cluster # 5935

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Anopheles gambiae
cluster # 5935 cluster # 5935 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5935#0 length = 926 sequences # 3

consensus_5935#1 length = 650 sequences # 2

consensusID : consensus_5935#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 926
fasta sequence

                              [GGGAACTATTTTCTCGAATATGTTTTGCCAAATAAATTTCCTCGAAAATAACGCATCTCTTCGTCGTGGCGTGTACCCGTGGTAGGACCCGGGGGAGGACCTTAGTGTTCGAGGCGGTGCCCCCACAAATCTTGTTTCGTCATGGCATTTTGGTGATTCATTGGACGCAACATATGCGTAGCTCTACAGCCGAGAGCACAACCCACCAGGG-AAGAGAATGTATTCGTCAGACGACGGTTCGCCTCATAGCAGCCCAGCCAGTGCATAATATCTCTCCTGGGAGAAGTCATGTGATCGTGCGCCAAGTGACGAAGAATAATTATAGAAATTCTGCAAGCTGCAAGCAACTTTGATAGCGCGCAGGGCCCCGGCGGCCAAATGAGTAATGCAAATTTGGCATTCCGTGCAGGCTAAGACGATTAATCCAGTCCAGTGACTTTTGGTCACGCGTTTGATACAAAAAAAAGAAGTTATTTCTTGTAATCCATACCTTAATCAATCGACGCATTGCGAGACCCTTATCATGACGATGCATCAAAATTACGTTGTGTTGATATGGTACATCATAATGGTGGTGATACTGATATACCTGTTTGTGTTTTCCCAATAACAGCGGCCACATTATCATAACAAGATCGAAACATACCTAAGCAAATACACTTACACACACACATACACACACACACACACACACACACACTCATGAACTCGCATAATCATATGAATCATTTCCATTTTATTTATACCGACACGTATAGGAACAACGTTACAAAATGTATGTGTTTAATGTAGAACTATGTGCGAAACTAATTCGAAACGGCCTTCGAAACACCTGGTATAAGCAGCAGCGGTTGACGGAAGCTAGAGATAATGAGCCTGGTTAATAGTTGTGATTTGTTATCAATAAACTAAACAGGATAAACGAT]

[+] EMBL BX611321             [GGGAACTATTTTCTCGAATATGTTTTGCCAAATAAATTTCCTCGAAAATAACGCATCTCTTCGTCGTGGCGTGTACCCGTGGTAGGACCCGGGGGAGGACCTTAGTGTTCGAGGCGGTGCCCCCACAAATCTTGTTTCGTCATGGCATTTTGGTGATTCATTGGACGCAACATATGCGTAGCTCTACAGCCGAGAGCACAACCCACCAGGG AAGAGAATGTATTCGTCAGACGACGGTTCGCCTCATAGCAGCCCAGCCAGTGCATAATATCTCTCCTGGGAGAAGTCATGTGATCGTGCGCCAAGTGACGAAGAATAATTATAGAAATTCTGCAAGCTGCAAGCAACTTTGATAGCGCGCAGGGCCCCGGCGGCCAAATGAGTAATGCAAATTTGGCATTCCGTGCAGGCTAAGACGATTAATCCAGTCCAGTGACTTTTGGTCACGCGTTTGATACAAAAAAAAGAAGTTATTTCTTGTAATCCATACCTTAATCAATCGACGCATTGCGAGACCCTTATCATGACGATGCATCAAAATTACGTTGTGTTGATATGGTACATCATAATGGTGGTG                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BX624500             [                                                                                          GGGGGAGGACCTTAGTGTTCGAGGCGGTGCCCCCACAAATCTTGTTTCGTCATGGCATTTTGGTGATTCATTGGACGCAACATATGCGTAGCTCTACAGCCGAGAGCACAACCCACCAGGGNAAGAGAATGTATTCGTCAGACGACGGTTCGCCTCATAGCAGCCCAGCCAGTGCATAATATCTCTCCTGGGAGAAGTCATGTGATCGTGCGCCAAGTGACGAAGAATAATTATAGAAATTCTGCAAGCTGCAAGCAACTTTGATAGCGCGCAGGGCCCCGGCGGCCAAATGAGTAATGCAAATTTGGCATTCCGTGCAGGCTAAGACGATTAATCCAGTCCAGTGACTTTTGGTCACGCGTTTGATACAAAAAAAAGAAGTTATTTCTTGTAATCCATACCTTAATCAATCGACGCATTGCGAGACCCTTATCATGACGATGCATCAAAATTACGTTGTGTTGATATGGTACATCATAATGGTGGTGATACTGATATACCTGTTTGTGTTTTCCCAATAACAGCGGCCACATTATCATAACAAGATCGAAACATACCTAAGCAAATACACTTACACACACACATA                                                                                                                                                                                                                                                           ]
[+] EMBL BX617504             [                                                                                                                                                                                                                                      GACGACGGTTCGCCTCATAGCAGCCCAGCCAGTGCATAATATCTCTCCTGGGAGAAGTCATGTGATCGTGCGCCAAGTGACGAAGAATAATTATAGAAATTCTGCAAGCTGCAAGCAACTTTGATAGCGCGCAGGGCCCCGGCGGCCAAATGAGTAATGCAAATTTGGCATTCCGTGCAGGCTAAGACGATTAATCCAGTCCAGTGACTTTTGGTCACGCGTTTGATACAAAAAAAAGAAGTTATTTCTTGTAATCCATACCTTAATCAATCGACGCATTGCGAGACCCTTATCATGACGATGCATCAAAATTACGTTGTGTTGATATGGTACATCATAATGGTGGTGATACTGATATACCTGTTTGTGTTTTCCCAATAACAGCGGCCACATTATCATAACAAGATCGAAACATACCTAAGCAAATACACTTACACACACACATACACACACACACACACACACACACACTCATGAACTCGCATAATCATATGAATCATTTCCATTTTATTTATACCGACACGTATAGGAACAACGTTACAAAATGTATGTGTTTAATGTAGAACTATGTGCGAAACTAATTCGAAACGGCCTTCGAAACACCTGGTATAAGCAGCAGCGGTTGACGGAAGCTAGAGATAATGAGCCTGGTTAATAGTTGTGATTTGTTATCAATAAACTAAACAGGATAAACGAT]




>consensus_5935#0
GGGAACTATTTTCTCGAATATGTTTTGCCAAATAAATTTCCTCGAAAATAACGCATCTCT
TCGTCGTGGCGTGTACCCGTGGTAGGACCCGGGGGAGGACCTTAGTGTTCGAGGCGGTGC
CCCCACAAATCTTGTTTCGTCATGGCATTTTGGTGATTCATTGGACGCAACATATGCGTA
GCTCTACAGCCGAGAGCACAACCCACCAGGGAAGAGAATGTATTCGTCAGACGACGGTTC
GCCTCATAGCAGCCCAGCCAGTGCATAATATCTCTCCTGGGAGAAGTCATGTGATCGTGC
GCCAAGTGACGAAGAATAATTATAGAAATTCTGCAAGCTGCAAGCAACTTTGATAGCGCG
CAGGGCCCCGGCGGCCAAATGAGTAATGCAAATTTGGCATTCCGTGCAGGCTAAGACGAT
TAATCCAGTCCAGTGACTTTTGGTCACGCGTTTGATACAAAAAAAAGAAGTTATTTCTTG
TAATCCATACCTTAATCAATCGACGCATTGCGAGACCCTTATCATGACGATGCATCAAAA
TTACGTTGTGTTGATATGGTACATCATAATGGTGGTGATACTGATATACCTGTTTGTGTT
TTCCCAATAACAGCGGCCACATTATCATAACAAGATCGAAACATACCTAAGCAAATACAC
TTACACACACACATACACACACACACACACACACACACACTCATGAACTCGCATAATCAT
ATGAATCATTTCCATTTTATTTATACCGACACGTATAGGAACAACGTTACAAAATGTATG
TGTTTAATGTAGAACTATGTGCGAAACTAATTCGAAACGGCCTTCGAAACACCTGGTATA
AGCAGCAGCGGTTGACGGAAGCTAGAGATAATGAGCCTGGTTAATAGTTGTGATTTGTTA
TCAATAAACTAAACAGGATAAACGAT

consensusID : consensus_5935#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 650
fasta sequence

                              [CCGCAGTGAGACGAATCGGTTGTGCTGTGCTTAGGACGGCGTTAGAACCAGTATTGTGTTGAGATTTTCAAAGGAAAGAATAACCTTTTCCGTGGTCCTGTGTGGACATTATTTTCTTCCAATCGTGCGACGTCTCCAAACGAACCAAACCGATTCCGATTAGTGTTCGAGGCGGTGCCCCCACAAATCTTGTTTCGTCATGGCATTTTGGTGATTCATTGGACGCAACATATGCGTAGCTCTGCAGCCGAGAGCACAACCCACCAGGGAAGAGAATGTATTTGTCAGACGACGGTTCGCCTCATAGCAGCCCAGCCAGTGCATAATATCTCTCCTGGGAGAAGTCATGTGATCGTGCGCCAAGTGACGAAGAATAATTATAGAAATTCTGCAAGCTGCAAGCAACTTTGATAGCGCGCAGGGCCCCGGCGGCCAAATGAGTAATGCAAATTTGGCATTCCGTGCAGGCTAAGACGATTAATCCAGTCCAGTGACTTTTGGTCACGCGTTTGATACAAAAAAAAAGAAGTTATTTCTTGTAATCCATACCTTAATCAATCGACGCATTGCGAGACCCTTATCATGACGATGCATCAAAATTACGTTGTGTTGATATGGTACATCATAATGGTGGTGATACTGATATACCT]

[+] EMBL BM605251             [CCGCAGTGAGACGAATCGGTTGTGCTGTGCTTAGGACGGCGTTAGAACCAGTATTGTGTTGAGATTTTCAAAGGAAAGAATAACCTTTTCCGTGGTCCTGTGTGGACATTATTTTCTTCCAATCGTGCGACGTCTCCAAACGAACCAAACCGATTCCGATTAGTGTTCGAGGCGGTGCCCCCACAAATCTTGTTTCGTCATGGCATTTTGGTGATTCATTGGACGCAACATATGCGTAGCTCTGCAGCCGAGAGCACAACCCACCAGGGAAGAGAATGTATTTGTCAGACGACGGTTCGCCTCATAGCAGCCCAGCCAGTGCATAATATCTCTCCTGGGAGAAGTCATGTGATCGTGCGCCAAGTGACGAAGAATAATTATAGAAATTCTGCAAGCTGCAAGCAACTTTGATAGCGCGCAGGGCCCCGGCGGCCAAATGAGTAATGCAAATTTGGCATTCCGTGCAGGCTAAGACGATTAATCCAGTCCAGTGACTTTTGGTCACGCGTTTGATACAAAAAAAAAGAAGTTATTTCTTGTAATCCATACCTTAATCAATCGACGCATTGCGAGACCCTTATCATGACGATGCATCAAAATTACGTTGTGTT                                       ]
[+] EMBL BX622196             [                                                                  TTCAAAGGAAAGAATAACCTTTTCCGTGGTCCCGAGTGGACATTATTTTCTTCCAATCGTGCGACGTCTCCAAACGAACCAAACCGATTCCGATTAGTGTTTGAGGCGGTGCCCCCCCAAATCTTGTTTCGTCATGGCATTTTGGTGATTCATTGGACGCAACATATGCGTAGCTCTACAGCCGAGAGCACAACTCACCAGGGAAGAGAATGTATTCGTCGGACGACGGTTCGCCTCATAGCAGCCCAGCCAGTGCATAATATCTCTCCTGGGAGAAGTCATGTGATCGTGCGCCAAGTGACGAAGAATAATTATAGAAATTCTGCAAGCTGCAAGCAACTTTGATAGCGCGCAGGGCCCCGGCGGCCAAATGAGAAATGC AATTTGGCATTCCGTGCAGGCTAAGACGATTAATCCAGTCCAGTGACTTTTGGTCACGCGTTTAATAC AAAAAAAAGAAGTTATTTCTTGTAATCCATACCTTAATCAATCGACGCATTGCGAGACCCTTATCATGACGATGCATCAAAATTACGTTGTGTTGATATGGTACATCATAATGGTGGTGATACTGATATACCT]




>consensus_5935#1
CCGCAGTGAGACGAATCGGTTGTGCTGTGCTTAGGACGGCGTTAGAACCAGTATTGTGTT
GAGATTTTCAAAGGAAAGAATAACCTTTTCCGTGGTCCTGTGTGGACATTATTTTCTTCC
AATCGTGCGACGTCTCCAAACGAACCAAACCGATTCCGATTAGTGTTCGAGGCGGTGCCC
CCACAAATCTTGTTTCGTCATGGCATTTTGGTGATTCATTGGACGCAACATATGCGTAGC
TCTGCAGCCGAGAGCACAACCCACCAGGGAAGAGAATGTATTTGTCAGACGACGGTTCGC
CTCATAGCAGCCCAGCCAGTGCATAATATCTCTCCTGGGAGAAGTCATGTGATCGTGCGC
CAAGTGACGAAGAATAATTATAGAAATTCTGCAAGCTGCAAGCAACTTTGATAGCGCGCA
GGGCCCCGGCGGCCAAATGAGTAATGCAAATTTGGCATTCCGTGCAGGCTAAGACGATTA
ATCCAGTCCAGTGACTTTTGGTCACGCGTTTGATACAAAAAAAAAGAAGTTATTTCTTGT
AATCCATACCTTAATCAATCGACGCATTGCGAGACCCTTATCATGACGATGCATCAAAAT
TACGTTGTGTTGATATGGTACATCATAATGGTGGTGATACTGATATACCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5935#0      --------------------------------------------------------GGGA 4
consensus_5935#1      CCGCAGTGAGACGAATCGGTTGTGCTGTGCTTAGGACGGCGTTAGAACCAGTATTGTGTT 60
                                                                               *  

consensus_5935#0      ACTATTTTCTCGAATATGTTTTGCCAAATAAATTTCCTCGAAAATAACGCATCTCTTCGT 64
consensus_5935#1      GAGATTTTCAAAGGAAAGAATAACCTTTTCCGTGGTCCTGTGTGGACATTATTTTCTTCC 120
                         ******      * *  *  **   *   *   *  *     *    ** *  *   

consensus_5935#0      CGTGGCGTGTACCCGTGGTAGGACCCGGGGGAGGACC--TTAGTGTTCGAGGCGGTGCCC 122
consensus_5935#1      AATCGTGCGACGTCTCCAAACGAACCAAACCGATTCCGATTAGTGTTCGAGGCGGTGCCC 180
                        * * * *    *     * ** **         **  *********************

consensus_5935#0      CCACAAATCTTGTTTCGTCATGGCATTTTGGTGATTCATTGGACGCAACATATGCGTAGC 182
consensus_5935#1      CCACAAATCTTGTTTCGTCATGGCATTTTGGTGATTCATTGGACGCAACATATGCGTAGC 240
                      ************************************************************

consensus_5935#0      TCTACAGCCGAGAGCACAACCCACCAGGGAAGAGAATGTATTCGTCAGACGACGGTTCGC 242
consensus_5935#1      TCTGCAGCCGAGAGCACAACCCACCAGGGAAGAGAATGTATTTGTCAGACGACGGTTCGC 300
                      *** ************************************** *****************

consensus_5935#0      CTCATAGCAGCCCAGCCAGTGCATAATATCTCTCCTGGGAGAAGTCATGTGATCGTGCGC 302
consensus_5935#1      CTCATAGCAGCCCAGCCAGTGCATAATATCTCTCCTGGGAGAAGTCATGTGATCGTGCGC 360
                      ************************************************************

consensus_5935#0      CAAGTGACGAAGAATAATTATAGAAATTCTGCAAGCTGCAAGCAACTTTGATAGCGCGCA 362
consensus_5935#1      CAAGTGACGAAGAATAATTATAGAAATTCTGCAAGCTGCAAGCAACTTTGATAGCGCGCA 420
                      ************************************************************

consensus_5935#0      GGGCCCCGGCGGCCAAATGAGTAATGCAAATTTGGCATTCCGTGCAGGCTAAGACGATTA 422
consensus_5935#1      GGGCCCCGGCGGCCAAATGAGTAATGCAAATTTGGCATTCCGTGCAGGCTAAGACGATTA 480
                      ************************************************************

consensus_5935#0      ATCCAGTCCAGTGACTTTTGGTCACGCGTTTGATACAAAAAAAA-GAAGTTATTTCTTGT 481
consensus_5935#1      ATCCAGTCCAGTGACTTTTGGTCACGCGTTTGATACAAAAAAAAAGAAGTTATTTCTTGT 540
                      ******************************************** ***************

consensus_5935#0      AATCCATACCTTAATCAATCGACGCATTGCGAGACCCTTATCATGACGATGCATCAAAAT 541
consensus_5935#1      AATCCATACCTTAATCAATCGACGCATTGCGAGACCCTTATCATGACGATGCATCAAAAT 600
                      ************************************************************

consensus_5935#0      TACGTTGTGTTGATATGGTACATCATAATGGTGGTGATACTGATATACCTGTTTGTGTTT 601
consensus_5935#1      TACGTTGTGTTGATATGGTACATCATAATGGTGGTGATACTGATATACCT---------- 650
                      **************************************************          

consensus_5935#0      TCCCAATAACAGCGGCCACATTATCATAACAAGATCGAAACATACCTAAGCAAATACACT 661
consensus_5935#1      ------------------------------------------------------------
                                                                                  

consensus_5935#0      TACACACACACATACACACACACACACACACACACACACTCATGAACTCGCATAATCATA 721
consensus_5935#1      ------------------------------------------------------------
                                                                                  

consensus_5935#0      TGAATCATTTCCATTTTATTTATACCGACACGTATAGGAACAACGTTACAAAATGTATGT 781
consensus_5935#1      ------------------------------------------------------------
                                                                                  

consensus_5935#0      GTTTAATGTAGAACTATGTGCGAAACTAATTCGAAACGGCCTTCGAAACACCTGGTATAA 841
consensus_5935#1      ------------------------------------------------------------
                                                                                  

consensus_5935#0      GCAGCAGCGGTTGACGGAAGCTAGAGATAATGAGCCTGGTTAATAGTTGTGATTTGTTAT 901
consensus_5935#1      ------------------------------------------------------------
                                                                                  

consensus_5935#0      CAATAAACTAAACAGGATAAACGAT 926
consensus_5935#1      -------------------------