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Anopheles gambiae
cluster # 5949 cluster # 5949       Sequences # 5       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5949#0 length = 1095 sequences # 1  
consensus_5949#1 length = 969 sequences # 3  
consensus_5949#2 length = 944 sequences # 1  

consensusID : consensus_5949#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1095
fasta sequence
                              [ATGCAGATCCCCCGAGGTTAAGTTTTATGACAAATTTACGNTAAGATATCATATANTGTCATCTGTTTAAGTGGTCTCTGGGAAAGCGCACTGCATCGACAGTGCGTTTGTAAACGAATCAAAGAGTGGCAAGCAGTTTGTAAAGTTTTGTAAACTATTATTCCTCAAATGACACCACCTANCTGCTGGACAGAGTGTATATTGGAGTATCTGAAGCGCATACCACGANACGCAAGTGCTGATGATGGACGAATCGGGCTGGAATGCGCTGACGGCGAGANGAGCGCAAACAAAAGACCGACAAAGGACTAAGCGTGCAAGGAACNGAAGCCGCCCAAGATGACTGGGNACGCTACCCCTTGAACGCATGGACTGCCGCGAAAACCGGGTCGACAATGGTATCCCANCGTTAATTGGACGAATNACGGACAATTCACCNGGAGGCCNGGAAACCCATGGAGACACCCAGAAGCCTAGAATACGAACACGGGNNANGAAGNAGAANNCNGAAAGAAAAAAAAAACNGTAAACNAAAACAANTNGAACACCACAAAAATGACAAGACAGNNCANCCAGCAACACAGCCGNGCCAAAACCCGACGAAACCACTGCAGGCAGCGACNNAGAAGCAACANCCNGAGCAANACAAAAGNANCACCCGGCTGGCAGCCANCGCCGAACNGGCNNAGCAAAAGAAAAATNTNAAACCAAAACACACGCAGGCACNCACATACATCCCAACAATCCTGCACACCCTGACANCGACCACNGGGCCCAGGNACGACCCNACGGGCCCCANCCGCCCCNCCCACGNGGNCGCCCCNCCNCCNNCAAANCCCAAGGCACAGNCGNCCCCCCCGACCCNGCCGNNCNCACNCCACCGNCCCGAGANNCACCCACCACNACCNCNACCNGANGAACNNGCAGCCNGCGCAGACCACNCNCCAGCCCCGCCATCNGNCGCACNNCCCCGGCCACCNACNGGGGCACNAANCCCCGACCACCACCGCNCANCCCCCCCCNCCCGAGCGGACCGCNCCAACCCNGACGCCAGCAANCGAGCATNNCACCCGCCAACAGGGAGGCACGCNACAC]

[+] EMBL AL696031             [ATGCAGATCCCCCGAGGTTAAGTTTTATGACAAATTTACGNTAAGATATCATATANTGTCATCTGTTTAAGTGGTCTCTGGGAAAGCGCACTGCATCGACAGTGCGTTTGTAAACGAATCAAAGAGTGGCAAGCAGTTTGTAAAGTTTTGTAAACTATTATTCCTCAAATGACACCACCTANCTGCTGGACAGAGTGTATATTGGAGTATCTGAAGCGCATACCACGANACGCAAGTGCTGATGATGGACGAATCGGGCTGGAATGCGCTGACGGCGAGANGAGCGCAAACAAAAGACCGACAAAGGACTAAGCGTGCAAGGAACNGAAGCCGCCCAAGATGACTGGGNACGCTACCCCTTGAACGCATGGACTGCCGCGAAAACCGGGTCGACAATGGTATCCCANCGTTAATTGGACGAATNACGGACAATTCACCNGGAGGCCNGGAAACCCATGGAGACACCCAGAAGCCTAGAATACGAACACGGGNNANGAAGNAGAANNCNGAAAGAAAAAAAAAACNGTAAACNAAAACAANTNGAACACCACAAAAATGACAAGACAGNNCANCCAGCAACACAGCCGNGCCAAAACCCGACGAAACCACTGCAGGCAGCGACNNAGAAGCAACANCCNGAGCAANACAAAAGNANCACCCGGCTGGCAGCCANCGCCGAACNGGCNNAGCAAAAGAAAAATNTNAAACCAAAACACACGCAGGCACNCACATACATCCCAACAATCCTGCACACCCTGACANCGACCACNGGGCCCAGGNACGACCCNACGGGCCCCANCCGCCCCNCCCACGNGGNCGCCCCNCCNCCNNCAAANCCCAAGGCACAGNCGNCCCCCCCGACCCNGCCGNNCNCACNCCACCGNCCCGAGANNCACCCACCACNACCNCNACCNGANGAACNNGCAGCCNGCGCAGACCACNCNCCAGCCCCGCCATCNGNCGCACNNCCCCGGCCACCNACNGGGGCACNAANCCCCGACCACCACCGCNCANCCCCCCCCNCCCGAGCGGACCGCNCCAACCCNGACGCCAGCAANCGAGCATNNCACCCGCCAACAGGGAGGCACGCNACAC]


>consensus_5949#0 ATGCAGATCCCCCGAGGTTAAGTTTTATGACAAATTTACGNTAAGATATCATATANTGTC ATCTGTTTAAGTGGTCTCTGGGAAAGCGCACTGCATCGACAGTGCGTTTGTAAACGAATC AAAGAGTGGCAAGCAGTTTGTAAAGTTTTGTAAACTATTATTCCTCAAATGACACCACCT ANCTGCTGGACAGAGTGTATATTGGAGTATCTGAAGCGCATACCACGANACGCAAGTGCT GATGATGGACGAATCGGGCTGGAATGCGCTGACGGCGAGANGAGCGCAAACAAAAGACCG ACAAAGGACTAAGCGTGCAAGGAACNGAAGCCGCCCAAGATGACTGGGNACGCTACCCCT TGAACGCATGGACTGCCGCGAAAACCGGGTCGACAATGGTATCCCANCGTTAATTGGACG AATNACGGACAATTCACCNGGAGGCCNGGAAACCCATGGAGACACCCAGAAGCCTAGAAT ACGAACACGGGNNANGAAGNAGAANNCNGAAAGAAAAAAAAAACNGTAAACNAAAACAAN TNGAACACCACAAAAATGACAAGACAGNNCANCCAGCAACACAGCCGNGCCAAAACCCGA CGAAACCACTGCAGGCAGCGACNNAGAAGCAACANCCNGAGCAANACAAAAGNANCACCC GGCTGGCAGCCANCGCCGAACNGGCNNAGCAAAAGAAAAATNTNAAACCAAAACACACGC AGGCACNCACATACATCCCAACAATCCTGCACACCCTGACANCGACCACNGGGCCCAGGN ACGACCCNACGGGCCCCANCCGCCCCNCCCACGNGGNCGCCCCNCCNCCNNCAAANCCCA AGGCACAGNCGNCCCCCCCGACCCNGCCGNNCNCACNCCACCGNCCCGAGANNCACCCAC CACNACCNCNACCNGANGAACNNGCAGCCNGCGCAGACCACNCNCCAGCCCCGCCATCNG NCGCACNNCCCCGGCCACCNACNGGGGCACNAANCCCCGACCACCACCGCNCANCCCCCC CCNCCCGAGCGGACCGCNCCAACCCNGACGCCAGCAANCGAGCATNNCACCCGCCAACAG GGAGGCACGCNACAC



consensusID : consensus_5949#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 969
fasta sequence
                              [TGGGAAAGCGCACTGCATCGACAGGCGTTTGTAAACGAATCAAAGAGTGGCAAGCAGTTTGTAAAGTTTGTAAACTTTTTCCTCAACGACACCACCTACCTGCTGGACGAGTGTTTGGAGTATCTGAAGCGCATCCACGAGACGCAGGTGCTGATGATGGACGATTCGGGCTGGAATGCGCTGACGCAGGAGGCGCAGCAGAGCCGCCAGCGGCAGCTAGTGCAGGACGAGCGCCAGTGCCGGTCGTACCTGACGCTGGCGCGCGAAACCGTCGACATGTTCCACTACATGACGATCGACATCAAGGAGCCGTTCCTGCGCCCCGAGCTGATCGACCGGCTGAGCTCGATGCTCAACTACAACATGCACCAGCTGTGCGGACCGAAGTGTAACGATCTGCGCGTCCGCCACCCGCACAAGTACGGCTGGGAGCCGAGGCGCCTGCTGGGCCAGCTGGTCGATATCTATCTGCACCTGAGCTGTGATGAGTTTGCCAACGCACTGGCCGCTGACGAGCGCTCGTTCGAGAAGCAGTTCTTCGAGGATGCGGCGAATCGCGTGGAGCGGATCGGCATCCGCTCGCACCGCGATGTGGACGAGTTCCGCAAGCTGATCCACAAGGCGGCGGAGATCTACGTGAAGAATCAGGAGAACGCGGACGAGTTTGCGGAGGCACCGGACGATTTCAAGGACCCGCTGATGGACACACTGATGACGGATCCGGTCATCCTGCCGTCCGGCACCATCATGGACCGGGCGATCATCACGCGGCATCTGCTGAACAGCAGCACCGATCCGTTCAACCGTCAGCCCCTTACGGAAGATATGCTAAAACCGGCCACCGAACTGAAGGAACGCATCCAGCAGTGGATCAAAGAATATCGAGCTCAGAAGAAGTCCAGCTAAATTCGCTTCTATTCCTCCTTGGATAATCGTGGGCAAGTCTCCTTGCAATCTTCTTCTTCTTCT]

[+] EMBL BX622207             [TGGGAAAGCGCACTGCATCGACAGGCGTTTGTAAACGAATCAAAGAGTGGCAAGCAGTTTGTAAAGTTTGTAAACTTTTTCCTCAACGACACCACCTACCTGCTGGACGAGTGTTTGGAGTATCTGAAGCGCATCCACGAGACGCAGGTGCTGATGATGGACGATTCGGGCTGGAATGCGCTGACGCAGGAGGCGCAGCAGAGCCGCCAGCGGCAGCTAGTGCAGGACGAGCGCCAGTGCCGGTCGTACCTGACGCTGGCGCGCGAAACCGTCGACATGTTCCACTACATGACGATCGACATCAAGGAGCCGTTCCTGCGCCCCGAGCTGATCGACCGGCTGAGCTCGATGCTCAACTACAACATGCACCAGCTGTGCGGACCGAAGTGTAACGATCTGCGCGTCCGCCACCCGCACAAGTACGGCTGGGAGCCGAGGCGCCTGCTGGGCCAGCTGGTCGATATCTATCTGCACCTGAGCTGTGATGAGTTTGCCAACGCACTGGCCGCTGACGAGCGCTCGTTCGAGAAGCAGTTCTTCGAGGATGCGGCGAATCGCGTGGAGCGGATCGGCATCCGCTCGCACCGCGATGTGGACGAGTTCCGCAAGCTGATCCACAAGGCGGCGGAGATCTACGTGAAGAATCAGGAGAACGCGGACGAGTTTGCGGAGGCACCGGACGATTTCAAGGACCCGCTGATGGACACACTGATGACGGATCCGGTCATCCTGCCGTCCGGCACCATCATGGACCGGGCGATCATCACGCGGCATCTGCTG ACAGCAGCACCGATCCGTTCAACCGTCAGCCCCTTACGG                                                                                                                                                     ]
[+] EMBL BX622076             [                                                                                                                                                                                                                                                                                                                               GCCCCGAGCTGATCGATCGGCTGAGCTCGATGCTCAACTACAACATGCACCAGCTGTGCGGCCCGAAGTGTAACGATCTGCGCGTCCGCCACCCGCACAAGTACGGCTGGGAGCCGAGGCGCCTGCTGGGCCAGCTGGTCGATATCTATCTGCACCTGAGCTGTGATGAGTTTGCCAACGCACTGGCCGCCGACGAGCGCTCGTTCGAGAAGCAGTTCTTCGAGGATGCCGCGAATCGCGTGGAGCGGATCGGCATCCGCTCGCACCGCGATGTGGACGAGTTCCGCAAGCTGATCCACAAGGCGGCGGAGATCTACGTGAAGAATCAGGAGAACGCGGACGAGTTTGCGGAGGCACCGGACGATTTCAAGGACCCGCTGATGGACACACTGATGACGGATCCGGTCATCCTGCCGTCCGGCACCATCATGGACCGGGCGATCATCACGCGGCATCTGCTGAACAGCAGCACCGATCCGTTCAACCGTCAGCCCCTTACGGAAGATATGCTAAAACCGGCCACCGAACTGAAGGAACGCATCCAGCAGTGGATCAAAGAATATCGAGCTCAGAAGAAGTCCAGCTAAATTCGCTTCTATTCCTCCTTGGATAATCGTGGGCAAGTCTCCTTGCAATCTTCTTCTTCTTCT]
[+] EMBL BX612436             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TGCACCTGAGCTGTGATGAGTTTGCCAACGCACGGGCCGCTGACGAGCGCTCGTTCGAGAAGCAGTTCTTCGAGGAAGCGGCGAATCGCGGGGAGCGGATCGGCATCCGCTCGCACCGCGATGTGGACGAGTTCCGCAAGCTGAACCACAAGGCGGCGGAGATCTACGTGAAGAATCAGGAGAACGCGGACGAGTTTGCGGAGGCACCGGACGAATTCAAGGACCCGCTGATGGACACACTGATGACGGATCCGGGCATCCTGCCGTCCGGCACCATCATGGACCGGGCGATCATCACGCGGCATCGGCTGAACAGCAGCACCGATCCGTTCAACCGTCAGCCCCTTACGGAAGAAATGCTAAAACCGGCCACCGAACTGAAGGAACGCATCCAGCAGTGGATCAAAGAAAATCGAGCTCAGAAGAAGTCCAGCTAAATTCGC                                                         ]


>consensus_5949#1 TGGGAAAGCGCACTGCATCGACAGGCGTTTGTAAACGAATCAAAGAGTGGCAAGCAGTTT GTAAAGTTTGTAAACTTTTTCCTCAACGACACCACCTACCTGCTGGACGAGTGTTTGGAG TATCTGAAGCGCATCCACGAGACGCAGGTGCTGATGATGGACGATTCGGGCTGGAATGCG CTGACGCAGGAGGCGCAGCAGAGCCGCCAGCGGCAGCTAGTGCAGGACGAGCGCCAGTGC CGGTCGTACCTGACGCTGGCGCGCGAAACCGTCGACATGTTCCACTACATGACGATCGAC ATCAAGGAGCCGTTCCTGCGCCCCGAGCTGATCGACCGGCTGAGCTCGATGCTCAACTAC AACATGCACCAGCTGTGCGGACCGAAGTGTAACGATCTGCGCGTCCGCCACCCGCACAAG TACGGCTGGGAGCCGAGGCGCCTGCTGGGCCAGCTGGTCGATATCTATCTGCACCTGAGC TGTGATGAGTTTGCCAACGCACTGGCCGCTGACGAGCGCTCGTTCGAGAAGCAGTTCTTC GAGGATGCGGCGAATCGCGTGGAGCGGATCGGCATCCGCTCGCACCGCGATGTGGACGAG TTCCGCAAGCTGATCCACAAGGCGGCGGAGATCTACGTGAAGAATCAGGAGAACGCGGAC GAGTTTGCGGAGGCACCGGACGATTTCAAGGACCCGCTGATGGACACACTGATGACGGAT CCGGTCATCCTGCCGTCCGGCACCATCATGGACCGGGCGATCATCACGCGGCATCTGCTG AACAGCAGCACCGATCCGTTCAACCGTCAGCCCCTTACGGAAGATATGCTAAAACCGGCC ACCGAACTGAAGGAACGCATCCAGCAGTGGATCAAAGAATATCGAGCTCAGAAGAAGTCC AGCTAAATTCGCTTCTATTCCTCCTTGGATAATCGTGGGCAAGTCTCCTTGCAATCTTCT TCTTCTTCT



consensusID : consensus_5949#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 944
fasta sequence
                              [GCAGAAATCGGCCAGAGGTTAACACTACATGTACGATCGACATCAATGAGCGTTCCTGTGCCCCGAGCTGATCTGACCGGCTGAGCTCGATGCTCAACTACAACATGCACCAGCTGTTGCGGACCCGAAGTGTAACGATCTGTGCGTCCGCAACCGNACAAGATACGGCTGGGANGCCCGAGGCAGCCTGCTGGGCCAGACTGGTCGATATCTATCTTGCACCCTGAGACTTGTGACTGACGTTTGNCAAACAGCACTTGGGCCGCTGAACGAGACCGCCTCGTTCCGAAGGAAAGCAAGTATCNTTTCCGACGCGGATTGCTACGGCNCGGAAATCCGCGGTTGGGAAGCCGGGACTCAGNGGCATACACAGGCTTCGGCGCACCCCGGCCGGAATGTTGNGACCAAGATTTCACCGCGACAAGNCCTTGGATTCCCACAAAGGGCGGGCCGCGGAGGATACTTACCCGGTTGAGANCGAAATTACCAACGAGGNAGGAAAAACAGCCGGNGGAACAGGAAAGGATTCTTGGACAGCGGACAGAGNCGAACCCCCGGCGGAAACCGGAACTATTATCACAAAGTGNGAAGCCCCCGGCCTTGCAAATTTGGCGGCAACGACAAACCTTGCACTTTGACCANNGGATTCCCCGGGAGTCGAAATTAACCACCATTTTGTGTACGCCNCGCTGTACACCATGNGTGGCGCAGACCCCCAAATTCCCAACATTACGGGGGTAAAACCCCGNTCAAGGCCNCGGCACATCCCAATTCCCAAACAGCNCCAGNGGCAGCGCATTTACCTTTANGGCCAGTTGGGANGAAACCCAAAGNATCCAAAGGAGCAACAACCCCGCGAATCACACCGGTCGTGATCATNCAAAAACACACCGAGTTCACNNACCAAGGAGACAGCNCCNCTCTCTAAACCGGCGGGACAAACA]

[+] EMBL AL696213             [GCAGAAATCGGCCAGAGGTTAACACTACATGTACGATCGACATCAATGAGCGTTCCTGTGCCCCGAGCTGATCTGACCGGCTGAGCTCGATGCTCAACTACAACATGCACCAGCTGTTGCGGACCCGAAGTGTAACGATCTGTGCGTCCGCAACCGNACAAGATACGGCTGGGANGCCCGAGGCAGCCTGCTGGGCCAGACTGGTCGATATCTATCTTGCACCCTGAGACTTGTGACTGACGTTTGNCAAACAGCACTTGGGCCGCTGAACGAGACCGCCTCGTTCCGAAGGAAAGCAAGTATCNTTTCCGACGCGGATTGCTACGGCNCGGAAATCCGCGGTTGGGAAGCCGGGACTCAGNGGCATACACAGGCTTCGGCGCACCCCGGCCGGAATGTTGNGACCAAGATTTCACCGCGACAAGNCCTTGGATTCCCACAAAGGGCGGGCCGCGGAGGATACTTACCCGGTTGAGANCGAAATTACCAACGAGGNAGGAAAAACAGCCGGNGGAACAGGAAAGGATTCTTGGACAGCGGACAGAGNCGAACCCCCGGCGGAAACCGGAACTATTATCACAAAGTGNGAAGCCCCCGGCCTTGCAAATTTGGCGGCAACGACAAACCTTGCACTTTGACCANNGGATTCCCCGGGAGTCGAAATTAACCACCATTTTGTGTACGCCNCGCTGTACACCATGNGTGGCGCAGACCCCCAAATTCCCAACATTACGGGGGTAAAACCCCGNTCAAGGCCNCGGCACATCCCAATTCCCAAACAGCNCCAGNGGCAGCGCATTTACCTTTANGGCCAGTTGGGANGAAACCCAAAGNATCCAAAGGAGCAACAACCCCGCGAATCACACCGGTCGTGATCATNCAAAAACACACCGAGTTCACNNACCAAGGAGACAGCNCCNCTCTCTAAACCGGCGGGACAAACA]


>consensus_5949#2 GCAGAAATCGGCCAGAGGTTAACACTACATGTACGATCGACATCAATGAGCGTTCCTGTG CCCCGAGCTGATCTGACCGGCTGAGCTCGATGCTCAACTACAACATGCACCAGCTGTTGC GGACCCGAAGTGTAACGATCTGTGCGTCCGCAACCGNACAAGATACGGCTGGGANGCCCG AGGCAGCCTGCTGGGCCAGACTGGTCGATATCTATCTTGCACCCTGAGACTTGTGACTGA CGTTTGNCAAACAGCACTTGGGCCGCTGAACGAGACCGCCTCGTTCCGAAGGAAAGCAAG TATCNTTTCCGACGCGGATTGCTACGGCNCGGAAATCCGCGGTTGGGAAGCCGGGACTCA GNGGCATACACAGGCTTCGGCGCACCCCGGCCGGAATGTTGNGACCAAGATTTCACCGCG ACAAGNCCTTGGATTCCCACAAAGGGCGGGCCGCGGAGGATACTTACCCGGTTGAGANCG AAATTACCAACGAGGNAGGAAAAACAGCCGGNGGAACAGGAAAGGATTCTTGGACAGCGG ACAGAGNCGAACCCCCGGCGGAAACCGGAACTATTATCACAAAGTGNGAAGCCCCCGGCC TTGCAAATTTGGCGGCAACGACAAACCTTGCACTTTGACCANNGGATTCCCCGGGAGTCG AAATTAACCACCATTTTGTGTACGCCNCGCTGTACACCATGNGTGGCGCAGACCCCCAAA TTCCCAACATTACGGGGGTAAAACCCCGNTCAAGGCCNCGGCACATCCCAATTCCCAAAC AGCNCCAGNGGCAGCGCATTTACCTTTANGGCCAGTTGGGANGAAACCCAAAGNATCCAA AGGAGCAACAACCCCGCGAATCACACCGGTCGTGATCATNCAAAAACACACCGAGTTCAC NNACCAAGGAGACAGCNCCNCTCTCTAAACCGGCGGGACAAACA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5949#1      ------------------------------------------------------------
consensus_5949#2      ------------------------------------------------------------
consensus_5949#0      ATGCAGATCCCCCGAGGTTAAGTTTTATGACAAATTTACGNTAAGATATCATATANTGTC 60
                                                                                  

consensus_5949#1      ------------------TGGGAAAGCGCACTGCAT---CGACAG-GCGTTTGTAAACGA 38
consensus_5949#2      ------GCAGAAATCGGCCAGAGGTTAACACTACATGTACGATCG-ACATCAATGAGCGT 53
consensus_5949#0      ATCTGTTTAAGTGGTCTCTGGGAAAGCGCACTGCAT---CGACAGTGCGTTTGTAAACGA 117
                                          *       **** ***   ***  *  * *   * * ** 

consensus_5949#1      ATCAAAGAGTGGCAAGCAGTTTGTAAAGTTT-GTAAACT--TTTTCCTCAA-CGACACCA 94
consensus_5949#2      TCC--TGTGCCCCGAGCTGATCTGACCGGCT-G--AGCT--CGATGCTCAA-CTACAACA 105
consensus_5949#0      ATCAAAGAGTGGCAAGCAGTTTGTAAAGTTTTGTAAACTATTATTCCTCAAATGACACCA 177
                        *   * *   * *** * *   *  *  * *  * **     * *****   *** **

consensus_5949#1      CCTACCTGCTGGAC-GAGTGT---TTGGAGTATCTGAA---GCGCAT-CCACGAGACGCA 146
consensus_5949#2      TGCACCAGCTGT-T-GCGGAC---CCGAAGTGTAACGATCTGTGCGT-CCGC-AACCGNA 158
consensus_5949#0      CCTANCTGCTGGACAGAGTGTATATTGGAGTATCTGAA---GCGCATACCACGANACGCA 234
                         * * ****    * *        * *** *    *   * ** * ** * *  ** *

consensus_5949#1      GGTGCTGATGATGGACGATTCGGGCTGGAATGCGCTGACGC---AGGAGGCG-CAGCAGA 202
consensus_5949#2      CAAGATACGGCTGGGANGCCCGAGGCAGCCTGCTGGGCCAG---ACTGGTCGATATCTAT 215
consensus_5949#0      AGTGCTGATGATGGACGAATCGGGCTGGAATGCGCTGACGGCGAGANGAGCGCAAACAAA 294
                         * *   * ***      ** *   *  ***   * *           **  * *   

consensus_5949#1      GCCGCCAGCGGCAGCT-----AGTGCAGGACGAGCGCCAGTGCCGGTCGTACCTGACGCT 257
consensus_5949#2      CTTGCACCCTGAGACT-----TGTGACTGACGTTTGNCAA-----ACAGCACTTGG-GCC 264
consensus_5949#0      AGACCGACAAAGGACTAAGCGTGCAAGGAACNGAAGCCGCCCAAGATGACTGGGNACGCT 354
                          *         **      *      **    * *                   ** 

consensus_5949#1      GGCGCGCGAAACCGTCGACATGTTCCACTACATGACGATCGACATCAAGGAGCCG---TT 314
consensus_5949#2      GCTGAACGAGACCGC---CTCGTTCCGAAGGAAAGCAAGTATCNTTTCCGACGCGG-ATT 320
consensus_5949#0      ACCCCTTGAACGCATGGACTGCCGCGAAAACCGGGTCGACAATGGTATCCCANCGTTAAT 414
                             **   *     *     *                            **    *

consensus_5949#1      CCTGCGCCCCG-AGCTGATCGACCGGCTGAGCTCGATGCTCA--ACTACA---ACATGCA 368
consensus_5949#2      GCTACGGCNCGGAAATCCGCGGTTGG--GAAGCCGGGACTCA--GNGGCATACACAGGCT 376
consensus_5949#0      TGGACGAATNACGGACAATTCACCNGGAGGCCNGGAAACCCATGGAGACACCCAGAAGCC 474
                          **                   *  *     *   * **      **   * * ** 

consensus_5949#1      CCAG---C-TGTGCGGACCGAAGTGTAACGATCTGCGCGTCCGC---CACCCGCA-CAAG 420
consensus_5949#2      TCGG---CGCACCCCGGCCGGAATGTTGNGACCAAGATTT-------CACCGCGA-CAAG 425
consensus_5949#0      TAGAATACGAACACGGGNNANGAAGNAGAANNCNGAAAGAAAAAAAAAACNGTAAACNAA 534
                             *     * *        *       *               **    * * * 

consensus_5949#1      TACGGCTGGGAGCCGAGGCGCCTGCTGGGCCAGCTGGTCGAT--ATCTATCTGCACCTGA 478
consensus_5949#2      NCC--TTGGATTCCCA--CAAAGGGCGGGCCG--CGGAGGAT--ACTTACCCGG--TTGA 475
consensus_5949#0      AACAANTNGAACACCACAAAAATGACAAGACAGNNCANCCAGCAACACAGCCGNG-CCAA 593
                        *   * *    * *       *    * *         *   *   * * *      *

consensus_5949#1      GCTGTGATGAGTTTGC------CAACGCACTGGCCGCTGACGAGCGCTCGTTCG-AGAAG 531
consensus_5949#2      G----ANCGAAATTAC------CAACGAGGNAGGAAA-AACAGCCGGNGGAACA-GGAAA 523
consensus_5949#0      AACCCGACGAAACCACTGCAGGCAGCGACNNAGAAGC-AACANCCNGAGCAANACAAAAG 652
                              **     *      ** **     *      **   *            ** 

consensus_5949#1      CAGTTCTTCGA----GGATGCGGCGAATCGCGTGGAGCGGATCGGCATCCGCTCGCACCG 587
consensus_5949#2      GGATTCTTGGACAGCGGACAGAGNCGAACCCCCGGCGGAAACCGGAA----CTATTATCA 579
consensus_5949#0      NANCACCCGGCTGGCAGCCANCGCCGAACNGGCNNAGCAAAAGAAAAAT--NTNAAACCA 710
                           *   *      *     *   * *       *   *     *     *   * * 

consensus_5949#1      CGATGTGGAC-GAGTTCCGCAAGCTGATCCACAAGGCGGCGGAGATCTACGTGA--AG-- 642
consensus_5949#2      CAAAGTGN---GAAGCCCCCGGCCTTGCAAATTTGGCGGCAACGACAAACCTTG--CACT 634
consensus_5949#0      AAACACACGCAGGCACNCACATACATCCCAACAATCCTGCACACCCTGACANCGACCACN 770
                        *        *     * *   *      *     * **        **          

consensus_5949#1      --AATCAGGAGAACGCGGACGAGTTTGCGGAGGCACCGGACGATTTCAAGGACCCGCTGA 700
consensus_5949#2      TTGACCANNGGATTCCCCGGGAGT---CGAAATTAACC-ACCATTTTGTGTACGCCNCGC 690
consensus_5949#0      GGGCCCAGGNACGACCCNACGGGC---CCCANCCGCCCCNCCCACGNGGNCGCCCCNCCN 827
                           **        *    * *    *  *     *   *           * *     

consensus_5949#1      TGGACACACTGA-TGACGGATCCGGTCA------TCCTGCCGTCC----GGCACCATCAT 749
consensus_5949#2      TGTACACCATGNGTGGCGCAGACCCCCAAAT---TCCCAACATTACGGGGGTAAAACCCC 747
consensus_5949#0      CCNNCAAANCCCAAGGCACAGNCGNCCCCCCCGACCCNGCCGNNCNCACNCCACCGNCCC 887
                          **        * *  *  *   *        **   *           *    *  

consensus_5949#1      GGACCGGGCGATCATCACGCGGCATCTGCTGAACAG-CAGCACCGATC---CGTTCAACC 805
consensus_5949#2      GNTCAAGGCCN-CGGCACATCCCAATTCCCAAACAG-CNCCAGNGGCAGCGCATTTACCT 805
consensus_5949#0      GAGANNCACCCACCACNACCNCNACCNGANGAACNNGCAGCCNGCGCAGACCACNCNCCA 947
                      *       *   *  *       *       ***   *  *          *      * 

consensus_5949#1      GTCAGCCCCTTACGGAAGATATGCTAAAACCGGCCACCGAACTGAAGGAACGCATCCAGC 865
consensus_5949#2      TTANGGCCAGTTGGGANGAAAC-CCAAAGNATCCAAAGGAGCAACAACCCCGCGAATCAC 864
consensus_5949#0      GCCCCGCCATCNGNCGCACNNCCCC--GGCCACCNACNGGGGCACNAANCCCCGACCACC 1005
                            **               *         * *  *           * *      *

consensus_5949#1      AGTGGATCAAAGAATATCGAGCTCAGAAGAAGTCCAGCTAAATTCGCTTCTATT-CCTCC 924
consensus_5949#2      ACCGGTCGTGATCATN-CAAAAACACACCGAGTTCACNNACCAAGGAGACAGCN-CCNCT 922
consensus_5949#0      ACCGCNC---ANCCCCCCCCNCCCGAGCGGACCGCNCCAACCCNGACGCCAGCAANCGAG 1062
                      *  *      *      *     *      *   *    *         *      *   

consensus_5949#1      TTGGATAATCGTGGGCAAGTCTCCTTGCAATCTTCTTCTTCTTCT 969
consensus_5949#2      CTCTAAACCGGCGGGACAAACA----------------------- 944
consensus_5949#0      CATNNCACCCGCCAACAGGGAGGCACGCNACAC------------ 1095
                            *   *                                  




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)