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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5932#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1052 fasta sequence
[CATTCTGAATGAGGCTGTTCTGGGAGTGCCGGTGAAATCGGTCGATAAGAAAGAGATGGAACAGTCTCCCTTTAGACAAGGCAAAGTGGTTGCACCGTACCGTATCACCCATCCGTGGCTGTTGTTCAACTCGATCTACAAACTTACCGATGCGGCAACTGCGGAACTCAACCAGAAGAAACAGCTCGATGACTTCTCCAGGAAGATGATTCGTCGTCGACGTGAAATTCTGAAGACACTTTCTCCGTCCGATCGACGCTGTCTGCTGGACTTTATGATCGAGATCTCGAACGAAAACCCAGAGTTTACGGAGGACGATATCATCGATGAGGCCTGCACGTTCATGTTGGCAGGTCAAGATTCAGTAGGTGCTGCCGTTGCCTTCACACTGTTCCTTCTGGCCCGCCACCAGGACCAGCAGGCTAAGTGCTATGAGGAGATCGAGCGGCACATCGGTACGGACTGCTCTAAGCCACCGTCGGCCGAGGGAATACGCGAGCTGCGCCATCTGGAAGCGTGCATCAAGGAAAGCCTTCGACTGTACCCCAGCGTCCCGCTGATGGCAAGAAAGATCGGAGAAGATGTACGAGTCGGCAAGTACAACCTGCCGACCGGGACGGAGATTATGATCCTGCCGTACGCAACGCACCGTCTCGAGCACATCTATCCCGACCCGGAGCGGTTCGATCCGGAGCGCTTCGGTGATGGGGCACCGCATCAGAACCCGTACGCCTTCCTACCGTTCAGTGCGGGTCCGCGCAACTGCATCGGCTACAAGTTTGCGTACATCGAGATGAAGACGGTCATTGCGCGAGTGTTGCAGAACTTCCACCTGTCGCCGGCACCGGGCAAGGAGGAGGTGCAGCCCATCTTCCGCATGACGTTGCGAGCGCGCGGTGGTCTTTGGGTAAAGATGACGCCGCGCAAAGTGGTTTCGTAGTCCATAGCGTGGGATGGGGTTGACCAGTGTGGGTGTGAGCA--GCGGGACCAGTGGGAAATGTGCGAATGGAAGGAACTAAAATAAGCGATAACTTGATAAGCCGGTCGGGGAA]
[+] EMBL BX608982 [CATTCTGAATGAGGCTGTTCTGGGAGTGCCGGTGAAATCGGTCGATAAGAAAGAGATGGAACAGTCTCCCTTTAGACAAGGCAAAGTGGTTGCACCGTACCGTATCACCCATCCGTGGCTGTTGTTCAACTCGATCTACAAACTTACCGATGCGGCAACTGCGGAACTCAACCAGAAGAAACAGCTCGATGACTTCTCCAGGAAGATGATTCGTCGTCGACGTGAAATTCTGAAGACACTTTCTCCGTCCGATCGACGCTGTCTGCTGGACTTTATGATCGAGATCTCGAACGAAAACCCAGAGTTTACGGAGGACGATATCATCGATGAGGCCTGCACGTTCATGTTGGCAGGTCAAGATTCAGTAGGTGCTGCCGTTGCCTTCACACTGTTCCTTCTGGCCCGCCACCAGGACCAGCAGGCTAAGTGCTATGAGGAGATCGAGCGGCACATCGGTACGGACTGCTCTAAGCCACCGTCGGCCGAGGGAATACGCGAGCTGCGCCATCTGGAAGCGTGCATCAAGGAAAGCCTTCGACTGTACCCCAGCGTCCCGCTGATGGCAAGAAAGATCGGAGAAGATGTACGAGTCGGCAAGTACAACCTGCCGACCGGGACGGAGATTATGATCCTGCCGTACGCAACGCACCGTCTCGAGCACATCTATCCCGACCCGGAGCGGTTCGATCCGGAGCGCTTCGG ]
[+] EMBL BM631806 [ ccGAAGACACTTTCTCCGTCCGATCGACGCTGTCTGCTGGACTTTATGATCGAGATCTCGAACGAAAACCCCGACTTTACGGAGGACGATATCATCGATGAGGCCTGCACGTTCATGTTGGCAGGTCAAGATTCAGTAGGTGCTGCCGTTGCCTTCACACTGTTCCTTCTGGCCCGTCACCAGGACCAGCAGGCCAAGTGCTATGAGGAGATCGAACGGCACATCGGTACGGACTGCTCTAAGCCACCGTCGGCCGAGGGTATACGCGAGCTGCGCCACCTGGAAGCGTGCATCAAGGAAAGCCTTCGACTGTACCCCAGCGTCCCGCTGATGGCAAGAAAGATCGGGGAAGATGTACGAGTCGGCAAGTACAACCTGCCGACCGGGACGGAGATTATGATCCTGCCGTACGCAACGCACCGTCTCGAGCACATCTATCCCGACCCGGAGCGGTTCGATCCGGAGCGCTTCGGTGATGGGGCACCGCATCAGAACCCGTACGCCTTCCTACCGTTCAGTGCGGGTCCGCGCAACTGCATCGGCTACAAGTTTGCGTACATCGAGATGAAGACGGTCATTGCGCGAGTGTTGCAGAACTTCCACCTGTCGCCGGCACCGGGCAAGGAGGAGGTGCAGCCCATCTTCCGCATGACGTTGCGAGCGCGCGGTGGTCTTTGGGTAAAGATGACGCCGCGg ]
[-] EMBL CNS090P6 [ aGGTAATTGCGCGAGTGTTGCAGAACTTCCACCTGTCGCCGGCACCGGGCAAGGAGGAGGTGCAGCCCATCTTCCGCATGACGTTGCGAGCGCGCGGTGGTCTTTGGGTAAAGATGACGCCGCGCAAAGTGGTTTCGTAGTCCATAGCGTGGGATGGGGTTGACCAGTGTGGGTGTGAGCAGCGCGGGACCAGTGGGAAATGTGCGAATGGAAGGAACTAAAAT ]
[+] EMBL BM653446 [ CACCGGGCAAGGAGGAGGTGCAGCCCATCTTCCGCATGACGTTGCGAGCGCGCGGCGGTCTTTGGGTAAAGATGACGCCGCGCAAAGTGGTTTCGTAGTCCGTAGCGTGGGATGGGGTTGACCAGTGTGGGTGTGAGCA GCGGGACCAGTGGGAAATGTGCGAATGGAAGGAATTAAAATAAGCGATAACTTGATAAGCCGGTCGGGGAA]
consensusID : consensus_5932#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 974 fasta sequence
[CAGATCGCCACGAGGTTATCGACACGTTCACGGACAGTGCATCGTTTCTGATCGACAAGCTGCCGAAGGAGGAAACGGTACTAAACGTTACCGAGTACGTGAACAATTGTGTGCTGGACATTCTGAATGAGGCTGTTCTGGGAGTGCCGGTGAAATCGGTCGATAAGAAAGAGATGGAACAGTCTCCCTTTAGACAAGGCAAAGTGGTTGCACCGTACCGTATCACCCATCCGTGGCTGTTGTTCAACTCGATCTACAAACTTACCGATGCGGCAACTGCGGAACTCAACCAGAAGAAACAGCTCGATGACTTCTCCAGGAAGATGATTCGTCGTCGACGTGAAATTCTGAAGACACTTTCTCCGTCCGATCGACGCTGTCTGCTGGACTTTATGATCGAGATCTCGAACGAAAACCCAGAGTTTACGGAGGACGATATCATCGATGAGGCCTGCACGTTCATGTTGGCAGGTCAAGATTCAGTAGGTGCTGCCGTTGCCTTCACACTGTTCCTTCTGGCCCGCACCAGGACCAGCAGGCTAAGTGCTATGAGGAGATCGAGCGGCACATCGGTACGGACTGCTCTAAGCCACCGTCGGCCGAGGGGAATACGCGGAGCTGCGGCCATCTGGGAAGCGTGCATCAAGGGAAAGCCTTCGAACTGTACCCCAAGCGGTCCCGGCTGAATGGGCNNAGGAAAGATCCGGAGGAAGAATGTACCGAAGATCCGGCGAAGTACAAACCTTGGCCGGACCGGGGGAACGGGAGGATTNTTGATCCCTGGCNGTAAGGCAAAGNGGCACCGGTCTTGGAAGCACAATNNTTNTNCCCGAAACCNGAAACGGGTTCNAATCCCGGAAGCGGNNTTCAGGTAAATCGGGGNACACCGGANTCAAAAACCCGTAACGNCTTCATACNCGGGTAAAGTGGAGGGAACCAGGGAAACGTTGTCATTCGGGCAGAACAAAGTTTGG]
[+] EMBL BX467651 [CAGATCGCCACGAGGTTATCGACACGTTCACGGACAGTGCATCGTTTCTGATCGACAAGCTGCCGAAGGAGGAAACGGTACTAAACGTTACCGAGTACGTGAACAATTGTGTGCTGGACATTCTGAATGAGGCTGTTCTGGGAGTGCCGGTGAAATCGGTCGATAAGAAAGAGATGGAACAGTCTCCCTTTAGACAAGGCAAAGTGGTTGCACCGTACCGTATCACCCATCCGTGGCTGTTGTTCAACTCGATCTACAAACTTACCGATGCGGCAACTGCGGAACTCAACCAGAAGAAACAGCTCGATGACTTCTCCAGGAAGATGATTCGTCGTCGACGTGAAATTCTGAAGACACTTTCTCCGTCCGATCGACGCTGTCTGCTGGACTTTATGATCGAGATCTCGAACGAAAACCCAGAGTTTACGGAGGACGATATCATCGATGAGGCCTGCACGTTCATGTTGGCAGGTCAAGATTCAGTAGGTGCTGCCGTTGCCTTCACACTGTTCCTTCTGGCCCGCACCAGGACCAGCAGGCTAAGTGCTATGAGGAGATCGAGCGGCACATCGGTACGGACTGCTCTAAGCCACCGTCGGCCGAGGGGAATACGCGGAGCTGCGGCCATCTGGGAAGCGTGCATCAAGGGAAAGCCTTCGAACTGTACCCCAAGCGGTCCCGGCTGAATGGGCNNAGGAAAGATCCGGAGGAAGAATGTACCGAAGATCCGGCGAAGTACAAACCTTGGCCGGACCGGGGGAACGGGAGGATTNTTGATCCCTGGCNGTAAGGCAAAGNGGCACCGGTCTTGGAAGCACAATNNTTNTNCCCGAAACCNGAAACGGGTTCNAATCCCGGAAGCGGNNTTCAGGTAAATCGGGGNACACCGGANTCAAAAACCCGTAACGNCTTCATACNCGGGTAAAGTGGAGGGAACCAGGGAAACGTTGTCATTCGGGCAGAACAAAGTTTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5932#0 ------------------------------------------------------------
consensus_5932#1 CAGATCGCCACGAGGTTATCGACACGTTCACGGACAGTGCATCGTTTCTGATCGACAAGC 60
consensus_5932#0 ----------------------------------------------------------CA 2
consensus_5932#1 TGCCGAAGGAGGAAACGGTACTAAACGTTACCGAGTACGTGAACAATTGTGTGCTGGACA 120
**
consensus_5932#0 TTCTGAATGAGGCTGTTCTGGGAGTGCCGGTGAAATCGGTCGATAAGAAAGAGATGGAAC 62
consensus_5932#1 TTCTGAATGAGGCTGTTCTGGGAGTGCCGGTGAAATCGGTCGATAAGAAAGAGATGGAAC 180
************************************************************
consensus_5932#0 AGTCTCCCTTTAGACAAGGCAAAGTGGTTGCACCGTACCGTATCACCCATCCGTGGCTGT 122
consensus_5932#1 AGTCTCCCTTTAGACAAGGCAAAGTGGTTGCACCGTACCGTATCACCCATCCGTGGCTGT 240
************************************************************
consensus_5932#0 TGTTCAACTCGATCTACAAACTTACCGATGCGGCAACTGCGGAACTCAACCAGAAGAAAC 182
consensus_5932#1 TGTTCAACTCGATCTACAAACTTACCGATGCGGCAACTGCGGAACTCAACCAGAAGAAAC 300
************************************************************
consensus_5932#0 AGCTCGATGACTTCTCCAGGAAGATGATTCGTCGTCGACGTGAAATTCTGAAGACACTTT 242
consensus_5932#1 AGCTCGATGACTTCTCCAGGAAGATGATTCGTCGTCGACGTGAAATTCTGAAGACACTTT 360
************************************************************
consensus_5932#0 CTCCGTCCGATCGACGCTGTCTGCTGGACTTTATGATCGAGATCTCGAACGAAAACCCAG 302
consensus_5932#1 CTCCGTCCGATCGACGCTGTCTGCTGGACTTTATGATCGAGATCTCGAACGAAAACCCAG 420
************************************************************
consensus_5932#0 AGTTTACGGAGGACGATATCATCGATGAGGCCTGCACGTTCATGTTGGCAGGTCAAGATT 362
consensus_5932#1 AGTTTACGGAGGACGATATCATCGATGAGGCCTGCACGTTCATGTTGGCAGGTCAAGATT 480
************************************************************
consensus_5932#0 CAGTAGGTGCTGCCGTTGCCTTCACACTGTTCCTTCTGGCCCGCCACCAGGACCAGCAGG 422
consensus_5932#1 CAGTAGGTGCTGCCGTTGCCTTCACACTGTTCCTTCTGGCCCGC-ACCAGGACCAGCAGG 539
******************************************** ***************
consensus_5932#0 CTAAGTGCTATGAGGAGATCGAGCGGCACATCGGTACGGACTGCTCTAAGCCACCGTCGG 482
consensus_5932#1 CTAAGTGCTATGAGGAGATCGAGCGGCACATCGGTACGGACTGCTCTAAGCCACCGTCGG 599
************************************************************
consensus_5932#0 CCGAGGG-AATACGCG-AGCTGCG-CCATCTGG-AAGCGTGCATCAAGG-AAAGCCTTCG 537
consensus_5932#1 CCGAGGGGAATACGCGGAGCTGCGGCCATCTGGGAAGCGTGCATCAAGGGAAAGCCTTCG 659
******* ******** ******* ******** *************** **********
consensus_5932#0 A-CTGTACCCCAGCGTCCCGCTGATGGCAAGAAAGATCGGAGAAGATGTACGAGTCGGCA 596
consensus_5932#1 AACTGTACCCCAAG----CGGTCCCGGCTGAATGGGCNNAGGAAAGATCCGGAGGAAGAA 715
* ********** ** * *** * * *** *** * *
consensus_5932#0 AGTACAACCTGCCGACCGGGACGGAGATTATGATCCTGCCGTACGCAACGCACCGTCTCG 656
consensus_5932#1 TGTACCGAAGATCCGGCGAAGTACAAACCTTGGCCGGACCG-GGGGAACGGGAGGATTNT 774
**** * ** * * ** * *** * **** * *
consensus_5932#0 AGCACATCTATCCCGACCCGGAGCGGT-TCGATCCGGAGCGCTTCGGTGATGGGGCACCG 715
consensus_5932#1 TGATCCCTGGCNGTAAGGCAAAGNGGCACCGGTCTTGGAAGCA-CAATNNTTNTNCCCGA 833
* * * * ** ** ** ** * ** * * * * *
consensus_5932#0 CATCAGAACCCG-TACGCCTTCCTACCGTTCAGTGCGGGTCCGCGCAACTGCATCGGCTA 774
consensus_5932#1 AACCNGAAACGGGTTCNAATCCCGGAAGCGGNNTTCAGGTAAATCGGGGNACACCGGANT 893
* * *** * * * * * ** * * * *** ** ***
consensus_5932#0 CAAGTTTGCGTACATCGAGATGAAGACGGTCATTGCGCGAGTGTTGCAGAACTTCCACCT 834
consensus_5932#1 CAAAAACCCGTA-ACGNCTTCATACNCGGGTAAAGTG-GAGGGAACCAGGGAAAC--GTT 949
*** **** * * *** * * * *** * *** * *
consensus_5932#0 GTCGCCGGCACCGGGCAAGGAGGAGGTGCAGCCCATCTTCCGCATGACGTTGCGAGCGCG 894
consensus_5932#1 GTCATTCGGGCAGAACAAAGTTTGG----------------------------------- 974
*** * * * *** * *
consensus_5932#0 CGGTGGTCTTTGGGTAAAGATGACGCCGCGCAAAGTGGTTTCGTAGTCCATAGCGTGGGA 954
consensus_5932#1 ------------------------------------------------------------
consensus_5932#0 TGGGGTTGACCAGTGTGGGTGTGAGCAGCGGGACCAGTGGGAAATGTGCGAATGGAAGGA 1014
consensus_5932#1 ------------------------------------------------------------
consensus_5932#0 ACTAAAATAAGCGATAACTTGATAAGCCGGTCGGGGAA 1052
consensus_5932#1 --------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||