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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5905#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1003 fasta sequence
[GTTTGTTGCAGTTGTTAGAAATCAAGAAAAAGCAATCATCAATTTCCGTCAGATAATCCCGGCCGTGTGCGTGCGTGCGTTGTGGTGAGGTGTG-AACAGGTGTCCAAGTCTATCAACAGCCACACAGAATGGGCGAACAACCGACCGTTTCCTTGGAGGCGCTTCAATCCGCCGGCAATACGCTAGAACGCCACGGTTCCATCGATGCCGATGTGCCGGGTTTACTAGAGCTGACGGGAGTAACGCAAGCCGGCACCCCGACTGCAAGCGGCTTGAGCGACTTTGACTACCAGCAGCTGGCCAACCTGTCGATGGGCTTCAAGGACCTGAATCAGCTGTGCACGGTCAACAAGGTTCCTATACCGTCGGAAATAATGGAACATTTTAACCATATAAAATGTCACTGTATGATGGGACTGTTTCCCGAAATTGGACGTGCGTGGCTTACAATCGACACGGACTTATATATCTGGACGTATGAAAATGCACGCGATGTGGCCTACTTCGATGGGCTGTCCCAGGTGATCATAAGCGTCGGGCTGGTGACGCCCAAGCCGGGCCTGTTCGTGGCGGACGTAAAGTATCTGCTGATTCTAACGACTCCGATCGAAATCGTCGTGCTCGGCGTGACGTTCGGTGACGCAAACAGCGGGACGCCCAACCGCAGCATGACCGCGTCCCAGGGCACTG-AGGAGATGCAGCTAATGCACACGCCCATTTTCGTGCTCAACACGGACAACGTTGCCATCATGTGCGTGCAGGGTACGGAGGATGGGCGGATTTTCCTCGGCGGCCGGGACGGTTGCCTGTACGAGGTGGCGTACCAGGCGGAATCGAACTGGTTCGGCAAGCGGTGCCGCAAGATCAACCACTCGCAGGGCTTGATGTCCCATCTGGTGCCGGGCATCTTCAAAATATTCACCGAAACCAACTCGGTGGAAAAGATTGTGGTGGACAACACGCGCAACTTGCTGTACGTGCTCATGTCGAAAAAAAAGATCGA]
[+] EMBL CNS09BY1 [GTTTGTTGCAGTTGTTAGAAATCAAGAAAAAGCAATCATCAATTTCCGTCAGATAATCCCGGCCGTGTGCGTGCGTGCGTTGTGGTGAGGTGTG AACAGGTGTCCAAGTCTATCAACAGCCACACAGAATGGGCGAACAACCGACCGTTTCCTTGGAGGCGCTTCAATCCGCCGGCAATACGCTAGAACGCCACGGTTCCATCGATGCCGATGTGCCGGGTTTACTAGAGCTGACGGGAGTAACGCAAGCCGGCACCCCGACTGCAAGCGGCTTGAGCGACTTTGACTACCAGCAGCTGGCCAACCTGTCGATGGGCTTCAAGGACCTGAATCAGCTGTGCACGGTCAACAAGGTTCCTATACCGTCGGAAATAATGGAACATTTTAACCATATAAAATGTCACTGTATGATGGGACTGTTTCCCGAAATTGGACGTGCGTGGCTTACAATCGACACGGACTTATATATCTGGACGTATGAAAATGCACGCGATGTGGCCTACTTCGATGGGCTGTCCCAGGTGATCATAAGCGTCGGGCTGGTGACGCCCAAGCCGGGCCTGTTCGTGGCGGACGTAAAGTATCTGCTGATTCTAACGACTCCGATCGAAATCGTCGTGCTCGGCGTGACGTTCGGTGACGCAAACAGCGGGACGCCCAACCGCAGCATGACCGCGTCCCAGGGCACTG AGGAGATGCAGCTAATGCACACGCCCATTTTCGTGCTCAACACGGACAACGTTGCCATCATGTGCGTGCAGGGTACGGAGGATGGGCGGATTTTCCTCGGCGGCCGGGACGGTTGCCTGTACGAGGTGGCGTACCAGGCGGAATCGAACTGGTTCGGCAAGCGGTGCCGCAAGATCAACCACTCGCAGGGCTTGATGTCCCATCTGGTGCCGGGCATCTTCAAAATATTCACCGAAACCAACTCGGTGGAAAAGATTGTGGTGGACAACACGCGCAACTTGCTGTACGTGCTCATGTCGAAAAAAAAGATCGA]
[+] EMBL BM632207 [ ccggcaAGTTGTTAGAAATCAAGAAAAAGCAATCATCAATTTCCGTCAGATAATCCCGGCTGTGTGCGTGCGTGCGTTGTGGTGAGGTGTGAAACAGGTGTCCAAGTCTATCAACAGCCACACAGAATGGGCGAACAACCGACCGTTTCCTTGGAGGCGCTTCAATCCGCCGGCAATACGCTAGAACGCCACGGTTCCATCGATGCCGATGTGCCGGGTTTACTAGAGCTGACGGGAGTAACGCAAGCCGGCACTCCGACTGCAAGCGGCTTGAGCGACTTTGACTACCAGCAGCTGGCCAACCTGTCGATGGGCTTCAAGGACCTGAATCAACTGTGCACGGTCAACAAGGTTCCTATACCGTCGGAAATAATGGAACATTTTAACCATATAAAATGTCACTGTATGATGGGACTGTTTCCCGAAATTGGACGTGCGTGGCTTACAATCGACACGGACTTATATATCTGGACGTATGAAAATGCACGCGATGTGGCCTACTTCGATGGGCTCTCCCAGGTGATCATAAGCGTCGGGCTGGTGACGCCCAAGCCGGGCCTGTTCGTGGCGGACGTAAAGTATCTGCTGATTCTAACGACTCCGATCGAAATCGTCGTGCTCGGCGTGACGTTCGGTGACGCAAACAGCGGGACGCCCAACCGCAGCATGACCGCGTCCCAGGGCACTGAAGGAGATGCAGCTAATGCACA ]
[+] EMBL CNS09DNP [ GTGAGGTGTG AACAGGTGTCCAAGTCTATCAACAGCCACACAGAATGGGCGAACAACCGACCGTTTCCTTGGAGGCGCTTCAATCCGCCGGCAATACGCTAGAACGGGACGGTTCCATCGATGCCGATGTGCCGGGTTTACTAGAGCTGACGGGAGTAACGCAAGCCGGCACCCCGACTGCAAGCGGCTTGAGCGACTTTGACTACCAGCAGCTGGCCAACCTGTCGATGGGCTTCAAGGACCTGAATCAGCTGTGCACGGTCAACAAGGTTCCTATACCGTCGGAAATAATGGAACATTTTAACCATATAAAATGTCACTGTATGATGGGACTGTTTCCCGAAATTGGACGTGCGTGGCTTACAATCGACACGGACT ]
consensusID : consensus_5905#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 974 fasta sequence
[ATACCGTCGGAAATAATGGAACATTTTAACCATATAAAATGTCACTGTATGATGGGACTGTTTCCCGAAATTGGACGTGCGTGGCTTACAATCGACACGGACTTATATATCTGGACGTATGAAAATGCACGCGATGTGGCCTACTTCGATGGGCTGTCCCAGGTGATCATAAGCGTCGGGCTGGTGACGCCCAAGCCGGGCCTGTTCGTGGCGGACGTAAAGTATCTGCTGATTCTAACGACTCCGATCGAAATCGTCGTGCTCGGCGTGACGTTCGGTGACGCAAACAGCGGACGCCCAACCGCAGCATGACCGCGTCCCAGGGCACTGAGGAGATGCAGCTAATGCACACGCCCATTTTCGTGCTCAACACGGACAACGTTGCCATCATGTGCGTGCAGGGTACGGAGGATGGGCGGATTTTCCTCGGCGGCCGGGACGGTTGCCTGTACGAGGTGGCGTACCAGGCGGAATCGAACTGGTTCGGCAAGCGGTGCCGCAAGATCAACCACTCGCAGGGCTTGATGTCCCATCTGGTGCCGGGCATCTTCAAAATATTCACCGAAACCAACTCGGTGGAAAAGATTGTGGTGGACAACACGCGCAACTTGCTGTACGTGCTCATGTCGAAGGGTTCGATCGAGGCGTGGGACATTGGGAAGGACGCCGGAAGTACGCGACGCATCGCCCGAGTGTCGTACAAGGACATCATCGCGAGTGCGAGCGCCATTTTGCGCACGATCGATCCGTCCGTCTTTCATCCGATCACCGCCATCTGCCCACTAACGGCGGAAGACTCGTCCAGTTTGCATCTGGTGGCAATTGCGGAGAGTGGTGTCCGGTTCTACTTCTCTACGGTACCGCTACACCTGCACGGGTTCTACATCCAGCAGCAGCAAATGCTACAACAGCAGCAGCAGCAACAGCAGCTACTGTGCAACAGCAGCAACACGAACTTAGATAATGTTTTCAGA]
[-] EMBL CNS09BY2 [ATACCGTCGGAAATAATGGAACATTTTAACCATATAAAATGTCACTGTATGATGGGACTGTTTCCCGAAATTGGACGTGCGTGGCTTACAATCGACACGGACTTATATATCTGGACGTATGAAAATGCACGCGATGTGGCCTACTTCGATGGGCTGTCCCAGGTGATCATAAGCGTCGGGCTGGTGACGCCCAAGCCGGGCCTGTTCGTGGCGGACGTAAAGTATCTGCTGATTCTAACGACTCCGATCGAAATCGTCGTGCTCGGCGTGACGTTCGGTGACGCAAACAGCGGACGCCCAACCGCAGCATGACCGCGTCCCAGGGCACTGAGGAGATGCAGCTAATGCACACGCCCATTTTCGTGCTCAACACGGACAACGTTGCCATCATGTGCGTGCAGGGTACGGAGGATGGGCGGATTTTCCTCGGCGGCCGGGACGGTTGCCTGTACGAGGTGGCGTACCAGGCGGAATCGAACTGGTTCGGCAAGCGGTGCCGCAAGATCAACCACTCGCAGGGCTTGATGTCCCATCTGGTGCCGGGCATCTTCAAAATATTCACCGAAACCAACTCGGTGGAAAAGATTGTGGTGGACAACACGCGCAACTTGCTGTACGTGCTCATGTCGAAGGGTTCGATCGAGGCGTGGGACATTGGGAAGGACGCCGGAAGTACGCGACGCATCGCCCGAGTGTCGTACAAGGACATCATCGCGAGTGCGAGCGCCATTTTGCGCACGATCGATCCGTCCGTCTTTCATCCGATCACCGCCATCTGCCCACTAACGGCGGAAGACTCGTCCAGTTTGCATCTGGTGGCAATTGCGGAGAGTGGTGTCCGGTTCTACTTCTCTACGGTACCGCTACACCTGCACGGGTTCTACATCCAGCAGCAGCAAATGCTACAACAGCAGCAGCAGCAACAGCAGCTACTGTGCAACAGCAGCAACACGAACTTAGATAATGTTTTCAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5905#0 GTTTGTTGCAGTTGTTAGAAATCAAGAAAAAGCAATCATCAATTTCCGTCAGATAATCCC 60
consensus_5905#1 ------------------------------------------------------------
consensus_5905#0 GGCCGTGTGCGTGCGTGCGTTGTGGTGAGGTGTGAACAGGTGTCCAAGTCTATCAACAGC 120
consensus_5905#1 ------------------------------------------------------------
consensus_5905#0 CACACAGAATGGGCGAACAACCGACCGTTTCCTTGGAGGCGCTTCAATCCGCCGGCAATA 180
consensus_5905#1 ------------------------------------------------------------
consensus_5905#0 CGCTAGAACGCCACGGTTCCATCGATGCCGATGTGCCGGGTTTACTAGAGCTGACGGGAG 240
consensus_5905#1 ------------------------------------------------------------
consensus_5905#0 TAACGCAAGCCGGCACCCCGACTGCAAGCGGCTTGAGCGACTTTGACTACCAGCAGCTGG 300
consensus_5905#1 ------------------------------------------------------------
consensus_5905#0 CCAACCTGTCGATGGGCTTCAAGGACCTGAATCAGCTGTGCACGGTCAACAAGGTTCCTA 360
consensus_5905#1 -----------------------------------------------------------A 1
*
consensus_5905#0 TACCGTCGGAAATAATGGAACATTTTAACCATATAAAATGTCACTGTATGATGGGACTGT 420
consensus_5905#1 TACCGTCGGAAATAATGGAACATTTTAACCATATAAAATGTCACTGTATGATGGGACTGT 61
************************************************************
consensus_5905#0 TTCCCGAAATTGGACGTGCGTGGCTTACAATCGACACGGACTTATATATCTGGACGTATG 480
consensus_5905#1 TTCCCGAAATTGGACGTGCGTGGCTTACAATCGACACGGACTTATATATCTGGACGTATG 121
************************************************************
consensus_5905#0 AAAATGCACGCGATGTGGCCTACTTCGATGGGCTGTCCCAGGTGATCATAAGCGTCGGGC 540
consensus_5905#1 AAAATGCACGCGATGTGGCCTACTTCGATGGGCTGTCCCAGGTGATCATAAGCGTCGGGC 181
************************************************************
consensus_5905#0 TGGTGACGCCCAAGCCGGGCCTGTTCGTGGCGGACGTAAAGTATCTGCTGATTCTAACGA 600
consensus_5905#1 TGGTGACGCCCAAGCCGGGCCTGTTCGTGGCGGACGTAAAGTATCTGCTGATTCTAACGA 241
************************************************************
consensus_5905#0 CTCCGATCGAAATCGTCGTGCTCGGCGTGACGTTCGGTGACGCAAACAGCGGGACGCCCA 660
consensus_5905#1 CTCCGATCGAAATCGTCGTGCTCGGCGTGACGTTCGGTGACGCAAACAGCGG-ACGCCCA 300
**************************************************** *******
consensus_5905#0 ACCGCAGCATGACCGCGTCCCAGGGCACTGAGGAGATGCAGCTAATGCACACGCCCATTT 720
consensus_5905#1 ACCGCAGCATGACCGCGTCCCAGGGCACTGAGGAGATGCAGCTAATGCACACGCCCATTT 360
************************************************************
consensus_5905#0 TCGTGCTCAACACGGACAACGTTGCCATCATGTGCGTGCAGGGTACGGAGGATGGGCGGA 780
consensus_5905#1 TCGTGCTCAACACGGACAACGTTGCCATCATGTGCGTGCAGGGTACGGAGGATGGGCGGA 420
************************************************************
consensus_5905#0 TTTTCCTCGGCGGCCGGGACGGTTGCCTGTACGAGGTGGCGTACCAGGCGGAATCGAACT 840
consensus_5905#1 TTTTCCTCGGCGGCCGGGACGGTTGCCTGTACGAGGTGGCGTACCAGGCGGAATCGAACT 480
************************************************************
consensus_5905#0 GGTTCGGCAAGCGGTGCCGCAAGATCAACCACTCGCAGGGCTTGATGTCCCATCTGGTGC 900
consensus_5905#1 GGTTCGGCAAGCGGTGCCGCAAGATCAACCACTCGCAGGGCTTGATGTCCCATCTGGTGC 540
************************************************************
consensus_5905#0 CGGGCATCTTCAAAATATTCACCGAAACCAACTCGGTGGAAAAGATTGTGGTGGACAACA 960
consensus_5905#1 CGGGCATCTTCAAAATATTCACCGAAACCAACTCGGTGGAAAAGATTGTGGTGGACAACA 600
************************************************************
consensus_5905#0 CGCGCAACTTGCTGTACGTGCTCATGTCGAAAAAAAAGATCGA----------------- 1003
consensus_5905#1 CGCGCAACTTGCTGTACGTGCTCATGTCGAAGGGTTCGATCGAGGCGTGGGACATTGGGA 660
******************************* ******
consensus_5905#0 ------------------------------------------------------------
consensus_5905#1 AGGACGCCGGAAGTACGCGACGCATCGCCCGAGTGTCGTACAAGGACATCATCGCGAGTG 720
consensus_5905#0 ------------------------------------------------------------
consensus_5905#1 CGAGCGCCATTTTGCGCACGATCGATCCGTCCGTCTTTCATCCGATCACCGCCATCTGCC 780
consensus_5905#0 ------------------------------------------------------------
consensus_5905#1 CACTAACGGCGGAAGACTCGTCCAGTTTGCATCTGGTGGCAATTGCGGAGAGTGGTGTCC 840
consensus_5905#0 ------------------------------------------------------------
consensus_5905#1 GGTTCTACTTCTCTACGGTACCGCTACACCTGCACGGGTTCTACATCCAGCAGCAGCAAA 900
consensus_5905#0 ------------------------------------------------------------
consensus_5905#1 TGCTACAACAGCAGCAGCAGCAACAGCAGCTACTGTGCAACAGCAGCAACACGAACTTAG 960
consensus_5905#0 --------------
consensus_5905#1 ATAATGTTTTCAGA 974
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||