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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5943#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1243 fasta sequence
[CCGCAAAGAACTCTAAGAGCCCGAGAATCGCTGTTGTGGTGTGAAAGAAAAAAAGTGTTTTATTAATTAAAACCATCTTCTCCGTGTGACAGTGGGCGAGAAAAACGTGATTCATCGAGTGCGTTCGTGCTCAACCCTCCGGACAACGCATATTCCATCTGTATCCATTCCCAAACAAACATGGTTCCAGCTGTTTATCGCGACTGTGTGGCTTATCGCACAGCGTATGAATGAATAGTCAATATTTAACACTCTTCACCAGGGCAGCGTGCGTTCCACTTCGTTCCCCCTGCATTGCTGCAACAAATCGCCCAGCCGCCACCACCATCCCTTCACGCACATTTACGCGCTGCATCCGGGTTCGTGCATTTTTGCCATTTCGTTTTCCACCCAGCCCAGCTGACGTCAGTGCGTGTCACGAAGGCGACGAGAGAAGACGCGGAGTAAAACCAGCTACCAGGCCCCTGAAAGAAAAGGGTGTGTTTATTATAAGATTACATACACACGCACAACGTGAATCAACATTCCGGGCGTGAAAAGTTCCCCCCCAACGCAAATGGGACGGTACGGTCATTGTTAGTGCAACGCAGGTCGCGGGGAGGGGAAACCCAGTCGCGATAAGAAAGTAACAACCAAACAGTGCACGTACCTCCGCCACCCCAAAAGCACCTCAATCAGCACACCCCAGTTGGGTTTTTGAATCAATCCAATTAGAGCGACGCAAAGCGCGGTCGCTTTTTTAGACGGTGTGAAGTGACTCAAAGGGAGAAGAGATAGGTGCCAGTGGGTGTGAAACTGGACGTTCCGGGAGTATAAAAATCCCCCCGTTGCTGTTAGACTGTGGAATTGTTTAAACGCTACCGTTGATAATCAAACCAAATACACAGACACCATGGAACACCACGGGACAGACTTTCATCGGAGCTCGAACTCGCTCGATTCCGATTCCAAGTCCAGCTCGCTCAACTCCAAGCACGGCATGGACACGATCGTGGCGAACGAAAATGGCTTCACCTATCTGTCCGGTGAAAACATGCAGGACCGGAAAAGCGACGTCTCGTACATCTGCCCGTACAGCGGGCCGGCCATCGGGACGCTTACCATCACCAACTATCGCCTGCACTTCCGCTCGCAGCCCGCGACGGATAAGGACCCGGTAATTGTGGTCGACTGTCCGCTGGGCGCCGTTAGCCGCATCGAGAAGGTCGGCGGAGCAAGCTCGCGCGGGGAAAACTCGTACGGT]
[+] EMBL BM577101 [CCGCAAAGAACTCTAAGAGCCCGAGAATCGCTGTTGTGGTGTGAAAGAAAAAAAGTGTTTTATTAATTAAAACCATCTTCTCCGTGTGACAGTGGGCGAGAAAAACGTGATTCATCGAGTGCGTTCGTGCTCAACCCTCCGGACAACGCATATTCCATCTGTATCCATTCCCAAACAAACATGGTTCCAGCTGTTTATCGCGACTGTGTGGCTTATCGCACAGCGTATGAATGAATAGTCAATATTTAACACTCTTCACCAGGGCAGCGTGCGTTCCACTTCGTTCCCCCTGCATTGCTGCAACAAATCGCCCAGCCGCCACCACCATCCCTTCACGCACATTTACGCGCTGCATCCGGGTTCGTGCATTTTTGCCATTTCGTTTTCCACCCAGCCCAGCTGACGTCAGTGCGTGTCACGAAGGCGACGAGAGAAGACGCGGAGTAAAACCAGCTACCAGGCCCCTGAAAGAAAAGGGTGTGTTTATTATAAGATTACATACACACGCACAACGTGAATCAACATTCCGGGCGTGAAAAGTTCCCCCCCAACGCAAATGGGACGGTACGGTCATTGTTAGTGCAACGCAGGTCGCGGGGAGGGGAAACCCAGTCGCGATAAGAAAGTAACAACCAAACAGTGCACGTACCTCCGCCACCCCAAAAGCACCTCAATCAGC ]
[+] EMBL BM613153 [ ccgCACGAAGGCCACGAGAGAAGACGCGGAGTAAAACCAGCTACCAGGCCCCTGAAAGAAAAGGGTGTGTTTATTATAAGATTACATACACACGCACAACGTGAATCAACATTCCGGGCGTGAAAAGTTCCCCCCCAACGCAAATGGGACGGTACGGTCATTGTTAGTGCAACGCAGGTCGCGGGGAGGGGAAACCCAGTCGCGATAAGAAAGTAACAACCAAACAGTGCACGTACCTCCGCCACCCCAAAAGCACCTCAATCAGCACACCCCAGTTGGGTTTTTGAATCAATCCAATTAGAGCGACGCAAAGCGCGGTCGCTTTTTTAGACGGTGTGAAGTGACTCAAAGGGAGAAGAGATAGGTGCCAGTGGGTGTGAAACTGGACGTTCCGGGAGTATAAAAATCCCCCCGTTGCTGTTAGACTGTGGAATTGTTTAAACGCTACCGTTGATAATCAAACCAAATACACAGACACCATGGAACACCACGGGACAGACTTTCATCGGAGCTCGAACTCGCTCGATTCCGATTCCAAGTCCAGCTCGCTCAACTCCAAGCACGGCATGGACACGATCGTGGCGAACGAAAATGGCTTCACCTATCTGTCCGGTGAAAA ]
[+] EMBL BM632405 [ ccGGGAAACCCAGTCGCGATAAGAAAGTAACAACCAAACAGTGCACGTACCTCCGCCACCCCAAAAGCACCTCAATCAGCACACCCCAGTTGGGGTTTTGAATCAATCCAATTAGAGCGACGCAAAGCGCGGTCGCTTTTTTAGACGGTGTGAAGTGACTCAAAGGGAGAAGAGATAGGTGCCAGTGGGTGTGAAACTGGACGTTCCGGGAGTATAAAAATCCCCCCGTTGCTGTTAGACTGTGGAATTGTTTAAACGCTACCGTTGATAATCAAACCAAATACACAGACACCATGGAACACCACGGGACAGACTTTCATCGGAGCTCGAACTCGCTCGATTCCGATTCCAAGTCCAGCTCGCTCAACTCCAAGCACGGCATGGACACGATCGTGGCGAACGAAAATGGCTTCACCTATCTGTCCGGTGAAAACATGCAGGACCGGAAAAGCGACGTCTCGTACATCTGCCCGTACAGCGGGCCGGCCATCGGGACGCTTACCATCACCAACTATCGCCTGCACTTCCGCTCGCAGCCCGCGACGGATAAGGACCCGGTAATTGTGGTCGACTGTCCGCTGGGCGCCGTTAGCCGCATCGAGAAGGTCGGCGGAGCAAGCTCGCGCGGGGAAAACTCGTACGGT]
consensusID : consensus_5943#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 677 fasta sequence
[CCGCGGACGCGTGGGCGACGCAAAGCGCGGTCGCTTTTTTAGACGGTGTGAAGTGACTCAAAGGGAGAAGAGATAGGTGCCAGTGGGTGTGAAACTGGACGTTCCGGGAGTATAAAAATCCCCCCGTTGCTGTTAGACTGTGGAATTGTTTCAACGCTACCGTTGATAATCAAACCAAATACACAGACACCATGGAACACCACGGGACAGACTTTCATCGGAGCTCGAACTCGCTCGATTCCGATTCCAAGTCCAGCTCGCTCAACTCCAAGCACGGCATGGACACGATCGTGGCGAACGAAAATGGCTTCACCTATCTGTCCGGTGAAAACATGCAGGATCGGAAAAGTGACGTCTCGTACATCTGCCCGTACAGCGGGCCGGCCATCGGGACGCTTACCATCACCAACTATCGCCTGCACTTCCGCTCGCAGCCCGCCACGGACAAGGACCCGGTAATTGTGGTCGACTGTCCGCTGGGCGCCGTTAGCCGCATCGAGAAGGTCGGCGGAGCAAGCTCGCGCGGTGAAAACTCGTACGGTATCGATATTTTCTGCAAGGACATGCGCAACCTACGGTTCGCGCACAAGCAGGAAAACCACTCCCGCCGGACGGTGTTCGAGAAGCTGCAGCTGTACGCCTTTCCGCGCGCCAACGAGGGCCAGCTGTTTGCGTTC]
[+] EMBL BM595705 [CCGCGGACGCGTGGGCGACGCAAAGCGCGGTCGCTTTTTTAGACGGTGTGAAGTGACTCAAAGGGAGAAGAGATAGGTGCCAGTGGGTGTGAAACTGGACGTTCCGGGAGTATAAAAATCCCCCCGTTGCTGTTAGACTGTGGAATTGTTTCAACGCTACCGTTGATAATCAAACCAAATACACAGACACCATGGAACACCACGGGACAGACTTTCATCGGAGCTCGAACTCGCTCGATTCCGATTCCAAGTCCAGCTCGCTCAACTCCAAGCACGGCATGGACACGATCGTGGCGAACGAAAATGGCTTCACCTATCTGTCCGGTGAAAACATGCAGGATCGGAAAAGTGACGTCTCGTACATCTGCCCGTACAGCGGGCCGGCCATCGGGACGCTTACCATCACCAACTATCGCCTGCACTTCCGCTCGCAGCCCGCCACGGACAAGGACCCGGTAATTGTGGTCGACTGTCCGCTGGGCGCCGTTAGCCGCATCGAGAAGGTCGGCGGAGCAAGCTCGCGCGGTGAAAACTCGTACGGTATCGATATTTTCTGCAAGGACATGCGCAACCTACGGTTCGCGCACAAGCAGGAAAACCACTCCCGCCGGACGGTGTTCGAGAAGCTGCAGCTGTACGCCTTTCCGCGCGCCAACGAGGGCCAGCTGTTTGCGTTC]
consensusID : consensus_5943#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 471 fasta sequence
[AGATAGGTGCCAGTGGGTGTGAAACTGGACGTTCNGGGAGNATAAAAATCCCCCCGTTGCTGTTAGACTGTGGAATTGTTTAAACGCTACCGTTGATAATCAAACCAAATACACAGACACCATGGAACACCACGGGACAGACTTTCATCGGAGCTCGAACTCGCTCGATTCCGATTCCAAGTCCAGCTCGCTCAACTCAAAGCACGGCATGGACACGATCGTGGCGAACGAAAATGGCTTCACNTATCTGTCCGGGGAAAACATGCAGGATCGTAAAAGTGACGTCTCGTACATCTGCCCGTACAGNGGGCCGGCCATCGGGACGCTGACCATCACCAACTATCGCCTGCACTTCCGTTCGCAGCCCGCCACGGACAAGGACCCGGTAATTGTGGNCGACTGTCCGCTGGGCGCCGTTAGCCGCATCGAGAAGGTCGGCGAACTGCTGGCACTGCANGCGGAGCTAATGAA]
[+] EMBL BX620309 [AGATAGGTGCCAGTGGGTGTGAAACTGGACGTTCNGGGAGNATAAAAATCCCCCCGTTGCTGTTAGACTGTGGAATTGTTTAAACGCTACCGTTGATAATCAAACCAAATACACAGACACCATGGAACACCACGGGACAGACTTTCATCGGAGCTCGAACTCGCTCGATTCCGATTCCAAGTCCAGCTCGCTCAACTCAAAGCACGGCATGGACACGATCGTGGCGAACGAAAATGGCTTCACNTATCTGTCCGGGGAAAACATGCAGGATCGTAAAAGTGACGTCTCGTACATCTGCCCGTACAGNGGGCCGGCCATCGGGACGCTGACCATCACCAACTATCGCCTGCACTTCCGTTCGCAGCCCGCCACGGACAAGGACCCGGTAATTGTGGNCGACTGTCCGCTGGGCGCCGTTAGCCGCATCGAGAAGGTCGGCGAACTGCTGGCACTGCANGCGGAGCTAATGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5943#1 ------------------------------------------------------------
consensus_5943#2 ------------------------------------------------------------
consensus_5943#0 CCGCAAAGAACTCTAAGAGCCCGAGAATCGCTGTTGTGGTGTGAAAGAAAAAAAGTGTTT 60
consensus_5943#1 ------------------------------------------------------------
consensus_5943#2 ------------------------------------------------------------
consensus_5943#0 TATTAATTAAAACCATCTTCTCCGTGTGACAGTGGGCGAGAAAAACGTGATTCATCGAGT 120
consensus_5943#1 ------------------------------------------------------------
consensus_5943#2 ------------------------------------------------------------
consensus_5943#0 GCGTTCGTGCTCAACCCTCCGGACAACGCATATTCCATCTGTATCCATTCCCAAACAAAC 180
consensus_5943#1 ------------------------------------------------------------
consensus_5943#2 ------------------------------------------------------------
consensus_5943#0 ATGGTTCCAGCTGTTTATCGCGACTGTGTGGCTTATCGCACAGCGTATGAATGAATAGTC 240
consensus_5943#1 ------------------------------------------------------------
consensus_5943#2 ------------------------------------------------------------
consensus_5943#0 AATATTTAACACTCTTCACCAGGGCAGCGTGCGTTCCACTTCGTTCCCCCTGCATTGCTG 300
consensus_5943#1 ------------------------------------------------------------
consensus_5943#2 ------------------------------------------------------------
consensus_5943#0 CAACAAATCGCCCAGCCGCCACCACCATCCCTTCACGCACATTTACGCGCTGCATCCGGG 360
consensus_5943#1 ------------------------------------------------------------
consensus_5943#2 ------------------------------------------------------------
consensus_5943#0 TTCGTGCATTTTTGCCATTTCGTTTTCCACCCAGCCCAGCTGACGTCAGTGCGTGTCACG 420
consensus_5943#1 ------------------------------------------------------------
consensus_5943#2 ------------------------------------------------------------
consensus_5943#0 AAGGCGACGAGAGAAGACGCGGAGTAAAACCAGCTACCAGGCCCCTGAAAGAAAAGGGTG 480
consensus_5943#1 ------------------------------------------------------------
consensus_5943#2 ------------------------------------------------------------
consensus_5943#0 TGTTTATTATAAGATTACATACACACGCACAACGTGAATCAACATTCCGGGCGTGAAAAG 540
consensus_5943#1 ------------------------------------------------------------
consensus_5943#2 ------------------------------------------------------------
consensus_5943#0 TTCCCCCCCAACGCAAATGGGACGGTACGGTCATTGTTAGTGCAACGCAGGTCGCGGGGA 600
consensus_5943#1 ------------------------------------------------------------
consensus_5943#2 ------------------------------------------------------------
consensus_5943#0 GGGGAAACCCAGTCGCGATAAGAAAGTAACAACCAAACAGTGCACGTACCTCCGCCACCC 660
consensus_5943#1 -----------------------------------------CCGCGGACGCGTGGGCGAC 19
consensus_5943#2 ------------------------------------------------------------
consensus_5943#0 CAAAAGCACCTCAATCAGCACACCCCAGTTGGGTTTTTGAATCAATCCAATTAGAGCGAC 720
consensus_5943#1 GCAAAGCGCGGTCGCTTTTTTAGACGGTGTGAAGTGACTCAAAGGGAGAAGAGATAGGTG 79
consensus_5943#2 ---------------------------------------------------AGATAGGTG 9
consensus_5943#0 GCAAAGCGCGGTCGCTTTTTTAGACGGTGTGAAGTGACTCAAAGGGAGAAGAGATAGGTG 780
*********
consensus_5943#1 CCAGTGGGTGTGAAACTGGACGTTCCGGGAGTATAAAAATCCCCCCGTTGCTGTTAGACT 139
consensus_5943#2 CCAGTGGGTGTGAAACTGGACGTTCNGGGAGNATAAAAATCCCCCCGTTGCTGTTAGACT 69
consensus_5943#0 CCAGTGGGTGTGAAACTGGACGTTCCGGGAGTATAAAAATCCCCCCGTTGCTGTTAGACT 840
************************* ***** ****************************
consensus_5943#1 GTGGAATTGTTTCAACGCTACCGTTGATAATCAAACCAAATACACAGACACCATGGAACA 199
consensus_5943#2 GTGGAATTGTTTAAACGCTACCGTTGATAATCAAACCAAATACACAGACACCATGGAACA 129
consensus_5943#0 GTGGAATTGTTTAAACGCTACCGTTGATAATCAAACCAAATACACAGACACCATGGAACA 900
************ ***********************************************
consensus_5943#1 CCACGGGACAGACTTTCATCGGAGCTCGAACTCGCTCGATTCCGATTCCAAGTCCAGCTC 259
consensus_5943#2 CCACGGGACAGACTTTCATCGGAGCTCGAACTCGCTCGATTCCGATTCCAAGTCCAGCTC 189
consensus_5943#0 CCACGGGACAGACTTTCATCGGAGCTCGAACTCGCTCGATTCCGATTCCAAGTCCAGCTC 960
************************************************************
consensus_5943#1 GCTCAACTCCAAGCACGGCATGGACACGATCGTGGCGAACGAAAATGGCTTCACCTATCT 319
consensus_5943#2 GCTCAACTCAAAGCACGGCATGGACACGATCGTGGCGAACGAAAATGGCTTCACNTATCT 249
consensus_5943#0 GCTCAACTCCAAGCACGGCATGGACACGATCGTGGCGAACGAAAATGGCTTCACCTATCT 1020
********* ******************************************** *****
consensus_5943#1 GTCCGGTGAAAACATGCAGGATCGGAAAAGTGACGTCTCGTACATCTGCCCGTACAGCGG 379
consensus_5943#2 GTCCGGGGAAAACATGCAGGATCGTAAAAGTGACGTCTCGTACATCTGCCCGTACAGNGG 309
consensus_5943#0 GTCCGGTGAAAACATGCAGGACCGGAAAAGCGACGTCTCGTACATCTGCCCGTACAGCGG 1080
****** ************** ** ***** ************************** **
consensus_5943#1 GCCGGCCATCGGGACGCTTACCATCACCAACTATCGCCTGCACTTCCGCTCGCAGCCCGC 439
consensus_5943#2 GCCGGCCATCGGGACGCTGACCATCACCAACTATCGCCTGCACTTCCGTTCGCAGCCCGC 369
consensus_5943#0 GCCGGCCATCGGGACGCTTACCATCACCAACTATCGCCTGCACTTCCGCTCGCAGCCCGC 1140
****************** ***************************** ***********
consensus_5943#1 CACGGACAAGGACCCGGTAATTGTGGTCGACTGTCCGCTGGGCGCCGTTAGCCGCATCGA 499
consensus_5943#2 CACGGACAAGGACCCGGTAATTGTGGNCGACTGTCCGCTGGGCGCCGTTAGCCGCATCGA 429
consensus_5943#0 GACGGATAAGGACCCGGTAATTGTGGTCGACTGTCCGCTGGGCGCCGTTAGCCGCATCGA 1200
***** ******************* *********************************
consensus_5943#1 GAAGGTCGGCGGAGCAAGCTCGCGCGGTGAAAACTCGTACGGTATCGATATTTTCTGCAA 559
consensus_5943#2 GAAGGTCGGCGAACT--GCTGGCACTGCANGCGGAGCTAATGAA---------------- 471
consensus_5943#0 GAAGGTCGGCGGAGCAAGCTCGCGCGGGGAAAACTCGTACGGT----------------- 1243
*********** * *** ** * * ** *
consensus_5943#1 GGACATGCGCAACCTACGGTTCGCGCACAAGCAGGAAAACCACTCCCGCCGGACGGTGTT 619
consensus_5943#2 ------------------------------------------------------------
consensus_5943#0 ------------------------------------------------------------
consensus_5943#1 CGAGAAGCTGCAGCTGTACGCCTTTCCGCGCGCCAACGAGGGCCAGCTGTTTGCGTTC 677
consensus_5943#2 ----------------------------------------------------------
consensus_5943#0 ----------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||