cluster # 592

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Anopheles gambiae
cluster # 592 cluster # 592 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_592#0 length = 942 sequences # 1

consensus_592#1 length = 728 sequences # 1

consensusID : consensus_592#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 942
fasta sequence

                              [GCAGAATCNGCACGAGGCGTCACTGTACTACGACGTGCGCCCAGTTTCGCAGACCTCCATCCAGGACATTCGGGGCGCACTGTTTCTGATGATAAGCGAGCTAGTGTACACGATCAGTTACGGTGTGTTTTACACATTCCCTGCGGAGATGCCACTGATCCGCCGGGAGGTTGGCGAGAAGAGCTACACCCTTTCCATGTACTACCTGCACAAGGTGCTGTACAGTGTGCCGAGAGCGTTCCTTGAGTCGTTTCTGTTCATCGGCGTGGCTTATGCGTTCGTTGGCTTTTCGACTGACTTTATCACGTACTGCTGCATGTCGCTAGTGTCCAGTGGGGCGAGTGTGCTTGCCATGGCATACGGCTATCTGCTTTCCTGTACAACCGGCACCATGAACATGGCGATCGAGACGAGCAACATCATCTTTTTGGCGTTTATGCTTCTTGGCGGTCTCTATCTCAACCTTCGAGCCTTTCCGCTGTTGAAGTATCTGTCGTTTTTCTTCTTCGCCAGCGAGGGTGTCTCCGTGTACTACTGGTTGCCGATCCAGTCGGATCCCCTGCAATTGGTACGTCTTCGAGGCTGAACGAAACGATCACCTGTCTAGCGAACGGGCAAAGGCCGTGCTGGAGGATGCCGGGTATGCTACCTCGTAACGAGGCCCTGGAACCTACAAGTACCTCGTCATGGGCGGTGGNAAATNTGTCCTCGGTACATCTGGTCGNGGTACCATTCGCTGATTAGCGGGAAAGTTTGGTTCCCGGTAAANGGGGCGGGGNAANTCTAGTTAAAAGACACCCGGCCGAAAAAGAAACGGAAGANTCTCGANAAAAGCGNGCGGANTTAAGAAGAGAAGGCACATTAAAANGTNGTTTGTTACCCCAGCGTCGNTTANAAACANAGCAGCACAGAGACAAGACAAGGGCNCANTTTTCGGGGCGC]

[+] EMBL BX467753             [GCAGAATCNGCACGAGGCGTCACTGTACTACGACGTGCGCCCAGTTTCGCAGACCTCCATCCAGGACATTCGGGGCGCACTGTTTCTGATGATAAGCGAGCTAGTGTACACGATCAGTTACGGTGTGTTTTACACATTCCCTGCGGAGATGCCACTGATCCGCCGGGAGGTTGGCGAGAAGAGCTACACCCTTTCCATGTACTACCTGCACAAGGTGCTGTACAGTGTGCCGAGAGCGTTCCTTGAGTCGTTTCTGTTCATCGGCGTGGCTTATGCGTTCGTTGGCTTTTCGACTGACTTTATCACGTACTGCTGCATGTCGCTAGTGTCCAGTGGGGCGAGTGTGCTTGCCATGGCATACGGCTATCTGCTTTCCTGTACAACCGGCACCATGAACATGGCGATCGAGACGAGCAACATCATCTTTTTGGCGTTTATGCTTCTTGGCGGTCTCTATCTCAACCTTCGAGCCTTTCCGCTGTTGAAGTATCTGTCGTTTTTCTTCTTCGCCAGCGAGGGTGTCTCCGTGTACTACTGGTTGCCGATCCAGTCGGATCCCCTGCAATTGGTACGTCTTCGAGGCTGAACGAAACGATCACCTGTCTAGCGAACGGGCAAAGGCCGTGCTGGAGGATGCCGGGTATGCTACCTCGTAACGAGGCCCTGGAACCTACAAGTACCTCGTCATGGGCGGTGGNAAATNTGTCCTCGGTACATCTGGTCGNGGTACCATTCGCTGATTAGCGGGAAAGTTTGGTTCCCGGTAAANGGGGCGGGGNAANTCTAGTTAAAAGACACCCGGCCGAAAAAGAAACGGAAGANTCTCGANAAAAGCGNGCGGANTTAAGAAGAGAAGGCACATTAAAANGTNGTTTGTTACCCCAGCGTCGNTTANAAACANAGCAGCACAGAGACAAGACAAGGGCNCANTTTTCGGGGCGC]




>consensus_592#0
GCAGAATCNGCACGAGGCGTCACTGTACTACGACGTGCGCCCAGTTTCGCAGACCTCCAT
CCAGGACATTCGGGGCGCACTGTTTCTGATGATAAGCGAGCTAGTGTACACGATCAGTTA
CGGTGTGTTTTACACATTCCCTGCGGAGATGCCACTGATCCGCCGGGAGGTTGGCGAGAA
GAGCTACACCCTTTCCATGTACTACCTGCACAAGGTGCTGTACAGTGTGCCGAGAGCGTT
CCTTGAGTCGTTTCTGTTCATCGGCGTGGCTTATGCGTTCGTTGGCTTTTCGACTGACTT
TATCACGTACTGCTGCATGTCGCTAGTGTCCAGTGGGGCGAGTGTGCTTGCCATGGCATA
CGGCTATCTGCTTTCCTGTACAACCGGCACCATGAACATGGCGATCGAGACGAGCAACAT
CATCTTTTTGGCGTTTATGCTTCTTGGCGGTCTCTATCTCAACCTTCGAGCCTTTCCGCT
GTTGAAGTATCTGTCGTTTTTCTTCTTCGCCAGCGAGGGTGTCTCCGTGTACTACTGGTT
GCCGATCCAGTCGGATCCCCTGCAATTGGTACGTCTTCGAGGCTGAACGAAACGATCACC
TGTCTAGCGAACGGGCAAAGGCCGTGCTGGAGGATGCCGGGTATGCTACCTCGTAACGAG
GCCCTGGAACCTACAAGTACCTCGTCATGGGCGGTGGNAAATNTGTCCTCGGTACATCTG
GTCGNGGTACCATTCGCTGATTAGCGGGAAAGTTTGGTTCCCGGTAAANGGGGCGGGGNA
ANTCTAGTTAAAAGACACCCGGCCGAAAAAGAAACGGAAGANTCTCGANAAAAGCGNGCG
GANTTAAGAAGAGAAGGCACATTAAAANGTNGTTTGTTACCCCAGCGTCGNTTANAAACA
NAGCAGCACAGAGACAAGACAAGGGCNCANTTTTCGGGGCGC

consensusID : consensus_592#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 728
fasta sequence

                              [AGGTGTTTCATTGCTTCAGCGATGTGATCCTGATGCAAGATGGCGGGACCGTCTTCTACCAGGGACCAACGGCCGATCGGATAGACTTTTTCAACTCCATTGGCAAGGAGGTGCCGGCGAATGGCAATCCGGCCGATTTTTACTTCCAGCTCGTCAGTCCGGGTGCGACAACGTTCGCGGCCAGTGAGGCAGAGGAAGCAATCCAGCGGTACGAGATCGTACGCAAGGCCTGTCGGCAAAACATTGCGCGGAAGTGTCTGATGACTCGATACCATCAGGCGAAAATTATCCAAAAGTTGGCCAACGATAAGCATCGCGTATGTCGGGCGAAACAGCTGATGATCCTGCTGCATCGTACCACGCTGGACAGTATGCGAAAGTTGCGCGAATATCTTACTGTGACGGCAATATTTTTGTTTACCAGCGTTGTGATAGCGTCACTGTACTACGACGTGCGCCCAGTTTCGCAGACCTCCATCCAGGACATTCGGGGAGCACTGTTTCTGATGATAAGCGAGCTAGTGTACACGATCAGTTACGGTGTGTTTTACACATTCCCTGCGGAGATGCCACTGATCCGCCGGGAGGTTGGCGAGAAGAGCTACACCCTTTCCATGTACTACCTGCACAAGGTGCTGTACAGTGTGCCGAGAGCGTTCTTTGAGTCGTTTCTGTTCATCGGCGTGGCTTATGCGTTCGTTGGCTTTTCGACGGACTTTGCCACGTAC]

[+] EMBL BX623059             [AGGTGTTTCATTGCTTCAGCGATGTGATCCTGATGCAAGATGGCGGGACCGTCTTCTACCAGGGACCAACGGCCGATCGGATAGACTTTTTCAACTCCATTGGCAAGGAGGTGCCGGCGAATGGCAATCCGGCCGATTTTTACTTCCAGCTCGTCAGTCCGGGTGCGACAACGTTCGCGGCCAGTGAGGCAGAGGAAGCAATCCAGCGGTACGAGATCGTACGCAAGGCCTGTCGGCAAAACATTGCGCGGAAGTGTCTGATGACTCGATACCATCAGGCGAAAATTATCCAAAAGTTGGCCAACGATAAGCATCGCGTATGTCGGGCGAAACAGCTGATGATCCTGCTGCATCGTACCACGCTGGACAGTATGCGAAAGTTGCGCGAATATCTTACTGTGACGGCAATATTTTTGTTTACCAGCGTTGTGATAGCGTCACTGTACTACGACGTGCGCCCAGTTTCGCAGACCTCCATCCAGGACATTCGGGGAGCACTGTTTCTGATGATAAGCGAGCTAGTGTACACGATCAGTTACGGTGTGTTTTACACATTCCCTGCGGAGATGCCACTGATCCGCCGGGAGGTTGGCGAGAAGAGCTACACCCTTTCCATGTACTACCTGCACAAGGTGCTGTACAGTGTGCCGAGAGCGTTCTTTGAGTCGTTTCTGTTCATCGGCGTGGCTTATGCGTTCGTTGGCTTTTCGACGGACTTTGCCACGTAC]




>consensus_592#1
AGGTGTTTCATTGCTTCAGCGATGTGATCCTGATGCAAGATGGCGGGACCGTCTTCTACC
AGGGACCAACGGCCGATCGGATAGACTTTTTCAACTCCATTGGCAAGGAGGTGCCGGCGA
ATGGCAATCCGGCCGATTTTTACTTCCAGCTCGTCAGTCCGGGTGCGACAACGTTCGCGG
CCAGTGAGGCAGAGGAAGCAATCCAGCGGTACGAGATCGTACGCAAGGCCTGTCGGCAAA
ACATTGCGCGGAAGTGTCTGATGACTCGATACCATCAGGCGAAAATTATCCAAAAGTTGG
CCAACGATAAGCATCGCGTATGTCGGGCGAAACAGCTGATGATCCTGCTGCATCGTACCA
CGCTGGACAGTATGCGAAAGTTGCGCGAATATCTTACTGTGACGGCAATATTTTTGTTTA
CCAGCGTTGTGATAGCGTCACTGTACTACGACGTGCGCCCAGTTTCGCAGACCTCCATCC
AGGACATTCGGGGAGCACTGTTTCTGATGATAAGCGAGCTAGTGTACACGATCAGTTACG
GTGTGTTTTACACATTCCCTGCGGAGATGCCACTGATCCGCCGGGAGGTTGGCGAGAAGA
GCTACACCCTTTCCATGTACTACCTGCACAAGGTGCTGTACAGTGTGCCGAGAGCGTTCT
TTGAGTCGTTTCTGTTCATCGGCGTGGCTTATGCGTTCGTTGGCTTTTCGACGGACTTTG
CCACGTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_592#0      GCAGAATCNGCACGAGGCGTCACTGTACTACGACGTGCGCCCAGTTTCGCAGACCTCCAT 60
consensus_592#1      ------------------------------------------------------------
                                                                                 

consensus_592#0      CCAGGACATTCGGGGCGCACTGTTTCTGATGATAAGCGAGCTAGTGTACACGATCAGTTA 120
consensus_592#1      ------------------------------------------------------------
                                                                                 

consensus_592#0      CGGTGTGTTTTACACATTCCCTGCGGAGATGCCACTGATCCGCCGGGAGGTTGGCGAGAA 180
consensus_592#1      --AGGTGTTTCA-----TTGCTTCAGCGATG----TGATCCTGATGCAAGATGGCGGGAC 49
                         ****** *     *  ** * * ****    ******    * * * ***** ** 

consensus_592#0      GAGCTACACCCTTTCCATGTACTACCTGCACAAGGTGCTGTACAGTGTGCCGAGAGCGTT 240
consensus_592#1      CGTCT-----TCTACCAGGGACCAACGGC---CGATCGGATAGACTTTTTCAACTCCATT 101
                        **       * *** * ** * * **    * *    ** * * *  * *   * **

consensus_592#0      CCTTGAGTCGTTTCTGTTCATCGGCGTGGCTTATGCGTTCGTTGGCTTTTCGACTGACTT 300
consensus_592#1      GGCAAGGAGGTGCCGGC------GAATGGCA-ATCCG---GCCGATTTTTACTTCCAGCT 151
                           *  **  * *       *  ****  ** **   *  *  ****      *  *

consensus_592#0      TATCACGTACTGCTGC-ATGTCGCTAGTGTCCAGTGGGGC-GAGTGTGCTTGCCA-TGGC 357
consensus_592#1      CGTCA-GTCCGGGTGCGACAACGTTCGCGGCCAGTGAGGCAGAGGAAGCAATCCAGCGGT 210
                       *** ** * * *** *   ** * * * ****** *** ***   **   ***  ** 

consensus_592#0      ATACGGCTATCTGCTTT-CCTGT--ACAACCGGCACCATGAACATGGCGATCGAGACGAG 414
consensus_592#1      ACGAGATCGTACGCAAGGCCTGTCGGCAAAACATTGCGCGGAAGTGTCTGATGACTCGA- 269
                     *   *    *  **    *****   ***       *  * *  ** *    **  *** 

consensus_592#0      CAACATCATCTTTTTGGCGTTTAT--GCTTCTTGGCGGTCTCTATCTCAACCTTCGAGCC 472
consensus_592#1      TACCATCAGGCGAAAATTATCCAAAAGTTGGCCAACGATAAGCATCGCGTATGTCGGGCG 329
                      * *****           *  *   * *      ** *    *** *     *** ** 

consensus_592#0      TTTCCGCTGTTGAAGTATCTGTCGTTTTTCTTCTTCGCCAGCGAG-GGTGTCTCCGTGTA 531
consensus_592#1      AAACAGCTGATGATCCTGCTGCATCGTACCACGCTGGACAGTATGCGAAAGTTGCGCGAA 389
                        * **** ***     ***     *  *    * * ***   * *     * ** * *

consensus_592#0      CTACTGGTTGCCGATCCAGTCGGATCCCCTGCAATTGGTACGTCTTCGAGGCTGAACGAA 591
consensus_592#1      TATCTTACTGTGACGGCAATATTTTTGTTTACCAGCGTTGTGATAGCGTCACTGTACT-- 447
                        **   **      ** *    *    * * *  * *  *    **   *** **   

consensus_592#0      ACGATCACCTGTCTAGCGAACGGGCAAAGGCCGTGCTGGAGGATGCCGGGTATGCTACCT 651
consensus_592#1      ACGA-CGTGCGCCCAGT---TTCGCAGACCTCCATCCAGGACATTCGGGGAGCACTGTTT 503
                     **** *    * * **       *** *   *   *  *   ** * ***    **   *

consensus_592#0      CGTAACGAGGCCCTGGAACCTACAAGTACCTCGTCATGGGCGGTGGNAAATNTGTCCTCG 711
consensus_592#1      C-TGATGATA------AGCGAGCTAGTGTA----CACGATCAGTTACGG-TGTGTTTTAC 551
                     * * * **        * *   * ***       ** *  * **      * ***  *  

consensus_592#0      GTACATCTGGTCGNGGTACCATTCGCTGATTAGCGGGAAAGTTTGGTTCCCGGTAAANGG 771
consensus_592#1      ACATTCCCTGCGGAGATGCCA----CTGATCCGCCGGGAGGTT--------GGCGAGAAG 599
                       *   *  *  * * * ***    *****  ** ** * ***        **  *   *

consensus_592#0      GGCGGGGNAANTCTAGTTAAAAGACACCCGGCCGAAAAAGAAACGGAAGANTCTCGANAA 831
consensus_592#1      AGC----TACACCCTTTCCATGTACTACCTGC---ACAAGGTGCTGTACAGTGT-GCCGA 651
                      **     *   *   *  *   **  ** **   * ***   * * * * * * *   *

consensus_592#0      AAGCGNGCGGANTTAAGAAGAGAAGGCACATTAAAANGTNGTTTGTTACCCCAGCGTCGN 891
consensus_592#1      GAGCGTTC---TTTGAGTCGTTTCTGTTCATCG--GCGTGGCTTATGCGTTCGTTGGCTT 706
                      ****  *    ** **  *     *  ***      ** * ** *     *   * *  

consensus_592#0      TTANAAACANAGCAGCACAGAGACAAGACAAGGGCNCANTTTTCGGGGCGC 942
consensus_592#1      TTCGACGGACTTTGCCACGTAC----------------------------- 728
                     **  *   *      ***  *