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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5938#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1161 fasta sequence
[CCGCCCACGCGTCCGCTTGCGTACGGTTCGGATCTGTTTTCGCGTACCCGGTGGCGCATGATCGACACAGTGTCGTGCGCAAACCGAGCATTTTGAAAACGGCAGAGAACCTTAGACACCTCAGTAGGCACCGAGCTTGTTTAAAGGCATCGCGTAAACATCAGCAAGGTGCAGTTTGTGAGGATAAGAGAAAGCGAATAGCGCGAAGCAATCAGTGTGCCATTTCCCCACCCCACAAAGTGCCACAAATTCGGAGACTTTTTTTTTGTTTTTGTGGGAACGTTCCTCGTCAGCAAGGCGTAAGGAATCGGCCCGAAAGCATATCAGTGTAAGGCACCGGGGGATTGTGAAAAGTGAAAATAGAACTGCGCTCGGTTGCTGATTAGTGCAGTCGCACAGCCTACTGTGACGCCATTAGTTGTTGTTGTTGCATCCACACCTATTCCAGTGGCAGGAGAAGGTGGGCCCTCCGGAGGAACATCACACCGTTCGATAGAGATTAAAGTTAGTTGCGCGTCTGACGTACGACCGCCCGGAGCCGCTAGACGTTACGCAATTTGCCTGTTAGGTGCAATCGGTTCTGTCTGTCTACGCGCCCTCCCCCAAAGCGACAAGTTCCTGCGGCTACAAGTGTTGGGTAAAGAAGGGACCCGTAATTGGTTTAATTGAATCGTTTGCATAAAACTTTCAACCGGAGTGTGTTCGCGCGTGTGTGTCTCCTGCGTTGCAGCACAGCCTACTACTTATCGCACTTTACAGTAGTGCTTGAATGCAACAGCCTGTGTGCTGGTGCCGGTTTTTTTTTGCTGAAAACGGAAACTTTTCTGCACAGAGAACATGGAAGTTTGGTTGGTGTGTTTGGGGCTGTTCCTGCGCCTGCTGAACGTGCTGCTGAAACCGATCGTCGCGTTCATCGGCGGTCCGAAGCGGAGCGCCCGCTTTCCGGAGATACGCAACGATATGCTTAACATTCCGGCGGTCGATCTGGCCGAGCGGATACGCAACAAGGAGCTTCGTTCGGAGGATGTGGTGCGCGCGTACATCGATCGCATACGCGAGGTTAACCCGCTGATCAATGCCGTGGTGGAGGAGCGATTCGAGGCCGCAATCGAGGAAGCGCGCAAAGCGGACGTACTGATCGGCGAAACGCAACCACTGTGG]
[+] EMBL BM612324 [CCGCCCACGCGTCCGCTTGCGTACGGTTCGGATCTGTTTTCGCGTACCCGGTGGCGCATGATCGACACAGTGTCGTGCGCAAACCGAGCATTTTGAAAACGGCAGAGAACCTTAGACACCTCAGTAGGCACCGAGCTTGTTTAAAGGCATCGCGTAAACATCAGCAAGGTGCAGTTTGTGAGGATAAGAGAAAGCGAATAGCGCGAAGCAATCAGTGTGCCATTTCCCCACCCCACAAAGTGCCACAAATTCGGAGACTTTTTTTTTGTTTTTGTGGGAACGTTCCTCGTCAGCAAGGCGTAAGGAATCGGCCCGAAAGCATATCAGTGTAAGGCACCGGGGGATTGTGAAAAGTGAAAATAGAACTGCGCTCGGTTGCTGATTAGTGCAGTCGCACAGCCTACTGTGACGCCATTAGTTGTTGTTGTTGCATCCACACCTATTCCAGTGGCAGGAGAAGGTGGGCCCTCCGGAGGAACATCACACCGTTCGATAGAGATTAAAGTTAGTTGCGCGTCTGACGTACGACCGCCCGGAGCCGCTAGACGTTACGCAATTTGCCTGTTAGGTGCAATCGGTTCTGTCTGTCTACGCGCCCTCCCCCAAAGCGACAAGTTCCTGCGGCTACAAGTGTTGGGTAAAGAAGGGACCCGTAATTGGTTTAATTGAATCGTTTGCATAAAACTTTCAA ]
[+] EMBL BM618496 [ ccgGTTTTCGCGTACCCGGTGGCGCATGATCGACACAGTGTCGTGCGCAAACCGAGCATTTTGAAAACGGCAGAGAACCTTAGACACCTCAGTAGGCACCGAGCTTGTTTAAAGGCATCGCGTAAACATCAGCAAGGTGCAGTTTGTGAGGATAAGAGAAAGCGAATAGCGCGAAGCAATCAGTGTGCCATTTCCCCACCCCACAAAGTGCCACAAATTCGGAGAC TTTTTTTTGTTTTTGTGGGAACGTTCCTCGTCAGCAAGGCGTAAGGAATCGGCCCGAAAGCATATCAGTGTAAGGCACCGGGGGATTGTGAAAAGTGAAAATAGAACTGCGCTCGGTTGCTGATTAGTGCAGTCGCACAGCCTACTGTGACGCCATTAGTTGTTGTTGTTGCATCCACACCTATTCCAGTGGCAGGAGAAGGTGGGCCCTCCGGAGGAACATCACACCGTTCGATAGAGATTAAAGTTAGTTGCGCGTCTGACGTACGACCGCCCGGAGCCGCTAGACGTTACGCAATTTGCCTGTTAGGTGCAATCGGTTCTGTCTGTCTACGCGCCCTCCCCCAAAGCGACAAGTTCCTGCGGCTACAAGTGTTGGGTAAAGAAGGGACCCGTAATTGGTTTAATTGAATCGTTTGCATAAAACTTTCAACCGGAGTGTGTTCGCGCGTGTGTGTCTCCTGCGTTGCAGCACAGCCTACTACTTATCGCACTTTACAGTA ]
[+] EMBL BM609209 [ ccgGACGTTACGCAATTCGCCTGTTAGGTGCAATCGGTTCTGTCTGTCCACGCG CCTCCCCCAAAGCGACAAGTTCCTGCGGCTACAAGTGTTGGGTAAAGAAGGGACCCGTAATTGGTTTAATTGAATCGTTTGCATAAAACTTTCTACCGGAGTGTGTTCGCGCGTGTGTGTCTCCTGCGTTGCAGCACAGCCTACTACTTATCGCAC TTGCAGTAGTGCTTGAATGCAACAGCCTGTGTGCTGGTGCCGGTTTTTTTTTGCTGAAAACGGAAACTTTTCTGCACAGAGAACATGGAAGTTTGGTTGGTGTGTTTGGGGCTGTTCCTGCGCCTGCTGAACGTGCTGCTGAAACCGATCGTCGCGTTCATCGGCGGTCCGAAGCGGAGCGCCCGCTTTCCGGAGATACGCAACGATATGCTTAACATTCCGGCGGTCGATCTGGCCGAGCGGATACGCAACAAGGAGCTTCGTTCGGAGGATGTGGTGCGCGCGTACATCGATCGCATACGCGAGGTTAACCCGCTGATCAATGCCGTGGTGGAGGAGCGATTCGAGGCCGCAATCGAGGAAGCGCGCAAAGCGGACGTACTGATCGGCGAAACGCAACCACTGTGG]
consensusID : consensus_5938#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 701 fasta sequence
[CCGCGTTGGCTTGCGTACGGTTCGGATCTGTTTTCGCGTACCCGGTGGCGCATGATCGACACAGTGTCGTGCGCAAACCGAGCGTTTTGAGAACGGCAGAGAACCTCAGACACCTCAGTAGGCACCGAGCTTGTTTAAAGGCATCGCGTAAACATCAGCAAGGTGCAGTTTGTGAGGATAAGAAAGCGAATAGCGCGAAGCAATCAGTGTGCCATTTCCCCACCTCTCCAAAGTGCCACAAACAGTACGGGGACTATTTTTTGTTTTTGCGGGAACGTTCCTTGCCAGCAAGGCGTAAGGAATCGGCCCGAAAGCATATCAGCGTAAGGCACCGGGGGATTGTGAAAAGTGAAAATAGAACTGCGCTCGGTTGCTGATTTTGATCGGTGACGCCATTTGTTGTTGTTGTTGCATCCACACCTATTCCTGCGGCAGGAGAAGGTGGGCCCTCCGGAGGAACATCACACCGTTCGATAGAGATTAAAGTTAGTTGCGCGTCTGACGTACGACCGCCCGGAGCCGCAATTTGCGAAAGACGTTACGCAATTTGCCTGTTAGGTGCAATCGGTTCTGTCTGTCTGTCGCGCCTCCCCCAAAGCGACAAGTTCCTGCGGCTACAAGTGTTGGGTAAAGAAGGGACCCGTAATTGGTTTAATTGAATCGTTTGCATAAAACTTTCTACCGGAGTGTGTTCGCGCGTG]
[+] EMBL BM606339 [CCGCGTTGGCTTGCGTACGGTTCGGATCTGTTTTCGCGTACCCGGTGGCGCATGATCGACACAGTGTCGTGCGCAAACCGAGCGTTTTGAGAACGGCAGAGAACCTCAGACACCTCAGTAGGCACCGAGCTTGTTTAAAGGCATCGCGTAAACATCAGCAAGGTGCAGTTTGTGAGGATAAGAAAGCGAATAGCGCGAAGCAATCAGTGTGCCATTTCCCCACCTCTCCAAAGTGCCACAAACAGTACGGGGACTATTTTTTGTTTTTGCGGGAACGTTCCTTGCCAGCAAGGCGTAAGGAATCGGCCCGAAAGCATATCAGCGTAAGGCACCGGGGGATTGTGAAAAGTGAAAATAGAACTGCGCTCGGTTGCTGATTTTGATCGGTGACGCCATTTGTTGTTGTTGTTGCATCCACACCTATTCCTGCGGCAGGAGAAGGTGGGCCCTCCGGAGGAACATCACACCGTTCGATAGAGATTAAAGTTAGTTGCGCGTCTGACGTACGACCGCCCGGAGCCGCAATTTGCGAAAGACGTTACGCAATTTGCCTGTTAGGTGCAATCGGTTCTGTCTGTCTGTCGCGCCTCCCCCAAAGCGACAAGTTCCTGCGGCTACAAGTGTTGGGTAAAGAAGGGACCCGTAATTGGTTTAATTGAATCGTTTGCATAAAACTTTCTACCGGAGTGTGTTCGCGCGTG]
consensusID : consensus_5938#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence
[CCGCGGACGCGTGGGTAGAGATTAAAGTTAGTTGCGCGTCTGACGTACGACCGCCCGGAGCCGCAATTTGCGAAAGACGTTACGCAATTTGCCTGTTAGGTGCAATCGGTTCTGTCTGTCTGTCGCGCCTCCCCCAAAGCGACAAGTTCCTGCGGCTACAAGTGTTGGGTAAAGAAGGGACCCGTAATTGGTTTAATTGAATCGTTTGCATAAAACTTTCTACCGGAGTGTGTTCGCGCGTGTGTGTCTTCTACGTTGCAGCACAGCCTACTACTTATCGCACTTACAGTAGTGTTTGAATGCAACAGCCTGTGTGCTGGTGCCGATTTTTTTGCTGAAAAACGGAAACTTTTCTGAACAGAAAACATGGAAGTTTGGTTGGTGTGTTTGGGGCTGTTCCTGCGCCTGCTGAACGTGCTGCTGAAACCGATCGTCGCGTTCATCGGCGGTCCGAAGCGGAGCGCACGCTTTCCGGAGATACGCAACGATATGCTCAACATTCCGGCGGTCGATCTGGCCGAGCGGATACGCAACAAGGAGCTTCGTTCGGGAGGATGTGGTGCGCGCGTACATCGATCGCATACGCGAGGTTAACCCGCTGATCAATGCCGTGGTGGAGGAGCGATTCGAGGC]
[+] EMBL BM588705 [CCGCGGACGCGTGGGTAGAGATTAAAGTTAGTTGCGCGTCTGACGTACGACCGCCCGGAGCCGCAATTTGCGAAAGACGTTACGCAATTTGCCTGTTAGGTGCAATCGGTTCTGTCTGTCTGTCGCGCCTCCCCCAAAGCGACAAGTTCCTGCGGCTACAAGTGTTGGGTAAAGAAGGGACCCGTAATTGGTTTAATTGAATCGTTTGCATAAAACTTTCTACCGGAGTGTGTTCGCGCGTGTGTGTCTTCTACGTTGCAGCACAGCCTACTACTTATCGCACTTACAGTAGTGTTTGAATGCAACAGCCTGTGTGCTGGTGCCGATTTTTTTGCTGAAAAACGGAAACTTTTCTGAACAGAAAACATGGAAGTTTGGTTGGTGTGTTTGGGGCTGTTCCTGCGCCTGCTGAACGTGCTGCTGAAACCGATCGTCGCGTTCATCGGCGGTCCGAAGCGGAGCGCACGCTTTCCGGAGATACGCAACGATATGCTCAACATTCCGGCGGTCGATCTGGCCGAGCGGATACGCAACAAGGAGCTTCGTTCGGGAGGATGTGGTGCGCGCGTACATCGATCGCATACGCGAGGTTAACCCGCTGATCAATGCCGTGGTGGAGGAGCGATTCGAGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5938#0 CCGCCCACGCGTCCGCTTGCGTACGGTTCGGATCTGTTTTCGCGTACCCGGTGGCGCATG 60
consensus_5938#1 ------CCGCGTTGGCTTGCGTACGGTTCGGATCTGTTTTCGCGTACCCGGTGGCGCATG 54
consensus_5938#2 ------CCGCGGACGCGTGGGTAGAGATTAAAGTTAGTTGCGCGTC-----TGACGTACG 49
**** ** ** *** * * * * ** ***** ** ** * *
consensus_5938#0 ATCGACACAGTGTCGTGCGCAAACCGAGCATTTTGAAAACGGCAGAGAACCTTAGACACC 120
consensus_5938#1 ATCGACACAGTGTCGTGCGCAAACCGAGCGTTTTGAGAACGGCAGAGAACCTCAGACACC 114
consensus_5938#2 ACCG-CCCGGAGC----CGCAATTTGCG------AAAGACGTTACGCAATTT---GCCTG 95
* ** * * * * ***** * * * *** * ** * *
consensus_5938#0 TCAGTAGGCACCGAGCTTGTTTAAAGGCATCGCGTAAACATCAGCAAGGTGCAGTTTGTG 180
consensus_5938#1 TCAGTAGGCACCGAGCTTGTTTAAAGGCATCGCGTAAACATCAGCAAGGTGCAGTTTGTG 174
consensus_5938#2 TTAGGTGCAATCGGTTCTGTCTGT--CTGTCGCGCCTCCCCCAAAGCGACA-AGTTCCTG 152
* ** * * ** *** * ***** * ** * **** **
consensus_5938#0 AGGATAAGAGAAAGCGAATAGCGCGAAGCAATCAGTGTGCCATTTCCCCACCCCAC-AAA 239
consensus_5938#1 AGGATAAG--AAAGCGAATAGCGCGAAGCAATCAGTGTGCCATTTCCCCACCTCTCCAAA 232
consensus_5938#2 CGGCTACAA-GTGTTGGGTAAA--GAAGGGACCCGTAATTGGTTTAATTGAATCGT---- 205
** ** * ** **** * * ** *** *
consensus_5938#0 GTGCCACAAA---TTCGGAGACTTTTTTTTTGTTTTTGTGGGAACGTTCCTCGTCAGCAA 296
consensus_5938#1 GTGCCACAAACAGTACGGGGACTATTTTTT-GTTTTTGCGGGAACGTTCCTTGCCAGCAA 291
consensus_5938#2 -TTGCATAAAACTTTCTACCGGAGTGTGTTCGCGCGTGTGTGTCTTCTACGTTGCAGCAC 264
* ** *** * * * * ** * ** * * * * *****
consensus_5938#0 GGCGTAAGGAATCGGCCCGAAAGCATATCAGTGTAAGGCACCGGGGGATTGTGAAA-AGT 355
consensus_5938#1 GGCGTAAGGAATCGGCCCGAAAGCATATCAGCGTAAGGCACCGGGGGATTGTGAAA-AGT 350
consensus_5938#2 AGCCTACTACTT---ATCGCACTTACAGTAGTGTTTGAATGCAACAGCCTGTGTGCTGGT 321
** ** * ** * * * ** ** * * * **** **
consensus_5938#0 GAAAATAGAACTGCGCTCGGTTGCTGATTAGTGCAGTCGCACAGCCTACTGTGACGCCAT 415
consensus_5938#1 GAAAATAGAACTGCGCTCGGTTGCTGATTT---TGATCG-----------GTGACGCCAT 396
consensus_5938#2 GCCGATTTTTTTGCTGAAAAACGGAAACTTTTCTGAACA-------------GAAAACAT 368
* ** *** * * * * ** ***
consensus_5938#0 T-AGTTGTTGTTGTTGCATCCACACCTATTCCAGTGGCAGGAGAAGGTGGGCCCTCCGGA 474
consensus_5938#1 T-TGTTGTTGTTGTTGCATCCACACCTATTCCTGCGGCAGGAGAAGGTGGGCCCTCCGGA 455
consensus_5938#2 GGAAGTTTGGTTGGTGTGTTTGGGGCTGTTCCTGCGCCTGCTGAACGTG----CTGCTGA 424
* * **** ** * ** **** * * * * *** *** ** * **
consensus_5938#0 GGAACATCACACCGTTCGATAGAGATTAAAGTTAGTTGCGCGTCTGACGTACGACCGCCC 534
consensus_5938#1 GGAACATCACACCGTTCGATAGAGATTAAAGTTAGTTGCGCGTCTGACGTACGACCGCCC 515
consensus_5938#2 AACCGATCGTCGCGTTCATCGGCGGTCCGAAGCGG----------AGCGCACG-CTTTCC 473
*** ***** * * * * * ** *** * **
consensus_5938#0 GGAGCCGCTA---------GACGTTACGCAATTTGCCTGTTAGGTGCAATCGGTTCTGTC 585
consensus_5938#1 GGAGCCGCAATTTGCGAAAGACGTTACGCAATTTGCCTGTTAGGTGCAATCGGTTCTGTC 575
consensus_5938#2 GGAGATACGC---------AACGATATGC--TCAACATTCCGG---CGGTCGATCTGGCC 519
**** * *** ** ** * * * * * *** * * *
consensus_5938#0 TGTCTACGCGCCCTCCCCCAAAGCGACAAGTTCCTGCGGCTACAAGTGTTGGGTAAAGAA 645
consensus_5938#1 TGTCTGTCGCGCCTCCCCCAAAGCGACAAGTTCCTGCGGCTACAAGTGTTGGGTAAAGAA 635
consensus_5938#2 GAGCGGATACGC--------AACAAGGAGCTTCGTTCGGGAGGATGTGGTGCGCGCGTAC 571
* * ** * *** * *** * *** ** * *
consensus_5938#0 GGGACCCGTAATTGGTTTAATTGAATCGTTTGCATAAAACTTTCAACCGGAGTGTGTTCG 705
consensus_5938#1 GGGACCCGTAATTGGTTTAATTGAATCGTTTGCATAAAACTTTCTACCGGAGTGTGTTCG 695
consensus_5938#2 ATCGATCGCA-TACGCGAGGTTAACCCGCTGATCAATGCCGTGGTGGAGGAGCGATTCGA 630
** * * * ** * ** * * * * **** * *
consensus_5938#0 CGCGTGTGTGTCTCCTGCGTTGCAGCACAGCCTACTACTTATCGCACTTTACAGTAGTGC 765
consensus_5938#1 CGCGTG------------------------------------------------------ 701
consensus_5938#2 GGC--------------------------------------------------------- 633
**
consensus_5938#0 TTGAATGCAACAGCCTGTGTGCTGGTGCCGGTTTTTTTTTGCTGAAAACGGAAACTTTTC 825
consensus_5938#1 ------------------------------------------------------------
consensus_5938#2 ------------------------------------------------------------
consensus_5938#0 TGCACAGAGAACATGGAAGTTTGGTTGGTGTGTTTGGGGCTGTTCCTGCGCCTGCTGAAC 885
consensus_5938#1 ------------------------------------------------------------
consensus_5938#2 ------------------------------------------------------------
consensus_5938#0 GTGCTGCTGAAACCGATCGTCGCGTTCATCGGCGGTCCGAAGCGGAGCGCCCGCTTTCCG 945
consensus_5938#1 ------------------------------------------------------------
consensus_5938#2 ------------------------------------------------------------
consensus_5938#0 GAGATACGCAACGATATGCTTAACATTCCGGCGGTCGATCTGGCCGAGCGGATACGCAAC 1005
consensus_5938#1 ------------------------------------------------------------
consensus_5938#2 ------------------------------------------------------------
consensus_5938#0 AAGGAGCTTCGTTCGGAGGATGTGGTGCGCGCGTACATCGATCGCATACGCGAGGTTAAC 1065
consensus_5938#1 ------------------------------------------------------------
consensus_5938#2 ------------------------------------------------------------
consensus_5938#0 CCGCTGATCAATGCCGTGGTGGAGGAGCGATTCGAGGCCGCAATCGAGGAAGCGCGCAAA 1125
consensus_5938#1 ------------------------------------------------------------
consensus_5938#2 ------------------------------------------------------------
consensus_5938#0 GCGGACGTACTGATCGGCGAAACGCAACCACTGTGG 1161
consensus_5938#1 ------------------------------------
consensus_5938#2 ------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||