cluster # 5907

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Anopheles gambiae
cluster # 5907 cluster # 5907 Sequences # 4 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5907#0 length = 464 sequences # 1
consensus_5907#1 length = 356 sequences # 1

consensus_5907#2 length = 349 sequences # 1
consensus_5907#3 length = 163 sequences # 1

consensusID : consensus_5907#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 464
fasta sequence

                              [ATCGCAGANGGTNTACAATCCTGTGTTTTTGGCGTACTCTCGCTCANTGCTGTTTTGCCTTTTTTGCTTGCGACAGCAGGTTAAGCCTCAATACATACAAACGTACAACAAAGCTCACCCGAGACCCCGAGTTCGCTTCCGACATGCCGGAAACGTTGTTGCCCATTAACACACCCTCAATCCCACTTGATATCAAGGCGGGGGTGGACAGGGGGGGCTTCGGCACGGCGCGCGCGCGCGCTCTGTATGGTTGTGTAAAACAGGCGGACATTTATGAAAATCTGAAAACAACTTCCGGAACTAAAACAACAAGACTATTTGTCATTTATGTANAACATAATGTGCTATTCNCACTTCGTCACACTCTAATATATGTACACTGTACAATTTTCCACACTCCCAACTCACTCACTCTGAAATACACACCATACACACAATACGCGTGAGCACACACTGGACACACA]

[+] EMBL AL929774             [ATCGCAGANGGTNTACAATCCTGTGTTTTTGGCGTACTCTCGCTCANTGCTGTTTTGCCTTTTTTGCTTGCGACAGCAGGTTAAGCCTCAATACATACAAACGTACAACAAAGCTCACCCGAGACCCCGAGTTCGCTTCCGACATGCCGGAAACGTTGTTGCCCATTAACACACCCTCAATCCCACTTGATATCAAGGCGGGGGTGGACAGGGGGGGCTTCGGCACGGCGCGCGCGCGCGCTCTGTATGGTTGTGTAAAACAGGCGGACATTTATGAAAATCTGAAAACAACTTCCGGAACTAAAACAACAAGACTATTTGTCATTTATGTANAACATAATGTGCTATTCNCACTTCGTCACACTCTAATATATGTACACTGTACAATTTTCCACACTCCCAACTCACTCACTCTGAAATACACACCATACACACAATACGCGTGAGCACACACTGGACACACA]




>consensus_5907#0
ATCGCAGANGGTNTACAATCCTGTGTTTTTGGCGTACTCTCGCTCANTGCTGTTTTGCCT
TTTTTGCTTGCGACAGCAGGTTAAGCCTCAATACATACAAACGTACAACAAAGCTCACCC
GAGACCCCGAGTTCGCTTCCGACATGCCGGAAACGTTGTTGCCCATTAACACACCCTCAA
TCCCACTTGATATCAAGGCGGGGGTGGACAGGGGGGGCTTCGGCACGGCGCGCGCGCGCG
CTCTGTATGGTTGTGTAAAACAGGCGGACATTTATGAAAATCTGAAAACAACTTCCGGAA
CTAAAACAACAAGACTATTTGTCATTTATGTANAACATAATGTGCTATTCNCACTTCGTC
ACACTCTAATATATGTACACTGTACAATTTTCCACACTCCCAACTCACTCACTCTGAAAT
ACACACCATACACACAATACGCGTGAGCACACACTGGACACACA

consensusID : consensus_5907#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 356
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGAGAAAATCTACCGCCTGGGTGCCGGTATCCACACCAAGGATGGCAAGGTCATCAAGAACAGCGCTGCCACCGAGTACGATCTGACCGACAAGTCGATCACGCCGATGGGTGGTTTCCCGTTCTACGGAGAGATCAACCAGGATTTCCTCATGATCAAGGGTTGCTGCATCGGTGCCAAGCGTCGCGTAATCACGCTGCGCAAATCGCTGCTGTGCACACCAAGCGCTCTGGCCTCGAGCAGATCAAGCTCAAGTTCATCGACACCTCGTCGAAGATGGGCCATGGTCGCTTCCAGACGCCGGCTGACAAGCGCGCCTACTACGGCGTGC]

[+] EMBL BM644464             [CCGCCCACGCGTCCGCCCACGCGTCCGAGAAAATCTACCGCCTGGGTGCCGGTATCCACACCAAGGATGGCAAGGTCATCAAGAACAGCGCTGCCACCGAGTACGATCTGACCGACAAGTCGATCACGCCGATGGGTGGTTTCCCGTTCTACGGAGAGATCAACCAGGATTTCCTCATGATCAAGGGTTGCTGCATCGGTGCCAAGCGTCGCGTAATCACGCTGCGCAAATCGCTGCTGTGCACACCAAGCGCTCTGGCCTCGAGCAGATCAAGCTCAAGTTCATCGACACCTCGTCGAAGATGGGCCATGGTCGCTTCCAGACGCCGGCTGACAAGCGCGCCTACTACGGCGTGC]




>consensus_5907#1
CCGCCCACGCGTCCGCCCACGCGTCCGAGAAAATCTACCGCCTGGGTGCCGGTATCCACA
CCAAGGATGGCAAGGTCATCAAGAACAGCGCTGCCACCGAGTACGATCTGACCGACAAGT
CGATCACGCCGATGGGTGGTTTCCCGTTCTACGGAGAGATCAACCAGGATTTCCTCATGA
TCAAGGGTTGCTGCATCGGTGCCAAGCGTCGCGTAATCACGCTGCGCAAATCGCTGCTGT
GCACACCAAGCGCTCTGGCCTCGAGCAGATCAAGCTCAAGTTCATCGACACCTCGTCGAA
GATGGGCCATGGTCGCTTCCAGACGCCGGCTGACAAGCGCGCCTACTACGGCGTGC

consensusID : consensus_5907#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 349
fasta sequence

                              [ACTTAGAGAAGGAACGCTTATTCGGTACTGCTGCAACGTGCAAAGGTCTCATTTGCCGCTCTGACTCGCATCCAAGCAGCCGACGACCTGGGCCAACATGTCGTTAAACTCGCCCACCGCACCCTGTACCGCCACTTCCAGGTACTGCTCGGTGTCTTTTGCCAGTTCGGCCACTTCGCGGGATGTGTGGCCGATGAGTCCGGCCGCATCCTTCACGATGTCCTCCACAATGCTAACCGCGACGGGAGCTTTCTGCAGCGCACAGTTAATCTGATCGCCGATCCAGGAGTTTTCCTGCAGAAACTTCTGCCCAATCGCCACATTTTGCTTCACCTTTTCCGCACCATCT]

[+] EMBL CNS09ERY             [ACTTAGAGAAGGAACGCTTATTCGGTACTGCTGCAACGTGCAAAGGTCTCATTTGCCGCTCTGACTCGCATCCAAGCAGCCGACGACCTGGGCCAACATGTCGTTAAACTCGCCCACCGCACCCTGTACCGCCACTTCCAGGTACTGCTCGGTGTCTTTTGCCAGTTCGGCCACTTCGCGGGATGTGTGGCCGATGAGTCCGGCCGCATCCTTCACGATGTCCTCCACAATGCTAACCGCGACGGGAGCTTTCTGCAGCGCACAGTTAATCTGATCGCCGATCCAGGAGTTTTCCTGCAGAAACTTCTGCCCAATCGCCACATTTTGCTTCACCTTTTCCGCACCATCT]




>consensus_5907#2
ACTTAGAGAAGGAACGCTTATTCGGTACTGCTGCAACGTGCAAAGGTCTCATTTGCCGCT
CTGACTCGCATCCAAGCAGCCGACGACCTGGGCCAACATGTCGTTAAACTCGCCCACCGC
ACCCTGTACCGCCACTTCCAGGTACTGCTCGGTGTCTTTTGCCAGTTCGGCCACTTCGCG
GGATGTGTGGCCGATGAGTCCGGCCGCATCCTTCACGATGTCCTCCACAATGCTAACCGC
GACGGGAGCTTTCTGCAGCGCACAGTTAATCTGATCGCCGATCCAGGAGTTTTCCTGCAG
AAACTTCTGCCCAATCGCCACATTTTGCTTCACCTTTTCCGCACCATCT

consensusID : consensus_5907#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 163
fasta sequence

                              [GAATATCACCCTGCTTGAACGTGGCCTGATACTGCCAGTATTAACTGTCCGGCCGGTTCGTCTCGACGATGCCGCCGACCCGGTCCACCTTGCAGTGCAGTCGGCCGGCGGAAATGAAGCGCGACAACTCGGTATCGACGTTGCCACGCTCACGCCGAACGCG]

[+] EMBL CNS094T4             [GAATATCACCCTGCTTGAACGTGGCCTGATACTGCCAGTATTAACTGTCCGGCCGGTTCGTCTCGACGATGCCGCCGACCCGGTCCACCTTGCAGTGCAGTCGGCCGGCGGAAATGAAGCGCGACAACTCGGTATCGACGTTGCCACGCTCACGCCGAACGCG]




>consensus_5907#3
GAATATCACCCTGCTTGAACGTGGCCTGATACTGCCAGTATTAACTGTCCGGCCGGTTCG
TCTCGACGATGCCGCCGACCCGGTCCACCTTGCAGTGCAGTCGGCCGGCGGAAATGAAGC
GCGACAACTCGGTATCGACGTTGCCACGCTCACGCCGAACGCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5907#2      ------------------------------------------------------------
consensus_5907#3      ------------------------------------------------------------
consensus_5907#1      ---------------------------------------------------------CCG 3
consensus_5907#0      ATCGCAGANGGTNTACAATCCTGTGTTTTTGGCGTACTCTCGCTCANTGCTGTTTTGCCT 60
                                                                                  

consensus_5907#2      ------------------ACTTAGAGAAGGAACGCTTATTCGGTACTGCTGCAACGTGCA 42
consensus_5907#3      ------------------------GAATATCACCCTGCTTGAACGTGGCCTGATACTGCC 36
consensus_5907#1      CCCACGCGTCCGCCCACGCGTCCGAGAAAATCTACCGCCTGGGTGCCGGTATCCACACCA 63
consensus_5907#0      TTTTTGCTTGCGACAGCAGGTTAAGCCTCAATACATACAAACGTACAACAAAGCTCACCC 120
                                                                                * 

consensus_5907#2      AAGGTCTCATTTGCCGCTCTGACTCGCAT----CCAAGCAGCCGACGACCTGGGCCAACA 98
consensus_5907#3      A--GTATTAACTGTCCGGCCGGTTCGTCT----CGACGATGCCGCCGACCCGGTCCACCT 90
consensus_5907#1      AGGATGGCAAG-GTCATCAAGAACAGCGC----TGCCACCGAGTACGATCTGACCGACAA 118
consensus_5907#0      GAGACCCCGAGTTCGCTTCCGACATGCCGGAAACGTTGTTGCCCATTAACACACCCTCAA 180
                                          *    *              *      * *    *     

consensus_5907#2      TGTCGTTAAACTCGCCCACCGCACCCTGTACCGCCA------CTTCCAGGTACTGCTCGG 152
consensus_5907#3      TGCAGTGCAGTCGGCCGGCGGAAA--TGAAGCGCGA------CAACTCGGTA----TCGA 138
consensus_5907#1      GTCGATCACGCCGATGGGTGGTTTCCCGTTCTACGGAGAGATCAACCAGGATTTCCTCAT 178
consensus_5907#0      TCCCACTTGATATCAAGGCGGGGG--TGGACAGGGGGGGCTTCGGCACGGCGCGCGCGCG 238
                                          *      *              *  *  **          

consensus_5907#2      TGTCTTTTGCCAGTTCGGCCACTTCGCGGGATGTGTGGCCGATGAGTCCGGCCGCATCCT 212
consensus_5907#3      CGT----TGCCA---CGCTCAC---GCCGAACGCG------------------------- 163
consensus_5907#1      GATCAAGGGTTGCTGCATCGGT---GCCAAGCGT-CGCGTAATCACGCTGCGCAAATCGC 234
consensus_5907#0      CGCTCTGTATGGTTGTGTAAAACA-GGCGGACATTTATGAAAATCTGAAAACAACTTCCG 297
                                               *                                  

consensus_5907#2      TCACGATGTCCTCCACAATGCTAACCGCGACGGGAGCTTTCTGCAGCGCACAGTTAATCT 272
consensus_5907#3      ------------------------------------------------------------
consensus_5907#1      TGCTGTGCACACCAAGCGCTCTGGCCTCGAGCAGATCAAGCTCAAGTTCATCGACACCTC 294
consensus_5907#0      GAACTAAAACAACAAGACTATTTGTCATTTATGTANAACATAATGTGCTATTCNCACTTC 357
                                                                                  

consensus_5907#2      GATCGCCGATCCAGGAGTTTTCCTGCAGAAACTTCTGCCCAATCGCCACATTTTGCTTCA 332
consensus_5907#3      ------------------------------------------------------------
consensus_5907#1      GTCGAAGATGGGCCATGGTCGCTTCCAGACGCCGGCTGACAAGCGCGCCTACTACGGCGT 354
consensus_5907#0      GTCACACTCTAATATATGTACACTGTACAATTTTCCACACTCCCAACTCACTCACTCTGA 417
                                                                                  

consensus_5907#2      CCTTTTCCGCACCATCT------------------------------ 349
consensus_5907#3      -----------------------------------------------
consensus_5907#1      GC--------------------------------------------- 356
consensus_5907#0      AATACACACCATACACACAATACGCGTGAGCACACACTGGACACACA 464