cluster # 5914

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Anopheles gambiae
cluster # 5914 cluster # 5914 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5914#0 length = 743 sequences # 2

consensus_5914#1 length = 644 sequences # 1
consensus_5914#2 length = 593 sequences # 1

consensusID : consensus_5914#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 743
fasta sequence

                              [GATCGCCCGAGGTTGTCACCGCCGATTGGAGCAGCAGCAGCAGCAGCGGCAGAGAAGCAAGCGCGCACCTTTATCCGCAACATCTGTTGTGTTGCGCATTTCGCGTGTGTGTGTGCAAGTAGGTGGCAGTTTTTGCAAGCTCGTGGCTGGTCTGGTATCCGTTCCCAGGATACAGCACACACGGCGCTGATCCTCTCGAGCTGAGCAGAGCAGAGCAGTAGGCTGTGAAGGAAATTCGCCTTTCCTTCCGTTGTCCCAAACGCTTGCCTGGAAGTTTGATAGAAAACGACGTGTACCACCAAGGGCGTAAAATATACTAAAACCGAAGAAAGATGGCCCCAAACGCAACGGTGGAGGCAACCGGTGTGCTGAACGAGCTGGACGCCGAAACGATCGACGGCGGACTGGCGAAGGATGTGACGCCGCTGAAGCGTGCCGAGAAGCGCAAGATCAAGCTGGTCTGGAGAAATGTGATTGCCTTCGGTTACCTTCATCTGGCCGCCGTGTACGGCGCCTTTCTAATGCTGACATCCGCCCGGCTCTACACCATCGCGTTCGGTAAGTTGTGGTTGTCAATTAATTGTCCGTATAATCGCACGTGTTATACAAACGTGCGTTTCGTGCGCTATTGCTGTGGCGTCCATACAATCACACCTTTCCTTTGTTTTTTTTTTTAATCTTCGCTTCCTGCAGCATTCGTGTTGTACGTCGTGTCCGGACTGGGCATTACGGCTGGCGCGCAT]

[+] EMBL AL930055             [GATCGCCCGAGGTTGTCACCGCCGATTGGAGCAGCAGCAGCAGCAGCGGCAGAGAAGCAAGCGCGCACCTTTATCCGCAACATCTGTTGTGTTGCGCATTTCGCGTGTGTGTGTGCAAGTAGGTGGCAGTTTTTGCAAGCTCGTGGCTGGTCTGGTATCCGTTCCCAGGATACAGCACACACGGCGCTGATCCTCTCGAGCTGAGCAGAGCAGAGCAGTAGGCTGTGAAGGAAATTCGCCTTTCCTTCCGTTGTCCCAAACGCTTGCCTGGAAGTTTGATAGAAAACGACGTGTACCACCAAGGGCGTAAAATATACTAAAACCGAAGAAAGATGGCCCCAAACGCAACGGTGGAGGCAACCGGTGTGCTGAACGAGCTGGACGCCGAAACGATCGACGGCGGACTGGCGAAGGATGTGACGCCGCTGAAGCGTGCCGAGAAGCGCAAGATCAAGCTGGTCTGGAGAAATGTGATTGCCTTCGGTTACCTTCATCTGGCCGCCGTGTACGGCG                                                                                                                                                                                                                                      ]
[+] EMBL BX606558             [                                                                                                                                                                                                                                                                                                                                                                                                                   ACTGGCGAAGGATGTGACGCCGCTGAAGCGTGCCGAGAAGCGCAAGATCAAGCTGGTCTGGAGAAATGTGATTGCCTTCGGTTACCTTCATCTGGCCGCCGTGTACGGCGCCTTTCTAATGCTGACATCCGCCCGGCTCTACACCATCGCGTTCGGTAAGTTGTGGTTGTCAATTAATTGTCCGTATAATCGCACGTGTTATACAAACGTGCGTTTCGTGCGCTATTGCTGTGGCGTCCATACAATCACACCTTTCCTTTGTTTTTTTTTTTAATCTTCGCTTCCTGCAGCATTCGTGTTGTACGTCGTGTCCGGACTGGGCATTACGGCTGGCGCGCAT]




>consensus_5914#0
GATCGCCCGAGGTTGTCACCGCCGATTGGAGCAGCAGCAGCAGCAGCGGCAGAGAAGCAA
GCGCGCACCTTTATCCGCAACATCTGTTGTGTTGCGCATTTCGCGTGTGTGTGTGCAAGT
AGGTGGCAGTTTTTGCAAGCTCGTGGCTGGTCTGGTATCCGTTCCCAGGATACAGCACAC
ACGGCGCTGATCCTCTCGAGCTGAGCAGAGCAGAGCAGTAGGCTGTGAAGGAAATTCGCC
TTTCCTTCCGTTGTCCCAAACGCTTGCCTGGAAGTTTGATAGAAAACGACGTGTACCACC
AAGGGCGTAAAATATACTAAAACCGAAGAAAGATGGCCCCAAACGCAACGGTGGAGGCAA
CCGGTGTGCTGAACGAGCTGGACGCCGAAACGATCGACGGCGGACTGGCGAAGGATGTGA
CGCCGCTGAAGCGTGCCGAGAAGCGCAAGATCAAGCTGGTCTGGAGAAATGTGATTGCCT
TCGGTTACCTTCATCTGGCCGCCGTGTACGGCGCCTTTCTAATGCTGACATCCGCCCGGC
TCTACACCATCGCGTTCGGTAAGTTGTGGTTGTCAATTAATTGTCCGTATAATCGCACGT
GTTATACAAACGTGCGTTTCGTGCGCTATTGCTGTGGCGTCCATACAATCACACCTTTCC
TTTGTTTTTTTTTTTAATCTTCGCTTCCTGCAGCATTCGTGTTGTACGTCGTGTCCGGAC
TGGGCATTACGGCTGGCGCGCAT

consensusID : consensus_5914#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 644
fasta sequence

                              [TTGACAACCAAAATTGGTTCCCGTTCGGTGTCTCTTGTGTACAAATCTTTGGGCCAATATCCCCGTCTTTTCCTCGTTATCTGTGTTTAGTTTTCTTTTCTTTCTACACTTTGCTGTTGTTAGCTAGTGGATAAGCGTTTTATTTCGATTGTTGTTGCATTAAATGTACGCTCGATTTTTGTGTCTACTGTAGGCGGTGGTACGATAACTTTGGATAAAAAAAAAACAAACAAACATAACAAAGCTATCTACAGTGAAAAATAGAAGCGACGTAAGAGATAACACACACAACACAATGCTCCGTATCTTCCGCAATGCCATCCTGGACAAACGCATCACCCGCAAGACGTTCTCCTTCTCAGCCATTGCGGCTAAGCGCTACGTCATAAAGGATCACTACGAGTTCGACCAGAAGGTGATAAACAGCGACAACCCGGTGATCGTCAACTTCCACGCCGAATGGTGTGACCCGTGCAAAATACTTACCCCGAAGATGACGGAACTGCTGGAACCGTCGGAGGAGATCGATCTGGCGATCGTCGATGTGGATGACAATGCGGACTGGTGCAGACGTTCGAGGTGAAAAAAAAAAAAAAAACCTTGCCATCCGGAACGTGTGGTGGTGGACACATTCCTCGGCCTGG]

[+] EMBL CNS08ZXK             [TTGACAACCAAAATTGGTTCCCGTTCGGTGTCTCTTGTGTACAAATCTTTGGGCCAATATCCCCGTCTTTTCCTCGTTATCTGTGTTTAGTTTTCTTTTCTTTCTACACTTTGCTGTTGTTAGCTAGTGGATAAGCGTTTTATTTCGATTGTTGTTGCATTAAATGTACGCTCGATTTTTGTGTCTACTGTAGGCGGTGGTACGATAACTTTGGATAAAAAAAAAACAAACAAACATAACAAAGCTATCTACAGTGAAAAATAGAAGCGACGTAAGAGATAACACACACAACACAATGCTCCGTATCTTCCGCAATGCCATCCTGGACAAACGCATCACCCGCAAGACGTTCTCCTTCTCAGCCATTGCGGCTAAGCGCTACGTCATAAAGGATCACTACGAGTTCGACCAGAAGGTGATAAACAGCGACAACCCGGTGATCGTCAACTTCCACGCCGAATGGTGTGACCCGTGCAAAATACTTACCCCGAAGATGACGGAACTGCTGGAACCGTCGGAGGAGATCGATCTGGCGATCGTCGATGTGGATGACAATGCGGACTGGTGCAGACGTTCGAGGTGAAAAAAAAAAAAAAAACCTTGCCATCCGGAACGTGTGGTGGTGGACACATTCCTCGGCCTGG]




>consensus_5914#1
TTGACAACCAAAATTGGTTCCCGTTCGGTGTCTCTTGTGTACAAATCTTTGGGCCAATAT
CCCCGTCTTTTCCTCGTTATCTGTGTTTAGTTTTCTTTTCTTTCTACACTTTGCTGTTGT
TAGCTAGTGGATAAGCGTTTTATTTCGATTGTTGTTGCATTAAATGTACGCTCGATTTTT
GTGTCTACTGTAGGCGGTGGTACGATAACTTTGGATAAAAAAAAAACAAACAAACATAAC
AAAGCTATCTACAGTGAAAAATAGAAGCGACGTAAGAGATAACACACACAACACAATGCT
CCGTATCTTCCGCAATGCCATCCTGGACAAACGCATCACCCGCAAGACGTTCTCCTTCTC
AGCCATTGCGGCTAAGCGCTACGTCATAAAGGATCACTACGAGTTCGACCAGAAGGTGAT
AAACAGCGACAACCCGGTGATCGTCAACTTCCACGCCGAATGGTGTGACCCGTGCAAAAT
ACTTACCCCGAAGATGACGGAACTGCTGGAACCGTCGGAGGAGATCGATCTGGCGATCGT
CGATGTGGATGACAATGCGGACTGGTGCAGACGTTCGAGGTGAAAAAAAAAAAAAAAACC
TTGCCATCCGGAACGTGTGGTGGTGGACACATTCCTCGGCCTGG

consensusID : consensus_5914#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 593
fasta sequence

                              [CCGCCCACGCGTCCGCCCACGCGTCCGGTCAACCGCGGATTGGAGCAGCAGCAGCAGCAGCGGCAGAGAAGCAAGCGCGCACCTTTATCCGCAACATCTGTTGTGTTGCGCATTTCGCGTGTGTGTGTGCAAGTAGGTGGCAGTTTTTGCAAGTTCGTGGCTGGTCTGGTATCCGTTCCCAGGATACAGCACACACGGCGCTGATCCTCTCGAGCTGAGCAGAGCAGTAGGCTGTGAAGGAAATTCGCTTTTCCTTCCGGTGTCCCAAACGCTTGCCTGGAAGGTTGATAGAAAACGACGTGTACCACCATCACCGAGGGCGTAAAATATACTAAAACCGAAGAAAGATGGCCCCTAACGCAACGGTGGAGGCAACCGGTGTGCTGAACGAGCTGGACGCCGAAACGATCGACGGCGGACTGGCGAAGGATGTGACGCCGCTGAAGCGTGCCGAGAAGCGCAAGATCAAGCTGGTCTGGAGAAATGTGATTGCCTTCGGTTACCTTCATCTGGCCGCCGTGTACGGCGCCTTTCTAATGCTGACATCCGCCCGGCTCTACACCATCGCGTTCGCATTCGTGTTGTACGTCGTG]

[+] EMBL BM586670             [CCGCCCACGCGTCCGCCCACGCGTCCGGTCAACCGCGGATTGGAGCAGCAGCAGCAGCAGCGGCAGAGAAGCAAGCGCGCACCTTTATCCGCAACATCTGTTGTGTTGCGCATTTCGCGTGTGTGTGTGCAAGTAGGTGGCAGTTTTTGCAAGTTCGTGGCTGGTCTGGTATCCGTTCCCAGGATACAGCACACACGGCGCTGATCCTCTCGAGCTGAGCAGAGCAGTAGGCTGTGAAGGAAATTCGCTTTTCCTTCCGGTGTCCCAAACGCTTGCCTGGAAGGTTGATAGAAAACGACGTGTACCACCATCACCGAGGGCGTAAAATATACTAAAACCGAAGAAAGATGGCCCCTAACGCAACGGTGGAGGCAACCGGTGTGCTGAACGAGCTGGACGCCGAAACGATCGACGGCGGACTGGCGAAGGATGTGACGCCGCTGAAGCGTGCCGAGAAGCGCAAGATCAAGCTGGTCTGGAGAAATGTGATTGCCTTCGGTTACCTTCATCTGGCCGCCGTGTACGGCGCCTTTCTAATGCTGACATCCGCCCGGCTCTACACCATCGCGTTCGCATTCGTGTTGTACGTCGTG]




>consensus_5914#2
CCGCCCACGCGTCCGCCCACGCGTCCGGTCAACCGCGGATTGGAGCAGCAGCAGCAGCAG
CGGCAGAGAAGCAAGCGCGCACCTTTATCCGCAACATCTGTTGTGTTGCGCATTTCGCGT
GTGTGTGTGCAAGTAGGTGGCAGTTTTTGCAAGTTCGTGGCTGGTCTGGTATCCGTTCCC
AGGATACAGCACACACGGCGCTGATCCTCTCGAGCTGAGCAGAGCAGTAGGCTGTGAAGG
AAATTCGCTTTTCCTTCCGGTGTCCCAAACGCTTGCCTGGAAGGTTGATAGAAAACGACG
TGTACCACCATCACCGAGGGCGTAAAATATACTAAAACCGAAGAAAGATGGCCCCTAACG
CAACGGTGGAGGCAACCGGTGTGCTGAACGAGCTGGACGCCGAAACGATCGACGGCGGAC
TGGCGAAGGATGTGACGCCGCTGAAGCGTGCCGAGAAGCGCAAGATCAAGCTGGTCTGGA
GAAATGTGATTGCCTTCGGTTACCTTCATCTGGCCGCCGTGTACGGCGCCTTTCTAATGC
TGACATCCGCCCGGCTCTACACCATCGCGTTCGCATTCGTGTTGTACGTCGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5914#0      ----------GATCGCCCGAGGTT---GTCA-CCGCCGATTGGAGCAGCAGCAGCAGCAG 46
consensus_5914#2      CCGCCCACGCGTCCGCCCACGCGTCCGGTCAACCGCGGATTGGAGCAGCAGCAGCAGCAG 60
consensus_5914#1      --------TTGACAACCAAAATTGGTTCCCGTTCGGTGTCTCTTGTGTACAAATCTTTGG 52
                                *    **            *   **  *  *   *       * *    *

consensus_5914#0      CGGCAGAGAAGCAAGCGCGCACCTTTATCCGC----AACATCTGTTGTGTTGCGCATTTC 102
consensus_5914#2      CGGCAGAGAAGCAAGCGCGCACCTTTATCCGC----AACATCTGTTGTGTTGCGCATTTC 116
consensus_5914#1      GCCAATATCCCCGTCTTTTCCTCGTTATCTGTGTTTAGTTTTCTTTTCTTTCTACACTTT 112
                          * *    *       *  * ***** *     *   *   **   **   ** ** 

consensus_5914#0      GCGTGTGTGTGTGCAAGTAGGTGGCAGTTTTTGCAAGCTCGTGGCTG-GTCTGGTATCCG 161
consensus_5914#2      GCGTGTGTGTGTGCAAGTAGGTGGCAGTTTTTGCAAGTTCGTGGCTG-GTCTGGTATCCG 175
consensus_5914#1      GC-TGT-TGTTAGCTAGTGGATAAGCGTTTTATTTCGATTGTTGTTGCATTAAATGTACG 170
                      ** *** ***  ** *** * *    *****     * * ** * **  *    * * **

consensus_5914#0      TTCCCAGGATACAGC-ACACACGGCGCTGATCCTCTCGAGCTGAGCAGAGCAGAGCAGTA 220
consensus_5914#2      TTCCCAGGATACAGC-ACACACGGCGCTGATCCTCTCGAGCTGAGCAGAGCAG-----TA 229
consensus_5914#1      CTCGATTTTTGTGTCTACTGTAGGCGGTGGTACGATAACTTTGGATAAAAAAAA--AACA 228
                       **      *    * **    **** ** * *  *     **   * *  *       *

consensus_5914#0      GGCTGTGAAGGAAATTCGCCTTTCCTTCCGTTGTCCCAAACGCTTGCCTGGAAGTTTGAT 280
consensus_5914#2      GGCTGTGAAGGAAATTCGCTTTTCCTTCCGGTGTCCCAAACGCTTGCCTGGAAGGTTGAT 289
consensus_5914#1      AACAAACATAACAAAGCTATCTACAGTGAAAAATAG-AAGCGACGTAAGAGATAACACAC 287
                        *    *    **  *    * *  *      *   ** **        **      * 

consensus_5914#0      AGAAAACGACGTGTACCACCA------AGGGCGTAAAATATACTAAAACCGAA-GAAAGA 333
consensus_5914#2      AGAAAACGACGTGTACCACCATCACCGAGGGCGTAAAATATACTAAAACCGAA-GAAAGA 348
consensus_5914#1      ACAACACAATGCTCCGTATCTTCCGCAATGCCATCCTGGACAAACGCATCACCCGCAAGA 347
                      * ** ** * *      * *       * * * *     * *     * *    * ****

consensus_5914#0      TGGCCCCAAACGCAACGGTGGAGGC-AACCGGTGTGCTGAA-----------CGAGCTGG 381
consensus_5914#2      TGGCCCCTAACGCAACGGTGGAGGC-AACCGGTGTGCTGAA-----------CGAGCTGG 396
consensus_5914#1      CGTTCTCCTTCTCAGCCATTGCGGCTAAGCGCTACGTCATAAAGGATCACTACGAGTTCG 407
                       *  * *   * ** *  * * *** ** ** *  *    *           **** * *

consensus_5914#0      ACGCCGAAACGATCGACGGCGGACTGGCGAAGGATGT-GACGCCGCTGAAGCGTGCCGAG 440
consensus_5914#2      ACGCCGAAACGATCGACGGCGGACTGGCGAAGGATGT-GACGCCGCTGAAGCGTGCCGAG 455
consensus_5914#1      ACCAGAAGGTGATAAACAGCGACAACCCGGTGATCGTCAACTTCCACGCCGAATGGTGTG 467
                      **    *   ***  ** ***      **  *   **  **  *   *  *  **  * *

consensus_5914#0      AAGCGCAAGATCAAGCTGGTCTGGAGA-AATGTGATTGCC-------TTCGGTTACCTTC 492
consensus_5914#2      AAGCGCAAGATCAAGCTGGTCTGGAGA-AATGTGATTGCC-------TTCGGTTACCTTC 507
consensus_5914#1      ACCCGTGCAAAATACTTACCCCGAAGATGACGGAACTGCTGGAACCGTCGGAGGAGATCG 527
                      *  **    *   *  *   * * ***  * *  * ***        *  *   *  *  

consensus_5914#0      ATCTGGCCGCCGTGTACGGCGCCTTTCTAATGCTGACATCCGCCCG-GCTCTACACCATC 551
consensus_5914#2      ATCTGGCCGCCGTGTACGGCGCCTTTCTAATGCTGACATCCGCCCG-GCTCTACACCATC 566
consensus_5914#1      ATCTGGCGATCGTCGATGTGGA--TGACAATGCGGACTGGTGCAGACGTTCGAGGTGAAA 585
                      *******   ***  * *  *   *   ***** ***    **    * ** *    *  

consensus_5914#0      GCGTTCGGTAAGTTGTGGTTGTCAATTAATTGTCCGTATAATCGCACGTGTTATACAAAC 611
consensus_5914#2      GCGTTCGC--ATTCGTG-TTGTACGTCGTG------------------------------ 593
consensus_5914#1      AAAAAAAAAAAAACCTTGCCATCCGGAACGTGTGGTGGTGGACACATTCCTCGGCCTGG- 644
                                *    *     *                                      

consensus_5914#0      GTGCGTTTCGTGCGCTATTGCTGTGGCGTCCATACAATCACACCTTTCCTTTGTTTTTTT 671
consensus_5914#2      ------------------------------------------------------------
consensus_5914#1      ------------------------------------------------------------
                                                                                  

consensus_5914#0      TTTTAATCTTCGCTTCCTGCAGCATTCGTGTTGTACGTCGTGTCCGGACTGGGCATTACG 731
consensus_5914#2      ------------------------------------------------------------
consensus_5914#1      ------------------------------------------------------------
                                                                                  

consensus_5914#0      GCTGGCGCGCAT 743
consensus_5914#2      ------------
consensus_5914#1      ------------