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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5910#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1081 fasta sequence
[CTCGACTATGGATTAGTTTCGTCTCGCTATACCGATTGGAAGCTGTACCGAAAGTCGCTTAATCCTGCTTTTAACCAACGCATCCTTATCAGTTTCATATCGATCTTCAATCGATGCTCGGAAGTAATGGTAGCACGCATGGCAAAGGAGGCAGATCGTAGACAACCGTTCGATGCGCTTCATTACACCGCTCAGTGCACATTCGAGATGGTGTGTGCTAGCTCCTTGAAAAGCGACATAACACACGATCCTCAAGCGCGCGAGGCTTGCGGAGCCATCGAGAAGATGTGCGCCATTATGAGTAGCCGTCTGTTTAATGTGCTGCTTTACAGTGACCTGCTGTTTACGTTGACGCAAAGGTACCGCGAGATGCAGAAGGTGAGGGCTACGTTGGGACGAGTGGTAAATCCGATTTTGTACGACAGACGAGAAAAAATATCCAAACAGCGATTGGAAAACGCACACTCAGAGGACGAGGAGCATTACCGGAAACCGATGGTTTTTCTTGATCAGTTGCTGCACACGCAGCGAGGTGGTCGAGACTTGGAAATCCAGGAGATTGAAAACCATCTTAACACAATTATTGGAGCGGGCAGTGAAACAACTGCCAACCAGGTCGCTTTCATTCTGCTAATGCTTGCAATGCATCCCGAGGTGCAGGAACGGGTCTACGAAGAAATCGTCTCCATCTACGGCAGTGNCGCCTCGGACCTTTCGTACGAAACCATTTCGGCTCAAACGTATCTCGAGCAGGTGATCAAAGAAACGATGCGAGTGTATCCTGTGGCTCCACTCATCGGACGGGAAACGATCGAGACGGTGAAGCTGGGTGATGTGATCGTCCCATCCGGGGTAACGCTGCTCATCAACATCCTTACCTTGCATCGCAACAAGGAGCTGTGGGGTGAGCGGGCGCATGTTTTCGATCCGGATCGATTCGATCCTGCACAGTACGATGCCAAGAAGCAACATCCCTTCAGCTACATTCCATTCGGTGGAGGGCCCCGAAACTGCATCGGCTATCGGTACGGGATGTTTGCCATGAAAATCATGGTAACGCAGGTACTTCGCAAATATCAAC]
[+] EMBL BX624166 [CTCGACTATGGATTAGTTTCGTCTCGCTATACCGATTGGAAGCTGTACCGAAAGTCGCTTAATCCTGCTTTTAACCAACGCATCCTTATCAGTTTCATATCGATCTTCAATCGATGCTCGGAAGTAATGGTAGCACGCATGGCAAAGGAGGCAGATCGTAGACAACCGTTCGATGCGCTTCATTACACCGCTCAGTGCACATTCGAGATGGTGTGTGCTAGCTCCTTGAAAAGCGACATAACACACGATCCTCAAGCGCGCGAGGCTTGCGGAGCCATCGAGAAGATGTGCGCCATTATGAGTAGCCGTCTGTTTAATGTGCTGCTTTACAGTGACCTGCTGTTTACGTTGACGCAAAGGTACCGCGAGATGCAGAAGGTGAGGGCTACGTTGGGACGAGTGGTAAATCCGATTTTGTACGACAGACGAGAAAAAATATCCAAACAGCGATTGGAAAACGCACACTCAGAGGACGAGGAGCATTACCGGAAACCGATGGTTTTTCTTGATCAGTTGCTGCACACGCAGCGAGGTGGTCGAGACTTGGAAATCCAGGAGATTGAAAACCATCTTAACACAATTATTGGAGCGGGCAGTGAAACAACTGCCAACCAGGTCGCTTTCATTCTGCTAATGCTTGCAATGCATCCCGAGGTGCAGGAACGGGTCTACGAAGAAATCGTCTCCATCTACGGCAGTGNCGCCTCGGACC ]
[+] EMBL BX620595 [ CGACAGACGAGAAAAAATATCCAAACAGCGATTGGAAAACGCACACTCAGAGGACGAGGAGCATTACCGGAAACCGATGGTTTTTCTTGATCAGTTGCTGCACACGCAGCGAGGTGGTCGAGACTTGGAAATCCAGGAGATTGAAAACCATCTTAACACAATTATTGGAGCGGGCAGTGAAACAACTGCCAACCAGGTCGCTTTCATTCTGCTAATGCTTGCAATGCATCCCGAGGTGCAGGAACGGGTCTACGAAGAAATCGTCTCCATCTACGGCAGTGCCGCCTCGGACCTTTCGTACGAAACCATTTCGGCTCAAACGTATCTCGAGCAGGTGATCAAAGAAACGATGCGAGTGTATCCTGTGGCTCCACTCATCGGACGGGAAACGATCGAGACGGTGAAGCTGGGTGATGTGATCGTCCCATCCGGGGTAACGCTGCTCATCAACATCCTTACCTTGCATCGCAACAAGGAGCTGTGGGGTGAGCGGGCGCATGTTTTCGATCCGGATCGATTCGATCCTGCACAGTACGATGCCAAGAAGCAACATCCCTTCAGCTACATTCCATTCGGTGGAGGGCCCCGAAACTGCATCGGCTATCGGTACGGGATGTTTGCCATGAAAATCATGGTAACGCAGGTACTTCGCAAATATCAAC]
consensusID : consensus_5910#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 779 fasta sequence
[AGCGAAAATGTTCTTCATACCTGCACTCATCCTGCTACTTGGGCTTGTACTCTATTGGAGCAAGCTCTCCCGCAAAACCAGTGCCCAGTTGTTTGGCAAAGATATTCCCGGTCCCCGGTCTTATCCGCTCATCGGTTCGGCCCATCTATTCTTGGGCTCAGACGAGCGAACCTTCAGTGTGATAAATGAGCTGTTCCGCAAATACGGTAGCTTTTTCAAACTATCGCTCGGCCCCAAGACGTTCTTGTGTCTGTCCGATCCGGATCTTATTCAGCAAGCGCTCACATCGAGCGCCTGTCAGGATAAAGCGTTTTTCTACCGTTTTATGGAGCTCGACTATGGATTGATTTCGTCTCGCTATACCGATTGGAAGCTGTACCGAAAGTCGCTTAATCCTGCCTTTAACCAACGCATCCTTATCAGTTTCATATCGATCTTCAATCGATGCTCGGAAGTAATGGTAGCACGCATGGCAAAGGAGGCAGATCGTAGACAACCGTTCGATGTACTTCATTACACCGCTCAGTGCGCGCTGGAGATGGTATTCGCTAGCTCCCTTAAGAGCGACATTACGGACGATGCGCAGCTGCACGAGGCTTGCGAAGCTATCCAAAATATGTGCACCATCATGAGTAGCCGTATGTTTAATGTGCTGCTTTACAGTGACCTGCTGTTTACGTTAACGCATAAGTACCATGAGCTACAGAAGATGAAGGTAAAAGTGGNACGAGTGGTAAATCCGATTTTGTACCGGAAGAAGAGAGAAACTTTCCAAGCAA]
[+] EMBL BX624043 [AGCGAAAATGTTCTTCATACCTGCACTCATCCTGCTACTTGGGCTTGTACTCTATTGGAGCAAGCTCTCCCGCAAAACCAGTGCCCAGTTGTTTGGCAAAGATATTCCCGGTCCCCGGTCTTATCCGCTCATCGGTTCGGCCCATCTATTCTTGGGCTCAGACGAGCGAACCTTCAGTGTGATAAATGAGCTGTTCCGCAAATACGGTAGCTTTTTCAAACTATCGCTCGGCCCCAAGACGTTCTTGTGTCTGTCCGATCCGGATCTTATTCAGCAAGCGCTCACATCGAGCGCCTGTCAGGATAAAGCGTTTTTCTACCGTTTTATGGAGCTCGACTATGGATTGATTTCGTCTCGCTATACCGATTGGAAGCTGTACCGAAAGTCGCTTAATCCTGCCTTTAACCAACGCATCCTTATCAGTTTCATATCGATCTTCAATCGATGCTCGGAAGTAATGGTAGCACGCATGGCAAAGGAGGCAGATCGTAGACAACCGTTCGATGTACTTCATTACACCGCTCAGTGCGCGCTGGAGATGGTATTCGCTAGCTCCCTTAAGAGCGACATTACGGACGATGCGCAGCTGCACGAGGCTTGCGAAGCTATCCAAAATATGTGCACCATCATGAGTAGCCGTATGTTTAATGTGCTGCTTTACAGTGACCTGCTGTTTACGTTAACGCATAAGTACCATGAGCTACAGAAGATGAAGGTAAAAGTGGNACGAGTGGTAAATCCGATTTTGTACCGGAAGAAGAGAGAAACTTTCCAAGCAA]
[+] EMBL BX628727 [ TTGGAGCAAGCTCTCCCGCAAAACCAGTGCCCAGTTGTTTGGCAAAGATATTCCCGGTCCCCGGTCTTATCCGCTCATCGGTTCGGCCCATCTATTCTTGGGCTCAGACGAGCGAACCTTCAGTGTGATAAATGAGCTGTTCCGCAAATACGGTAGCTTTTTCAAACTATCGCTCGGCCCCAAGACGTTCTTGTGTCTGTCCGATCCGGATCTTATTCAGCAAGCGCTCACATCGAGCGCCTGTCAGGATAAAGCGTTTTTCTACCGTTTTATGGAGCTCGACTATGGATTGATTTCGTCTCGCTATACCGATTGGAAGCTGTACCGAAAGTCGCTTAATCCTGCCTTTAACCAACGCATCCTTATCAGTTTCATATCGATCTTCAATCGATGCTCGGAAGTAATGGTAGCACGCATGGCAAAGGAGGCAGATCGTAGACAACCGTTCGATGTACTTCATTACACCGCTCAGTGCGCGCTGGAGATGGTATTCGCTAGCTCCCTTAAGAGCGACATTACGGACGATGCGCAGCTGCACGAGGCTTGCGAAGCTATCCAAAATATGTGCACCATCATGAGTAGCCGTATGTTTAATGTGCTGCTTTACAGTGACCTGCTGTTTACGTTAACGCATAAGTACCATGAGCTACAGAAGATGAAGGTAAAAGTGGAACGAGTGGTAAATCCGATTTTGTACg ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5910#0 ------------------------------------------------------------
consensus_5910#1 AGCGAAAATGTTCTTCATACCTGCACTCATCCTGCTACTTGGGCTTGTACTCTATTGGAG 60
consensus_5910#0 ------------------------------------------------------------
consensus_5910#1 CAAGCTCTCCCGCAAAACCAGTGCCCAGTTGTTTGGCAAAGATATTCCCGGTCCCCGGTC 120
consensus_5910#0 ------------------------------------------------------------
consensus_5910#1 TTATCCGCTCATCGGTTCGGCCCATCTATTCTTGGGCTCAGACGAGCGAACCTTCAGTGT 180
consensus_5910#0 ------------------------------------------------------------
consensus_5910#1 GATAAATGAGCTGTTCCGCAAATACGGTAGCTTTTTCAAACTATCGCTCGGCCCCAAGAC 240
consensus_5910#0 ------------------------------------------------------------
consensus_5910#1 GTTCTTGTGTCTGTCCGATCCGGATCTTATTCAGCAAGCGCTCACATCGAGCGCCTGTCA 300
consensus_5910#0 -------------------------------CTCGACTATGGATTAGTTTCGTCTCGCTA 29
consensus_5910#1 GGATAAAGCGTTTTTCTACCGTTTTATGGAGCTCGACTATGGATTGATTTCGTCTCGCTA 360
************** *************
consensus_5910#0 TACCGATTGGAAGCTGTACCGAAAGTCGCTTAATCCTGCTTTTAACCAACGCATCCTTAT 89
consensus_5910#1 TACCGATTGGAAGCTGTACCGAAAGTCGCTTAATCCTGCCTTTAACCAACGCATCCTTAT 420
*************************************** ********************
consensus_5910#0 CAGTTTCATATCGATCTTCAATCGATGCTCGGAAGTAATGGTAGCACGCATGGCAAAGGA 149
consensus_5910#1 CAGTTTCATATCGATCTTCAATCGATGCTCGGAAGTAATGGTAGCACGCATGGCAAAGGA 480
************************************************************
consensus_5910#0 GGCAGATCGTAGACAACCGTTCGATGCGCTTCATTACACCGCTCAGTGCACATTCGAGAT 209
consensus_5910#1 GGCAGATCGTAGACAACCGTTCGATGTACTTCATTACACCGCTCAGTGCGCGCTGGAGAT 540
************************** ********************* * * *****
consensus_5910#0 GGTGTGTGCTAGCTCCTTGAAAAGCGACATAACACACGATCCTCAAGCGCGCGAGGCTTG 269
consensus_5910#1 GGTATTCGCTAGCTCCCTTAAGAGCGACATTACGGACGATGCGCAGCTGCACGAGGCTTG 600
*** * ********* * ** ******** ** ***** * ** ** *********
consensus_5910#0 CGGAGCCATCGAGAAGATGTGCGCCATTATGAGTAGCCGTCTGTTTAATGTGCTGCTTTA 329
consensus_5910#1 CGAAGCTATCCAAAATATGTGCACCATCATGAGTAGCCGTATGTTTAATGTGCTGCTTTA 660
** *** *** * ** ****** **** ************ *******************
consensus_5910#0 CAGTGACCTGCTGTTTACGTTGACGCAAAGGTACCGCGAGATGCAGAAGGTGAGGGCTAC 389
consensus_5910#1 CAGTGACCTGCTGTTTACGTTAACGCATAAGTACCATGAGCTACAGAAGATGAAGGTAAA 720
********************* ***** * ***** *** * ****** *** ** *
consensus_5910#0 GTTGGGACGAGTGGTAAATCCGATTTTGTAC-GACAGACGAGAAAAAATATCCAAACAGC 448
consensus_5910#1 AGTGGNACGAGTGGTAAATCCGATTTTGTACCGGAAGAAGAGAGAAACTTTCCAAGCAA- 779
*** ************************* * *** **** *** * ***** **
consensus_5910#0 GATTGGAAAACGCACACTCAGAGGACGAGGAGCATTACCGGAAACCGATGGTTTTTCTTG 508
consensus_5910#1 ------------------------------------------------------------
consensus_5910#0 ATCAGTTGCTGCACACGCAGCGAGGTGGTCGAGACTTGGAAATCCAGGAGATTGAAAACC 568
consensus_5910#1 ------------------------------------------------------------
consensus_5910#0 ATCTTAACACAATTATTGGAGCGGGCAGTGAAACAACTGCCAACCAGGTCGCTTTCATTC 628
consensus_5910#1 ------------------------------------------------------------
consensus_5910#0 TGCTAATGCTTGCAATGCATCCCGAGGTGCAGGAACGGGTCTACGAAGAAATCGTCTCCA 688
consensus_5910#1 ------------------------------------------------------------
consensus_5910#0 TCTACGGCAGTGNCGCCTCGGACCTTTCGTACGAAACCATTTCGGCTCAAACGTATCTCG 748
consensus_5910#1 ------------------------------------------------------------
consensus_5910#0 AGCAGGTGATCAAAGAAACGATGCGAGTGTATCCTGTGGCTCCACTCATCGGACGGGAAA 808
consensus_5910#1 ------------------------------------------------------------
consensus_5910#0 CGATCGAGACGGTGAAGCTGGGTGATGTGATCGTCCCATCCGGGGTAACGCTGCTCATCA 868
consensus_5910#1 ------------------------------------------------------------
consensus_5910#0 ACATCCTTACCTTGCATCGCAACAAGGAGCTGTGGGGTGAGCGGGCGCATGTTTTCGATC 928
consensus_5910#1 ------------------------------------------------------------
consensus_5910#0 CGGATCGATTCGATCCTGCACAGTACGATGCCAAGAAGCAACATCCCTTCAGCTACATTC 988
consensus_5910#1 ------------------------------------------------------------
consensus_5910#0 CATTCGGTGGAGGGCCCCGAAACTGCATCGGCTATCGGTACGGGATGTTTGCCATGAAAA 1048
consensus_5910#1 ------------------------------------------------------------
consensus_5910#0 TCATGGTAACGCAGGTACTTCGCAAATATCAAC 1081
consensus_5910#1 ---------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||