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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5933#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 901 fasta sequence
[CATTTTGTCGGTCTTTTGCTCTTTCCGTCGGGGAAAAAGTTGCTGTGATTCATTTAAAAAGCGAGCAAATGATTCAAACGATTTATAATCAGTGCCAGTGTTTGTTGTGAAACAATTTCCTTCCCGCGATCTATCGAATGAGCAGTGTGATAAAGCAATGGCGGAAATCGCTACCATTCTGAGCACCCCAGTAGATGAACAAGCCCAGCGAGACCTTGCTTCGTCCGAACAAGATGCCCAAAGCGTAACATCGGAAGAATCTTCCTACGACACAGACTACCGAAGCTACCGCTATGGATACCGCCCGTCGTACAATTCCGATGACGAACCGGAAGATGACGAGGAGGGCGAGGAAGACCCGTACCAGGAGCTGTTTATGAATGCGTACCGCTCTGCACCGCAATCGTCGGACGAAGAGGAGGGAACGATCGGAGAGGGATGCCTGAGCAAAGTGTGCAATCCGGACGCAAAGCCACTCTCCCTGATGGAGGATTGGGATCTGTGGGATTACATGGACGAAAGTGAACTGAAGGAACGGTTAAAGGACCATCCACGGCTGCTGGAAGAGATTACCCGCAAACGAAAGCGGCGCATGCTGGAGGAGGAGGACGGTGCGACGGCTCGCGAAGACGACGAGCTGTGCGATGTGATGAACCGGGCGATTAAGTGTGTCCGTACGGAAACGCCCAGTTTGACCAGTTAAAACAGTTGGCGTGATCGGTATTTTTTGTGTGAGAAATATGCCTTTCTTTTAACTGCTTCCAGCAAACAATTTACATTGCTTTTTCGCATCTTAAGCTGTG-TACTTTTATGNGGATTAATTTTTTATTGAGTTTAAACGTCGTGTACGACGATATAGAATTTAACGAATTTTCTTTCATGGGTGTAAAATTCGAAATAG]
[+] EMBL BX621895 [CATTTTGTCGGTCTTTTGCTCTTTCCGTCGGGGAAAAAGTTGCTGTGATTCATTTAAAAAGCGAGCAAATGATTCAAACGATTTATAATCAGTGCCAGTGTTTGTTGTGAAACAATTTCCTTCCCGCGATCTATCGAATGAGCAGTGTGATAAAGCAATGGCGGAAATCGCTACCATTCTGAGCACCCCAGTAGATGAACAAGCCCAGCGAGACCTTGCTTCGTCCGAACAAGATGCCCAAAGCGTAACATCGGAAGAATCTTCCTACGACACAGACTACCGAAGCTACCGCTATGGATACCGCCCGTCGTACAATTCCGATGACGAACCGGAAGATGACGAGGAGGGCGAGGAAGACCCGTACCAGGAGCTGTTTATGAATGCGTACCGCTCTGCACCGCAATCGTCGGACGAAGAGGAGGGAACGATCGGAGAGGGATGCCTGAGCAAAGTGTGCAATCCGGACGCAAAGCCACTCTCCCTGATGGAGGATTGGGATCTGTGGGATTACATGGACGAAAGTGAACTGAAGGAACGGTTAAAGGACCATCCACGGCTGCTGGAAGAGATTACCCGCAAACGAAAGCGGCGCATGCTGGAGGAGGAGGACGGTGCGACGGCTCGCGAAGACGACGAGCTGTGCGATGTGATGAACCGGGCGATTAAGTGTGTCCGTACGGAAACGCCCAGTTTGACCAGTTAAAACAGTTGGCGTGATCGGTATTTTTTGTGTGAGAAATATGCCTTTCTTTTAACTGCTTCCAGCAAACAATTTACATTGCTTTTTCGCATCTTAAGCTGTG TACTTTTATGNGGATTAATTTTTTA ]
[+] EMBL BX627782 [ CCATTCTGAGCACCCCAGTAGATGAACAAGCCCAGCGAGACCTTGCTTCGTCCGAACAAGATGCCCAAAGCGTAACATCGGAAGAATCTTCCTACGACACAGACTACCGAAGCTACCGCTATGGATACCGCCCGTCGTACAATTCCGATGACGAACCGGAAGATGACGAGGAGGGCGAGGAAGACCCGTACCAGGAGCTGTTTATGAATGCGTACCGCTCTGCACCGCAATCGTCGGACGAAGAGGAGGGAACGATCGGAGAGGGATGCCTGAGCAAAGTGTGCAATCCGGACGCAAAGCCACTCTCCCTGATGGAGGATTGGGATCTGTGGGATTACATGGACGAAAGTGAACTGAAGGAACGGTTAAAGGACCATCCACGGCTGCTGGAAGAGATTACCCGCAAACGAAAGCGGCGCATGCTGGAGGAGGAGGACGGTGCGACGGCTCGCGAAGACGACGAGCTGTGCGATGTGATGAACCGGGCGATTAAGTGTGTCCGTACGGAAACGCCCAGTTTGACCAGTTAAAACAGTTGGCGTGATCGGTATTTTTTGTGTGAGAAATATGCCTTTCTTTTAACTGCTTCCAGCAAACAATTTACATTGCTTTTTCGCA ]
[+] EMBL BX627318 [ AGCTGTTTATGAATGCGTACCGCTCTGCACCGCAATCGTCGGACGAAGAGGAGGGAACGATCGGAGAGGGATGCCTGAGCAAAGTGTGCAATCCGGACGCAAAGCCACTCTCCCTGATGGAGGATTGGGATCTGTGGGATTACATGGACGAAAGTGAACTGAAGGAACGGTTAAAGGACCATCCACGGCTGCTGGAAGAGATTACCCGCAAACGAAAGCGGCGCATGCTGGAGGAGGAGGACGGTGCGACGGCTCGCGAAGACGACGAGCTGTGCGATGTGATGAACCGGGCGATTAAGTGTGTCCGTACGGAAACGCCCAGTTTGACCAGTTAAAACAGTTGGCGTGATCGGTATNTTTTGTGTGAGAAATATGCCTTTCTTTTAACTGCTTCCAGCAAACAATTTACATTGCTTTTTCGCATCTTAAGCTGTGTTACTTTTATGTGGATTAATTTTTTATTGAGTTTAAACGTCGTGTACGACGATATAGAATTTAACGAATTTTCTTTCATGGGTGTAAAATTCGAAATAG]
consensusID : consensus_5933#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 654 fasta sequence
[TACATTTTGTCGGTCTTTTGCTCTTTCCGTCGGGGAAAAAGTTGCTGTGATTCATTTAAAAAGCGAGCAAATGATTCAAACGATTTATAATCAGTGCCAGTGTTTGTTGTGAAACAATTTCCTTCCCGCGATCTATCGAATGAGCAGTGTGATAAAGCAATGGCGGAAATGTATGATTTGCTAACAGAGATTGTCGTGGCTATACGAGCTGAATTGATTGTTTTGGTTTTAGCGCTACCATTCTGAGCACCCCAGTAGATGAACAAGCCCAGCGAGACCTTGCTTCGTCCGAACAAGATGCCCAAAGCGTAACATCGGAAGAATCTTCCTACGACACAGACTACCGAAGCTACCGCTATGGATACCGCCCGTCGTACAATTCCGATGACGAACCGGAAGATGACGAGGAGGGCGAGGAAGACCCGTACCAGGAGCTGTTTATGAATGCGTACCGCTCTGCACCGCAATCGTCGGACGAAGAGGAGGGAACGATCGGAGAGGGATGCCTGAGCAAAGTGTGCAATCCGGACGCAAAGCCACTCTCCCTGATGGAGGATTGGGATCTGTGGGATTACATGGACGAAAGTGAACTGAAGGAACGGTTAAAGGACCATCCACGGCTGCTGGAAGAGATTACCCGCAAACGAAAGCGGC]
[+] EMBL BX625057 [TACATTTTGTCGGTCTTTTGCTCTTTCCGTCGGGGAAAAAGTTGCTGTGATTCATTTAAAAAGCGAGCAAATGATTCAAACGATTTATAATCAGTGCCAGTGTTTGTTGTGAAACAATTTCCTTCCCGCGATCTATCGAATGAGCAGTGTGATAAAGCAATGGCGGAAATGTATGATTTGCTAACAGAGATTGTCGTGGCTATACGAGCTGAATTGATTGTTTTGGTTTTAGCGCTACCATTCTGAGCACCCCAGTAGATGAACAAGCCCAGCGAGACCTTGCTTCGTCCGAACAAGATGCCCAAAGCGTAACATCGGAAGAATCTTCCTACGACACAGACTACCGAAGCTACCGCTATGGATACCGCCCGTCGTACAATTCCGATGACGAACCGGAAGATGACGAGGAGGGCGAGGAAGACCCGTACCAGGAGCTGTTTATGAATGCGTACCGCTCTGCACCGCAATCGTCGGACGAAGAGGAGGGAACGATCGGAGAGGGATGCCTGAGCAAAGTGTGCAATCCGGACGCAAAGCCACTCTCCCTGATGGAGGATTGGGATCTGTGGGATTACATGGACGAAAGTGAACTGAAGGAACGGTTAAAGGACCATCCACGGCTGCTGGAAGAGATTACCCGCAAACGAAAGCGGC]
consensusID : consensus_5933#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 648 fasta sequence
[GTCTTTTGCTCTTTCCGTCGGGGAAAAAGTTGCTGTGATTCATTTAAAAAGCGAGCAAATGATTCAAACGATTTATAATCAGTGCCAGTGTTTGTTGTGAAACAATTTCCTTCCCGCGATCTATCGAATGAGCAGTGTGATAAAGCAATGGCGGAAATCGCTACCATTCTGAGCACCCCAGTAGATGAACAAGCCCAGCGAGACCTTGCTTCGTCCGAACAAGATGCCCAAAGCGTAACATCGGAAGAATCTTCCTACGACACAGACTACCGAAGCTACCGCTATGGATACCGCCCGTCGTACAATTCCGATGACGAACCGGAAGATGACGAGGAGGGCGAGGAAGACCCGTACCAGGAGCTACCGCTATGGATACCGCCCGTCGTACAATTCCGATGACGAACCGGAAGATGACGAGGAGGGCGAGGAAGACCCGTACCAGGAGCTGTTTATGAATGCGTACCGCTCTGCACCGCAATCGTCGGACGAAGAGGAGGGAACGATCGGAGAGGGATGCCTGAGCAAAGTGTGCAATCCGGACGCAAAGCCACTCTCCCTGATGGAGGATTGGGATCTGTGGGATTACATGGACGAAAGTGAACTGAAGGAACGGTTAAAGGACCATCCACGGCTGCTGGAAGAGATTAC]
[+] EMBL BX623363 [GTCTTTTGCTCTTTCCGTCGGGGAAAAAGTTGCTGTGATTCATTTAAAAAGCGAGCAAATGATTCAAACGATTTATAATCAGTGCCAGTGTTTGTTGTGAAACAATTTCCTTCCCGCGATCTATCGAATGAGCAGTGTGATAAAGCAATGGCGGAAATCGCTACCATTCTGAGCACCCCAGTAGATGAACAAGCCCAGCGAGACCTTGCTTCGTCCGAACAAGATGCCCAAAGCGTAACATCGGAAGAATCTTCCTACGACACAGACTACCGAAGCTACCGCTATGGATACCGCCCGTCGTACAATTCCGATGACGAACCGGAAGATGACGAGGAGGGCGAGGAAGACCCGTACCAGGAGCTACCGCTATGGATACCGCCCGTCGTACAATTCCGATGACGAACCGGAAGATGACGAGGAGGGCGAGGAAGACCCGTACCAGGAGCTGTTTATGAATGCGTACCGCTCTGCACCGCAATCGTCGGACGAAGAGGAGGGAACGATCGGAGAGGGATGCCTGAGCAAAGTGTGCAATCCGGACGCAAAGCCACTCTCCCTGATGGAGGATTGGGATCTGTGGGATTACATGGACGAAAGTGAACTGAAGGAACGGTTAAAGGACCATCCACGGCTGCTGGAAGAGATTAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5933#0 --CATTTTGTCGGTCTTTTGCTCTTTCCGTCGGGGAAAAAGTTGCTGTGATTCATTTAAA 58
consensus_5933#1 TACATTTTGTCGGTCTTTTGCTCTTTCCGTCGGGGAAAAAGTTGCTGTGATTCATTTAAA 60
consensus_5933#2 ------------GTCTTTTGCTCTTTCCGTCGGGGAAAAAGTTGCTGTGATTCATTTAAA 48
************************************************
consensus_5933#0 AAGCGAGCAAATGATTCAAACGATTTATAATCAGTGCCAGTGTTTGTTGTGAAACAATTT 118
consensus_5933#1 AAGCGAGCAAATGATTCAAACGATTTATAATCAGTGCCAGTGTTTGTTGTGAAACAATTT 120
consensus_5933#2 AAGCGAGCAAATGATTCAAACGATTTATAATCAGTGCCAGTGTTTGTTGTGAAACAATTT 108
************************************************************
consensus_5933#0 CCTTCCCGCGATCTATCGAATGAGCAGTGTGATAAAGCAATGGCGGAAAT---------- 168
consensus_5933#1 CCTTCCCGCGATCTATCGAATGAGCAGTGTGATAAAGCAATGGCGGAAATGTATGATTTG 180
consensus_5933#2 CCTTCCCGCGATCTATCGAATGAGCAGTGTGATAAAGCAATGGCGGAAAT---------- 158
**************************************************
consensus_5933#0 ----------------------------------------------------CGCTACCA 176
consensus_5933#1 CTAACAGAGATTGTCGTGGCTATACGAGCTGAATTGATTGTTTTGGTTTTAGCGCTACCA 240
consensus_5933#2 ----------------------------------------------------CGCTACCA 166
********
consensus_5933#0 TTCTGAGCACCCCAGTAGATGAACAAGCCCAGCGAGACCTTGCTTCGTCCGAACAAGATG 236
consensus_5933#1 TTCTGAGCACCCCAGTAGATGAACAAGCCCAGCGAGACCTTGCTTCGTCCGAACAAGATG 300
consensus_5933#2 TTCTGAGCACCCCAGTAGATGAACAAGCCCAGCGAGACCTTGCTTCGTCCGAACAAGATG 226
************************************************************
consensus_5933#0 CCCAAAGCGTAACATCGGAAGAATCTTCCTACGACACAGACTACCGAAGCTACCGCTATG 296
consensus_5933#1 CCCAAAGCGTAACATCGGAAGAATCTTCCTACGACACAGACTACCGAAGCTACCGCTATG 360
consensus_5933#2 CCCAAAGCGTAACATCGGAAGAATCTTCCTACGACACAGACTACCGAAGCTACCGCTATG 286
************************************************************
consensus_5933#0 GATACCGCCCGTCGTACAATTCCGATGACGAACCGGAAGATGACGAGGAGGGCGAGGAAG 356
consensus_5933#1 GATACCGCCCGTCGTACAATTCCGATGACGAACCGGAAGATGACGAGGAGGGCGAGGAAG 420
consensus_5933#2 GATACCGCCCGTCGTACAATTCCGATGACGAACCGGAAGATGACGAGGAGGGCGAGGAAG 346
************************************************************
consensus_5933#0 ACCCGTACCAGGAGCT-------------------------------------------- 372
consensus_5933#1 ACCCGTACCAGGAGCT-------------------------------------------- 436
consensus_5933#2 ACCCGTACCAGGAGCTACCGCTATGGATACCGCCCGTCGTACAATTCCGATGACGAACCG 406
****************
consensus_5933#0 -----------------------------------------GTTTATGAATGCGTACCGC 391
consensus_5933#1 -----------------------------------------GTTTATGAATGCGTACCGC 455
consensus_5933#2 GAAGATGACGAGGAGGGCGAGGAAGACCCGTACCAGGAGCTGTTTATGAATGCGTACCGC 466
*******************
consensus_5933#0 TCTGCACCGCAATCGTCGGACGAAGAGGAGGGAACGATCGGAGAGGGATGCCTGAGCAAA 451
consensus_5933#1 TCTGCACCGCAATCGTCGGACGAAGAGGAGGGAACGATCGGAGAGGGATGCCTGAGCAAA 515
consensus_5933#2 TCTGCACCGCAATCGTCGGACGAAGAGGAGGGAACGATCGGAGAGGGATGCCTGAGCAAA 526
************************************************************
consensus_5933#0 GTGTGCAATCCGGACGCAAAGCCACTCTCCCTGATGGAGGATTGGGATCTGTGGGATTAC 511
consensus_5933#1 GTGTGCAATCCGGACGCAAAGCCACTCTCCCTGATGGAGGATTGGGATCTGTGGGATTAC 575
consensus_5933#2 GTGTGCAATCCGGACGCAAAGCCACTCTCCCTGATGGAGGATTGGGATCTGTGGGATTAC 586
************************************************************
consensus_5933#0 ATGGACGAAAGTGAACTGAAGGAACGGTTAAAGGACCATCCACGGCTGCTGGAAGAGATT 571
consensus_5933#1 ATGGACGAAAGTGAACTGAAGGAACGGTTAAAGGACCATCCACGGCTGCTGGAAGAGATT 635
consensus_5933#2 ATGGACGAAAGTGAACTGAAGGAACGGTTAAAGGACCATCCACGGCTGCTGGAAGAGATT 646
************************************************************
consensus_5933#0 ACCCGCAAACGAAAGCGGCGCATGCTGGAGGAGGAGGACGGTGCGACGGCTCGCGAAGAC 631
consensus_5933#1 ACCCGCAAACGAAAGCGGC----------------------------------------- 654
consensus_5933#2 AC---------------------------------------------------------- 648
**
consensus_5933#0 GACGAGCTGTGCGATGTGATGAACCGGGCGATTAAGTGTGTCCGTACGGAAACGCCCAGT 691
consensus_5933#1 ------------------------------------------------------------
consensus_5933#2 ------------------------------------------------------------
consensus_5933#0 TTGACCAGTTAAAACAGTTGGCGTGATCGGTATTTTTTGTGTGAGAAATATGCCTTTCTT 751
consensus_5933#1 ------------------------------------------------------------
consensus_5933#2 ------------------------------------------------------------
consensus_5933#0 TTAACTGCTTCCAGCAAACAATTTACATTGCTTTTTCGCATCTTAAGCTGTGTACTTTTA 811
consensus_5933#1 ------------------------------------------------------------
consensus_5933#2 ------------------------------------------------------------
consensus_5933#0 TGNGGATTAATTTTTTATTGAGTTTAAACGTCGTGTACGACGATATAGAATTTAACGAAT 871
consensus_5933#1 ------------------------------------------------------------
consensus_5933#2 ------------------------------------------------------------
consensus_5933#0 TTTCTTTCATGGGTGTAAAATTCGAAATAG 901
consensus_5933#1 ------------------------------
consensus_5933#2 ------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||