 CCGGCTTCGCGCCACCCAGGG-CTAGAAGCACCGAGTGAACCGAGAGAACA-GATGATGA 534 ************** ****** ***************************** ******** consensus_5904#0 TGATGATGATGATGCAGGCAAGCAGGTTTGGTAGCAATAGCTTCAACCGGACCGCGTTGG 595 consensus_5904#1 TGATGATGATGATGCAG-CAAGCAG--TTTGTAC--ATAGCTTCNACCG-ACCGCGTTGG 588 ***************** ******* ** *** ******** **** ********** consensus_5904#0 ACTCGCCGTCANCGTAAATCCCCCGGTATAGACCGCGCGCAGAAAAAGCTCCTCGCCGAT 655 consensus_5904#1 ACTCGCC-TCACCT--AATCCCCCGTCTCCCCCCAC--------AACACTCCTCCCA--- 634 ******* *** * ********* ** * ** ****** * consensus_5904#0 NTGGCGCNATGGACTCACCTTGGTTGCAGGGACACGGCGAGGCGTACTACGACGCGTCCC 715 consensus_5904#1 TTGNCCCCATTGCCTCACCTTG--TGCAGG------------------------------ 662 ** * * ** * ********* ****** consensus_5904#0 TGTGGGGCTTCTCCTCCATCGTCCGAGGCACCTTCCCGGTCGATTAGTTAGTTTCAATTT 775 consensus_5904#1 ------------------------------------------------------------ consensus_5904#0 AGTTTCAATTGTCCCTAG 793 consensus_5904#1 ------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||