These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5905#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1003 fasta sequence [GTTTGTTGCAGTTGTTAGAAATCAAGAAAAAGCAATCATCAATTTCCGTCAGATAATCCCGGCCGTGTGCGTGCGTGCGTTGTGGTGAGGTGTG-AACAGGTGTCCAAGTCTATCAACAGCCACACAGAATGGGCGAACAACCGACCGTTTCCTTGGAGGCGCTTCAATCCGCCGGCAATACGCTAGAACGCCACGGTTCCATCGATGCCGATGTGCCGGGTTTACTAGAGCTGACGGGAGTAACGCAAGCCGGCACCCCGACTGCAAGCGGCTTGAGCGACTTTGACTACCAGCAGCTGGCCAACCTGTCGATGGGCTTCAAGGACCTGAATCAGCTGTGCACGGTCAACAAGGTTCCTATACCGTCGGAAATAATGGAACATTTTAACCATATAAAATGTCACTGTATGATGGGACTGTTTCCCGAAATTGGACGTGCGTGGCTTACAATCGACACGGACTTATATATCTGGACGTATGAAAATGCACGCGATGTGGCCTACTTCGATGGGCTGTCCCAGGTGATCATAAGCGTCGGGCTGGTGACGCCCAAGCCGGGCCTGTTCGTGGCGGACGTAAAGTATCTGCTGATTCTAACGACTCCGATCGAAATCGTCGTGCTCGGCGTGACGTTCGGTGACGCAAACAGCGGGACGCCCAACCGCAGCATGACCGCGTCCCAGGGCACTG-AGGAGATGCAGCTAATGCACACGCCCATTTTCGTGCTCAACACGGACAACGTTGCCATCATGTGCGTGCAGGGTACGGAGGATGGGCGGATTTTCCTCGGCGGCCGGGACGGTTGCCTGTACGAGGTGGCGTACCAGGCGGAATCGAACTGGTTCGGCAAGCGGTGCCGCAAGATCAACCACTCGCAGGGCTTGATGTCCCATCTGGTGCCGGGCATCTTCAAAATATTCACCGAAACCAACTCGGTGGAAAAGATTGTGGTGGACAACACGCGCAACTTGCTGTACGTGCTCATGTCGAAAAAAAAGATCGA] [+] EMBL CNS09BY1 [GTTTGTTGCAGTTGTTAGAAATCAAGAAAAAGCAATCATCAATTTCCGTCAGATAATCCCGGCCGTGTGCGTGCGTGCGTTGTGGTGAGGTGTG AACAGGTGTCCAAGTCTATCAACAGCCACACAGAATGGGCGAACAACCGACCGTTTCCTTGGAGGCGCTTCAATCCGCCGGCAATACGCTAGAACGCCACGGTTCCATCGATGCCGATGTGCCGGGTTTACTAGAGCTGACGGGAGTAACGCAAGCCGGCACCCCGACTGCAAGCGGCTTGAGCGACTTTGACTACCAGCAGCTGGCCAACCTGTCGATGGGCTTCAAGGACCTGAATCAGCTGTGCACGGTCAACAAGGTTCCTATACCGTCGGAAATAATGGAACATTTTAACCATATAAAATGTCACTGTATGATGGGACTGTTTCCCGAAATTGGACGTGCGTGGCTTACAATCGACACGGACTTATATATCTGGACGTATGAAAATGCACGCGATGTGGCCTACTTCGATGGGCTGTCCCAGGTGATCATAAGCGTCGGGCTGGTGACGCCCAAGCCGGGCCTGTTCGTGGCGGACGTAAAGTATCTGCTGATTCTAACGACTCCGATCGAAATCGTCGTGCTCGGCGTGACGTTCGGTGACGCAAACAGCGGGACGCCCAACCGCAGCATGACCGCGTCCCAGGGCACTG AGGAGATGCAGCTAATGCACACGCCCATTTTCGTGCTCAACACGGACAACGTTGCCATCATGTGCGTGCAGGGTACGGAGGATGGGCGGATTTTCCTCGGCGGCCGGGACGGTTGCCTGTACGAGGTGGCGTACCAGGCGGAATCGAACTGGTTCGGCAAGCGGTGCCGCAAGATCAACCACTCGCAGGGCTTGATGTCCCATCTGGTGCCGGGCATCTTCAAAATATTCACCGAAACCAACTCGGTGGAAAAGATTGTGGTGGACAACACGCGCAACTTGCTGTACGTGCTCATGTCGAAAAAAAAGATCGA] [+] EMBL BM632207 [ ccggcaAGTTGTTAGAAATCAAGAAAAAGCAATCATCAATTTCCGTCAGATAATCCCGGCTGTGTGCGTGCGTGCGTTGTGGTGAGGTGTGAAACAGGTGTCCAAGTCTATCAACAGCCACACAGAATGGGCGAACAACCGACCGTTTCCTTGGAGGCGCTTCAATCCGCCGGCAATACGCTAGAACGCCACGGTTCCATCGATGCCGATGTGCCGGGTTTACTAGAGCTGACGGGAGTAACGCAAGCCGGCACTCCGACTGCAAGCGGCTTGAGCGACTTTGACTACCAGCAGCTGGCCAACCTGTCGATGGGCTTCAAGGACCTGAATCAACTGTGCACGGTCAACAAGGTTCCTATACCGTCGGAAATAATGGAACATTTTAACCATATAAAATGTCACTGTATGATGGGACTGTTTCCCGAAATTGGACGTGCGTGGCTTACAATCGACACGGACTTATATATCTGGACGTATGAAAATGCACGCGATGTGGCCTACTTCGATGGGCTCTCCCAGGTGATCATAAGCGTCGGGCTGGTGACGCCCAAGCCGGGCCTGTTCGTGGCGGACGTAAAGTATCTGCTGATTCTAACGACTCCGATCGAAATCGTCGTGCTCGGCGTGACGTTCGGTGACGCAAACAGCGGGACGCCCAACCGCAGCATGACCGCGTCCCAGGGCACTGAAGGAGATGCAGCTAATGCACA ] [+] EMBL CNS09DNP [ GTGAGGTGTG AACAGGTGTCCAAGTCTATCAACAGCCACACAGAATGGGCGAACAACCGACCGTTTCCTTGGAGGCGCTTCAATCCGCCGGCAATACGCTAGAACGGGACGGTTCCATCGATGCCGATGTGCCGGGTTTACTAGAGCTGACGGGAGTAACGCAAGCCGGCACCCCGACTGCAAGCGGCTTGAGCGACTTTGACTACCAGCAGCTGGCCAACCTGTCGATGGGCTTCAAGGACCTGAATCAGCTGTGCACGGTCAACAAGGTTCCTATACCGTCGGAAATAATGGAACATTTTAACCATATAAAATGTCACTGTATGATGGGACTGTTTCCCGAAATTGGACGTGCGTGGCTTACAATCGACACGGACT ] consensusID : consensus_5905#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 974 fasta sequence [ATACCGTCGGAAATAATGGAACATTTTAACCATATAAAATGTCACTGTATGATGGGACTGTTTCCCGAAATTGGACGTGCGTGGCTTACAATCGACACGGACTTATATATCTGGACGTATGAAAATGCACGCGATGTGGCCTACTTCGATGGGCTGTCCCAGGTGATCATAAGCGTCGGGCTGGTGACGCCCAAGCCGGGCCTGTTCGTGGCGGACGTAAAGTATCTGCTGATTCTAACGACTCCGATCGAAATCGTCGTGCTCGGCGTGACGTTCGGTGACGCAAACAGCGGACGCCCAACCGCAGCATGACCGCGTCCCAGGGCACTGAGGAGATGCAGCTAATGCACACGCCCATTTTCGTGCTCAACACGGACAACGTTGCCATCATGTGCGTGCAGGGTACGGAGGATGGGCGGATTTTCCTCGGCGGCCGGGACGGTTGCCTGTACGAGGTGGCGTACCAGGCGGAATCGAACTGGTTCGGCAAGCGGTGCCGCAAGATCAACCACTCGCAGGGCTTGATGTCCCATCTGGTGCCGGGCATCTTCAAAATATTCACCGAAACCAACTCGGTGGAAAAGATTGTGGTGGACAACACGCGCAACTTGCTGTACGTGCTCATGTCGAAGGGTTCGATCGAGGCGTGGGACATTGGGAAGGACGCCGGAAGTACGCGACGCATCGCCCGAGTGTCGTACAAGGACATCATCGCGAGTGCGAGCGCCATTTTGCGCACGATCGATCCGTCCGTCTTTCATCCGATCACCGCCATCTGCCCACTAACGGCGGAAGACTCGTCCAGTTTGCATCTGGTGGCAATTGCGGAGAGTGGTGTCCGGTTCTACTTCTCTACGGTACCGCTACACCTGCACGGGTTCTACATCCAGCAGCAGCAAATGCTACAACAGCAGCAGCAGCAACAGCAGCTACTGTGCAACAGCAGCAACACGAACTTAGATAATGTTTTCAGA] [-] EMBL CNS09BY2 [ATACCGTCGGAAATAATGGAACATTTTAACCATATAAAATGTCACTGTATGATGGGACTGTTTCCCGAAATTGGACGTGCGTGGCTTACAATCGACACGGACTTATATATCTGGACGTATGAAAATGCACGCGATGTGGCCTACTTCGATGGGCTGTCCCAGGTGATCATAAGCGTCGGGCTGGTGACGCCCAAGCCGGGCCTGTTCGTGGCGGACGTAAAGTATCTGCTGATTCTAACGACTCCGATCGAAATCGTCGTGCTCGGCGTGACGTTCGGTGACGCAAACAGCGGACGCCCAACCGCAGCATGACCGCGTCCCAGGGCACTGAGGAGATGCAGCTAATGCACACGCCCATTTTCGTGCTCAACACGGACAACGTTGCCATCATGTGCGTGCAGGGTACGGAGGATGGGCGGATTTTCCTCGGCGGCCGGGACGGTTGCCTGTACGAGGTGGCGTACCAGGCGGAATCGAACTGGTTCGGCAAGCGGTGCCGCAAGATCAACCACTCGCAGGGCTTGATGTCCCATCTGGTGCCGGGCATCTTCAAAATATTCACCGAAACCAACTCGGTGGAAAAGATTGTGGTGGACAACACGCGCAACTTGCTGTACGTGCTCATGTCGAAGGGTTCGATCGAGGCGTGGGACATTGGGAAGGACGCCGGAAGTACGCGACGCATCGCCCGAGTGTCGTACAAGGACATCATCGCGAGTGCGAGCGCCATTTTGCGCACGATCGATCCGTCCGTCTTTCATCCGATCACCGCCATCTGCCCACTAACGGCGGAAGACTCGTCCAGTTTGCATCTGGTGGCAATTGCGGAGAGTGGTGTCCGGTTCTACTTCTCTACGGTACCGCTACACCTGCACGGGTTCTACATCCAGCAGCAGCAAATGCTACAACAGCAGCAGCAGCAACAGCAGCTACTGTGCAACAGCAGCAACACGAACTTAGATAATGTTTTCAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5905#0 GTTTGTTGCAGTTGTTAGAAATCAAGAAAAAGCAATCATCAATTTCCGTCAGATAATCCC 60 consensus_5905#1 ------------------------------------------------------------ consensus_5905#0 GGCCGTGTGCGTGCGTGCGTTGTGGTGAGGTGTGAACAGGTGTCCAAGTCTATCAACAGC 120 consensus_5905#1 ------------------------------------------------------------ consensus_5905#0 CACACAGAATGGGCGAACAACCGACCGTTTCCTTGGAGGCGCTTCAATCCGCCGGCAATA 180 consensus_5905#1 ------------------------------------------------------------ consensus_5905#0 CGCTAGAACGCCACGGTTCCATCGATGCCGATGTGCCGGGTTTACTAGAGCTGACGGGAG 240 consensus_5905#1 ------------------------------------------------------------ consensus_5905#0 TAACGCAAGCCGGCACCCCGACTGCAAGCGGCTTGAGCGACTTTGACTACCAGCAGCTGG 300 consensus_5905#1 ------------------------------------------------------------ consensus_5905#0 CCAACCTGTCGATGGGCTTCAAGGACCTGAATCAGCTGTGCACGGTCAACAAGGTTCCTA 360 consensus_5905#1 -----------------------------------------------------------A 1 * consensus_5905#0 TACCGTCGGAAATAATGGAACATTTTAACCATATAAAATGTCACTGTATGATGGGACTGT 420 consensus_5905#1 TACCGTCGGAAATAATGGAACATTTTAACCATATAAAATGTCACTGTATGATGGGACTGT 61 ************************************************************ consensus_5905#0 TTCCCGAAATTGGACGTGCGTGGCTTACAATCGACACGGACTTATATATCTGGACGTATG 480 consensus_5905#1 TTCCCGAAATTGGACGTGCGTGGCTTACAATCGACACGGACTTATATATCTGGACGTATG 121 ************************************************************ consensus_5905#0 AAAATGCACGCGATGTGGCCTACTTCGATGGGCTGTCCCAGGTGATCATAAGCGTCGGGC 540 consensus_5905#1 AAAATGCACGCGATGTGGCCTACTTCGATGGGCTGTCCCAGGTGATCATAAGCGTCGGGC 181 ************************************************************ consensus_5905#0 TGGTGACGCCCAAGCCGGGCCTGTTCGTGGCGGACGTAAAGTATCTGCTGATTCTAACGA 600 consensus_5905#1 TGGTGACGCCCAAGCCGGGCCTGTTCGTGGCGGACGTAAAGTATCTGCTGATTCTAACGA 241 ************************************************************ consensus_5905#0 CTCCGATCGAAATCGTCGTGCTCGGCGTGACGTTCGGTGACGCAAACAGCGGGACGCCCA 660 consensus_5905#1 CTCCGATCGAAATCGTCGTGCTCGGCGTGACGTTCGGTGACGCAAACAGCGG-ACGCCCA 300 **************************************************** ******* consensus_5905#0 ACCGCAGCATGACCGCGTCCCAGGGCACTGAGGAGATGCAGCTAATGCACACGCCCATTT 720 consensus_5905#1 ACCGCAGCATGACCGCGTCCCAGGGCACTGAGGAGATGCAGCTAATGCACACGCCCATTT 360 ************************************************************ consensus_5905#0 TCGTGCTCAACACGGACAACGTTGCCATCATGTGCGTGCAGGGTACGGAGGATGGGCGGA 780 consensus_5905#1 TCGTGCTCAACACGGACAACGTTGCCATCATGTGCGTGCAGGGTACGGAGGATGGGCGGA 420 ************************************************************ consensus_5905#0 TTTTCCTCGGCGGCCGGGACGGTTGCCTGTACGAGGTGGCGTACCAGGCGGAATCGAACT 840 consensus_5905#1 TTTTCCTCGGCGGCCGGGACGGTTGCCTGTACGAGGTGGCGTACCAGGCGGAATCGAACT 480 ************************************************************ consensus_5905#0 GGTTCGGCAAGCGGTGCCGCAAGATCAACCACTCGCAGGGCTTGATGTCCCATCTGGTGC 900 consensus_5905#1 GGTTCGGCAAGCGGTGCCGCAAGATCAACCACTCGCAGGGCTTGATGTCCCATCTGGTGC 540 ************************************************************ consensus_5905#0 CGGGCATCTTCAAAATATTCACCGAAACCAACTCGGTGGAAAAGATTGTGGTGGACAACA 960 consensus_5905#1 CGGGCATCTTCAAAATATTCACCGAAACCAACTCGGTGGAAAAGATTGTGGTGGACAACA 600 ************************************************************ consensus_5905#0 CGCGCAACTTGCTGTACGTGCTCATGTCGAAAAAAAAGATCGA----------------- 1003 consensus_5905#1 CGCGCAACTTGCTGTACGTGCTCATGTCGAAGGGTTCGATCGAGGCGTGGGACATTGGGA 660 ******************************* ****** consensus_5905#0 ------------------------------------------------------------ consensus_5905#1 AGGACGCCGGAAGTACGCGACGCATCGCCCGAGTGTCGTACAAGGACATCATCGCGAGTG 720 consensus_5905#0 ------------------------------------------------------------ consensus_5905#1 CGAGCGCCATTTTGCGCACGATCGATCCGTCCGTCTTTCATCCGATCACCGCCATCTGCC 780 consensus_5905#0 ------------------------------------------------------------ consensus_5905#1 CACTAACGGCGGAAGACTCGTCCAGTTTGCATCTGGTGGCAATTGCGGAGAGTGGTGTCC 840 consensus_5905#0 ------------------------------------------------------------ consensus_5905#1 GGTTCTACTTCTCTACGGTACCGCTACACCTGCACGGGTTCTACATCCAGCAGCAGCAAA 900 consensus_5905#0 ------------------------------------------------------------ consensus_5905#1 TGCTACAACAGCAGCAGCAGCAACAGCAGCTACTGTGCAACAGCAGCAACACGAACTTAG 960 consensus_5905#0 -------------- consensus_5905#1 ATAATGTTTTCAGA 974 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||