These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5917#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1535 fasta sequence [TTCTGTGCACGCATCGGCGTGTTGTTGATTTTCGTGTCGTGTAAAGATCCCGGAGAAAATCCTGCAAGATGGTTAACTTTACCGTTGACGAAATCCGTGCCATGATGGACAAGAAGCGGAACATCCGCAACATGTCCGTCATCGCTCACGTCGATCACGGTAAGTCCACCCTGACCGACTCGCTGGTGTCGAAGGCCGGTATTATTGCCGGTGCTAAGGCTGGTGAAACCCGTTTCACCGACACCCGCAAGGACGAGCAGGAGCGTTGCATTACCATCAAGTCGACTGCCATCTCGATGTACTTCGAGCTGGACGAGAAGGATCTGGTGTTCATCACGAACCCGGACCAGCGCGACAAGGACTGCAAGGGCTTCTTGATCAACCTGATCGATTCGCCCGGGCACGTCGATTTCTCGTCGGAAGTGACGGCTGCAGCTCGACCCGGAGGATCTGTACCAGACCTTCCAGCGTATCGTGGAGAACGTGAACGTCATCATCGCCACGTACAACGACGACGGTGGCCCGATGGGTGAGGTGCGCATCGATCCGTCCCGCGGTTCGGTCGGCTTCGGCTCGGGCCTGCACGGCTGGGCGTTCACGCTCAAGCAGTTCGCCGAGATGTACTCGGCTATGTTCAAGATCGACGTGGTGAAGCTGATGAACCGAAAATGGGGCGAGAACTTCTTCAACTCGAAGACGAAGAAGTGGGCGAAGGTGAAGGACGATGACAACAAGCGCTCGTTCGTGTGCTGTACGCTTCGTACATTACGGCCTCGCCCCGCATCATGGAGCCCGTCTACCTGTGCGAGATCCAGTGTCCGGAAGCGGCCGTCGGTGGTATCTACGGTGTGCTGAACAGACGCCGTGGCCACGTGTTCGAGGACTCGCAGGTCGCCGGTACGCCCATGTTCGTCGTCAAGGCTTATCTGCCCGTCAACGAGTCGTTCGGTTTCACCGCCGATCTGAGATCCAACACCGGTGGACAGGCATTCCCACAGTGCGTGTTCGATCACTGGCAGATCTTCCCCGGTGACCCAACTGACCCCAGCACGAAGCCGTACCAGATCATCCAGGACATCCGCAAGCGTAAGGGTCTGAAGGAAGGCCTGCCAGATCTGTCGCAGTACTTGGACAAGCTGTAAACGCTTCGGCCGGAGCAGCAGCAGCAGCAACAACAACAAACCCATTTATTAATTTACCAAGTACATTTATAAAATCGAAGCTGTGTGTTGTGTGTGGGCTGCTGCAAAACCATCCGCAGCAGGACAGCCAACACAGCACAGGACTTATTTACACACAGAAAAGCAAATCAGACACTCAAAAGCAAGGCATGGCACGCGGGCGGTATGATGATTTGATTTTTTTTATTGGACAGAGAAGAGTTTCACACGCACACACCAACACACACACACAATACAGTGCTGCAAATTGGGACTGCACTGTGGGACCCACATCCGCAAGCGTAAGGATCTTCCCGGTGACCCAACTGACCCCAGCACGAAGCCGTACCAGATCATCCAGGACATCCGCAGGCT] [+] EMBL CNS08H41 [TTCTGTGCACGCATCGGCGTGTTGTTGATTTTCGTGTCGTGTAAAGATCCCGGAGAAAATCCTGCAAGATGGTTAACTTTACCGTTGACGAAATCCGTGCCATGATGGACAAGAAGCGGAACATCCGCAACATGTCCGTCATCGCTCACGTCGATCACGGTAAGTCCACCCTGACCGACTCGCTGGTGTCGAAGGCCGGTATTATTGCCGGTGCTAAGGCTGGTGAAACCCGTTTCACCGACACCCGCAAGGACGAGCAGGAGCGTTGCATTACCATCAAGTCGACTGCCATCTCGATGTACTTCGAGCTGGACGAGAAGGATCTGGTGTTCATCACGAACCCGGACCAGCGCGACAAGGACTGCAAGGGCTTCTTGATCAACCTGATCGATTCGCCCGGGCACGTCGATTTCTCGTCGGAAGTGACGGCTGCAGCTCGACCCGGAGGATCTGTACCAGACCTTCCAGCGTATCGTGGAGAACGTGAACGTCATCATCGCCACGTACAACGACGACGGTGGCCCGATGGGTGAGGTGCGCATCGATCCGTCCCGCGGTTCGGTCGGCTTCGGCTCGGGCCTGCACGGCTGGGCGTTCACGCTCAAGCAGTTCGCCGAGATGTACTCGGCTATGTTCAAGATCGACGTGGTGAAGCTGATGAACCGAAAATGGGGCGAGAACTTCTTCAACTCGAAGACGAAGAAGTGGGCGAAGGTGAAGGACGATGACAACAAGCGCTCGTTCGTGTGCTGTACGCTTCGTACATTACGGCCTCGCCCCGCATCATGGAGCCCGTCTACCTGTGCGAGATCCAGTGTCCGGAAGCGGCCGTCGGTGGTATCTACGGTGTGCTGAACAGACGCCGTGGCCACGTGTTCGAGGACTCGCAGGTCGCCGGTACGCCCATGTTCGTCGTCAAGGCTTATCTGCCCGTCAACGAGTCGTTCGGTTTCACCGCCGATCTGAGATCCAA ] [+] EMBL CNS08I50 [ TGATCGATTCGCCCGGGCACGTCGATTTCTCGTCGGAAGTGACGGCTGCAGCTCGACCCGGAGGATCTGTACCAGACCTTCCAGCGTATCGTGGAGAACGTGAACGTCATCATCGCCACGTACAACGACGACGGTGGCCCGATGGGTGAGGTGCGCATCGATCCGTCCCGCGGTTCGGTCGGTTTCGGCTCGGGCCTGCACGGCTGGGCGTTCACGCTCAAGCAGTTCGCCGAGATGTACTCGGCTATGTTCAAGATCGACGTGGTGAAGCTGATGAACCGCCTGTGGGGCGAGAACTTCTTCAACTCGAAGACGAAGAAGTGGGCGAAGGTGAAGGACGATGACAACAAGCGCTCGTTCGTGTGCTGTACGCTTCGTACATTACGGCCTCGCCCCGCATCATGGAGCCCGTCTACCTGTGCGAGATCCAGTGTCCGGAAGCGGCCGTCGGTGGTATCTACGGTGTGCTGAACAGACGCCGTGGCCACGTGTTCGAGGACTCGCAGGTCGCCGGTACGCCCATGTTCGTCGTCAAGGCTTATCTGCCCGTCAACGAGTCGTTCGGTTTCACCGCCGA ] [+] EMBL CNS09540 [ aagccgTCGTGTGCTGTACGCTTCGTACATTACGGCCTCGCCCCGCATCATGGAGCCCGTCTACCTGTGCGAGATCCAGTGTCCGGAAGCGGCCGTCGGTGGTATCTACGGTGTGCTGAACAGACGCCGTGGCCACGTGTTCGAGGACTCGCAGACCGCCGGTACGCCCATGTTCGTCGTCAAGGCTTATCTGCCCGTCAACGAGTCGTTCGGTTTCACCGCCGATCTGAGATCCAACACCGGTGGACAGGCATTCCCACAGTGCGTGTTCGATCACTGGCAGATCTTCCCCGGTGACCCAACTGACCCCAGCACGAAGCCGTACCAGATCATCCAGGACATCCGCAAGCGTAAGGGTCTGAAGGAAGGCCTGCCAGATCTGTCGCAGTACTTGGACAAGCTGTAAACGCTTCGGCCGGAGCAGCAGCAGCAGCAACAACAACAAACCCATTTATTAATTTACCAAGTACATTTATAAAATCGAAGCTGTGTGTTGTGTGTGGGCTGCTGCAAAACCATCCGCAGCAGGACAGCCAACACAGCACAGGACTTATTTACACACAGAAAAGCAAATCAGACACTCAAAAGCAAGGCATGGCACGCGGGCGGTATGATGATTTGATTTTTTTTATTGGACAGAGAAGAGTTTCACACGCACACACCAACACACACACACAATACAGTGCTGCAAATTGGGACTGCACTGTGGGACCCACATCCGCAAGCGTAAGGATCTTCCCGGTGACCCAACTGACCCCAGCACGAAGCCGTACCAGATCATCCAGGACATCCGCAGGCT] consensusID : consensus_5917#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 630 fasta sequence [CCGCCCACGCGTCCGCGCCCGTCGTGTGCTGTACGCTTCGTACATTACGGCCTCGCCCCGCATCATGGAGCCCGTCTACCTGTGCGAGATCCAGTGTCCGGAAGCGGCCGTCGGTGGTATCTACGGTGTGCTGAACAGACGCCGTGGCCACGTGTTCGAGGACTCGCAGGTCGCCGGTACGCCCATGTTCGTCGTCAAGGCTTATCTGCCCGTCAACGAGTCGTTCGGTTTCACCGCCGATCTGAGATCCAACACCGGTGGACAGGCATTCCCACAGTGCGTGTTCGATCACTGGCAGATCTTCCCCGGTGACCCAACTGACCCCAGCACGAAGCCGTACCAGATCATCCAGGACATCCGCAAGCGTAAGGGTCTGAAGGAAGGCCTGCCAGATCTGTCGCAGTACTTGGACAAGCTGTAAACGCTTCGGCCGGAGCAGCAGCAGCAGCAACAACAACAAACCCATTTATTAATTTACCAAGTACATTTATAAAATCGAAGCTGTGTGTTGTGTGTGGGCTGCTGCAAAACCATCCGCAGCAGGACAGCCAACACAGCACAGGACTTATTTACACACAGAAAAGCAAATCAGACACTCAAAAAGCAAGGCATGGCACGCGGGCGGTATGA] [+] EMBL BM621405 [CCGCCCACGCGTCCGCGCCCGTCGTGTGCTGTACGCTTCGTACATTACGGCCTCGCCCCGCATCATGGAGCCCGTCTACCTGTGCGAGATCCAGTGTCCGGAAGCGGCCGTCGGTGGTATCTACGGTGTGCTGAACAGACGCCGTGGCCACGTGTTCGAGGACTCGCAGGTCGCCGGTACGCCCATGTTCGTCGTCAAGGCTTATCTGCCCGTCAACGAGTCGTTCGGTTTCACCGCCGATCTGAGATCCAACACCGGTGGACAGGCATTCCCACAGTGCGTGTTCGATCACTGGCAGATCTTCCCCGGTGACCCAACTGACCCCAGCACGAAGCCGTACCAGATCATCCAGGACATCCGCAAGCGTAAGGGTCTGAAGGAAGGCCTGCCAGATCTGTCGCAGTACTTGGACAAGCTGTAAACGCTTCGGCCGGAGCAGCAGCAGCAGCAACAACAACAAACCCATTTATTAATTTACCAAGTACATTTATAAAATCGAAGCTGTGTGTTGTGTGTGGGCTGCTGCAAAACCATCCGCAGCAGGACAGCCAACACAGCACAGGACTTATTTACACACAGAAAAGCAAATCAGACACTCAAAAAGCAAGGCATGGCACGCGGGCGGTATGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5917#0 TTCTGTGCACGCATCGGCGTGTTGTTGATTTTCGTGTCGTGTAAAGATCCCGGAGAAAAT 60 consensus_5917#1 ------------------------------------------------------------ consensus_5917#0 CCTGCAAGATGGTTAACTTTACCGTTGACGAAATCCGTGCCATGATGGACAAGAAGCGGA 120 consensus_5917#1 ------------------------------------------------------------ consensus_5917#0 ACATCCGCAACATGTCCGTCATCGCTCACGTCGATCACGGTAAGTCCACCCTGACCGACT 180 consensus_5917#1 ------------------------------------------------------------ consensus_5917#0 CGCTGGTGTCGAAGGCCGGTATTATTGCCGGTGCTAAGGCTGGTGAAACCCGTTTCACCG 240 consensus_5917#1 ------------------------------------------------------------ consensus_5917#0 ACACCCGCAAGGACGAGCAGGAGCGTTGCATTACCATCAAGTCGACTGCCATCTCGATGT 300 consensus_5917#1 ------------------------------------------------------------ consensus_5917#0 ACTTCGAGCTGGACGAGAAGGATCTGGTGTTCATCACGAACCCGGACCAGCGCGACAAGG 360 consensus_5917#1 ------------------------------------------------------------ consensus_5917#0 ACTGCAAGGGCTTCTTGATCAACCTGATCGATTCGCCCGGGCACGTCGATTTCTCGTCGG 420 consensus_5917#1 ------------------------------------------------------------ consensus_5917#0 AAGTGACGGCTGCAGCTCGACCCGGAGGATCTGTACCAGACCTTCCAGCGTATCGTGGAG 480 consensus_5917#1 ------------------------------------------------------------ consensus_5917#0 AACGTGAACGTCATCATCGCCACGTACAACGACGACGGTGGCCCGATGGGTGAGGTGCGC 540 consensus_5917#1 ------------------------------------------------------------ consensus_5917#0 ATCGATCCGTCCCGCGGTTCGGTCGGCTTCGGCTCGGGCCTGCACGGCTGGGCGTTCACG 600 consensus_5917#1 ------------------------------------------------------------ consensus_5917#0 CTCAAGCAGTTCGCCGAGATGTACTCGGCTATGTTCAAGATCGACGTGGTGAAGCTGATG 660 consensus_5917#1 ------------------------------------------------------------ consensus_5917#0 AACCGAAAATGGGGCGAGAACTTCTTCAACTCGAAGACGAAGAAGTGGGCGAAGGTGAAG 720 consensus_5917#1 ------------------------------------------------------------ consensus_5917#0 GACGATGACA-ACAAGCGCTCGTTCGTGTGCTGTACGCTTCGTACATTACGGCCTCGCCC 779 consensus_5917#1 -CCGCCCACGCGTCCGCGCCCGT-CGTGTGCTGTACGCTTCGTACATTACGGCCTCGCCC 58 ** ** **** *** ************************************ consensus_5917#0 CGCATCATGGAGCCCGTCTACCTGTGCGAGATCCAGTGTCCGGAAGCGGCCGTCGGTGGT 839 consensus_5917#1 CGCATCATGGAGCCCGTCTACCTGTGCGAGATCCAGTGTCCGGAAGCGGCCGTCGGTGGT 118 ************************************************************ consensus_5917#0 ATCTACGGTGTGCTGAACAGACGCCGTGGCCACGTGTTCGAGGACTCGCAGGTCGCCGGT 899 consensus_5917#1 ATCTACGGTGTGCTGAACAGACGCCGTGGCCACGTGTTCGAGGACTCGCAGGTCGCCGGT 178 ************************************************************ consensus_5917#0 ACGCCCATGTTCGTCGTCAAGGCTTATCTGCCCGTCAACGAGTCGTTCGGTTTCACCGCC 959 consensus_5917#1 ACGCCCATGTTCGTCGTCAAGGCTTATCTGCCCGTCAACGAGTCGTTCGGTTTCACCGCC 238 ************************************************************ consensus_5917#0 GATCTGAGATCCAACACCGGTGGACAGGCATTCCCACAGTGCGTGTTCGATCACTGGCAG 1019 consensus_5917#1 GATCTGAGATCCAACACCGGTGGACAGGCATTCCCACAGTGCGTGTTCGATCACTGGCAG 298 ************************************************************ consensus_5917#0 ATCTTCCCCGGTGACCCAACTGACCCCAGCACGAAGCCGTACCAGATCATCCAGGACATC 1079 consensus_5917#1 ATCTTCCCCGGTGACCCAACTGACCCCAGCACGAAGCCGTACCAGATCATCCAGGACATC 358 ************************************************************ consensus_5917#0 CGCAAGCGTAAGGGTCTGAAGGAAGGCCTGCCAGATCTGTCGCAGTACTTGGACAAGCTG 1139 consensus_5917#1 CGCAAGCGTAAGGGTCTGAAGGAAGGCCTGCCAGATCTGTCGCAGTACTTGGACAAGCTG 418 ************************************************************ consensus_5917#0 TAAACGCTTCGGCCGGAGCAGCAGCAGCAGCAACAACAACAAACCCATTTATTAATTTAC 1199 consensus_5917#1 TAAACGCTTCGGCCGGAGCAGCAGCAGCAGCAACAACAACAAACCCATTTATTAATTTAC 478 ************************************************************ consensus_5917#0 CAAGTACATTTATAAAATCGAAGCTGTGTGTTGTGTGTGGGCTGCTGCAAAACCATCCGC 1259 consensus_5917#1 CAAGTACATTTATAAAATCGAAGCTGTGTGTTGTGTGTGGGCTGCTGCAAAACCATCCGC 538 ************************************************************ consensus_5917#0 AGCAGGACAGCCAACACAGCACAGGACTTATTTACACACAGAAAAGCAAATCAGACACTC 1319 consensus_5917#1 AGCAGGACAGCCAACACAGCACAGGACTTATTTACACACAGAAAAGCAAATCAGACACTC 598 ************************************************************ consensus_5917#0 AAAA-GCAAGGCATGGCACGCGGGCGGTATGATGATTTGATTTTTTTTATTGGACAGAGA 1378 consensus_5917#1 AAAAAGCAAGGCATGGCACGCGGGCGGTATGA---------------------------- 630 **** *************************** consensus_5917#0 AGAGTTTCACACGCACACACCAACACACACACACAATACAGTGCTGCAAATTGGGACTGC 1438 consensus_5917#1 ------------------------------------------------------------ consensus_5917#0 ACTGTGGGACCCACATCCGCAAGCGTAAGGATCTTCCCGGTGACCCAACTGACCCCAGCA 1498 consensus_5917#1 ------------------------------------------------------------ consensus_5917#0 CGAAGCCGTACCAGATCATCCAGGACATCCGCAGGCT 1535 consensus_5917#1 ------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||