These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5954#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 306 fasta sequence [CGCTATCTAGTTGGCCGTCTCCAGGCCGTCGCCATCTTAGACCGCCGTGTTCGTCCTGCCGTGATTCGTCGTCCCTGGATACGCCGTCCGTGGATCCGTCGCCCAGGAGTGCTGCCTCGGCTGGTGCTCTAAAATCCCAGCCCTT--CAAACCAACACCACACAGTGAAAAGCAGTAGACCAAACCACACCAACAAACAAACCATCCTGCAACCATCAGT-GGATGGAGTTGTGCAATAAAATTTCAATCTAATTTCCCCAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATGTGCTCGGGG] [+] EMBL CNS08IDB [CGCTATCTAGTTGGCCGTCTCCAGGCCGTCGCCATCCTAGATCGCCGTGTTCGTCCTGCCGTGATTCGTCGTCCCTGGATACGCCGTCCGTGGATCCGTCGCCCAGGAGTGCTGCCTCGGCTGGTGCTCTAAAATCCCAGTCCTTCCCAAATCAACACCACACAGTGAAAAGCAGTAGACCAAACCACACCACCAAACAAACCATCCTGCAACCATCAGT GGATGGAGTTGTGCAATAAAATTTCAATCTAATTTCCCCAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATGTGCTCGGGG] [+] EMBL BM596816 [CGCTATCTAGTTGGCCGTCTCCAGGCCGTCGCCATCTTAGACCGCCGTGTTCGTCCTGCCGTGATTCGTCGTCCCTGGATACGCCGTCCGTGGATCCGTCGCCCAGGAGTGCTGCCTCGGCTGGTGCTCTAAAATCCCAGCCCTT CAAACCAACACCACACAGTGAAAAGCAGTAGACCAAACCACACCAACAAACTAACCATCCTGCAACCATCAGTGGGATGGAGTCGTGCAATAAAAT ] [+] EMBL BM580894 [CGCTATCTAGTTGGCCGTCTCCAGGCCGTCGCCATCTTAGACCGCCGTGTTCGTCCTGCCGTGATTCGTCGTCCCTGGATACGCCGTCCGTGGATCCGTCGCCCAGGAGTGCTGCCTCGGCTGGTGCTCTAAAATCCCAGCCCTT CAAACCAACACCACACAGTGAAAAGCAGTAGACCAAACCACACCAACAAACAAACCATCCTGCAACCATCAGT GGATG ] [+] EMBL BM577877 [CGCTATCTAGTTGGCCGTCTCCAGGCCGTCGCCATCTTAGACCGCCGTGTTCGTCCTGCCGTGATTCGTCGTCCCTGGATACGCCGTCCGTGGATCCGTCGCCCAGGAGTGCTGCCTCGGCTGGTGCTCTAAAATCCCAGCCCTT CAAACCAACACCACACAGTGAAAAGCAGTAGACCAAACCACACCAACAAACAAACCATCCTGCA ] consensusID : consensus_5954#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 293 fasta sequence [CGCTATCTAGTTGGCCGTCTCCAGGCCGTCGCCATCCTAGATCGCCGTGTTCGTCCTGCCGTGATTCGTCGTCCCTGGATACGCCGTCCGTGGATCCGTCGCCCAGGAGTGCTGCCTCGGCTGGTGCTCTAAAATCCCAGTCCTTCCCAAATCAACACCACACAGTGAAAAGCAGTAGACCAAACCACACCACCAAACAAACCATCCTGCAACCATCAGTGGATGGAGTCGTGCAATAAAATTTCAATCTAATTTCCCCAGCAAAAAAAAAAACAAAAAAGGCCACATGTGCT] [+] EMBL CNS08MYX [CGCTATCTAGTTGGCCGTCTCCAGGCCGTCGCCATCCTAGATCGCCGTGTTCGTCCTGCCGTGATTCGTCGTCCCTGGATACGCCGTCCGTGGATCCGTCGCCCAGGAGTGCTGCCTCGGCTGGTGCTCTAAAATCCCAGTCCTTCCCAAATCAACACCACACAGTGAAAAGCAGTAGACCAAACCACACCACCAAACAAACCATCCTGCAACCATCAGTGGATGGAGTCGTGCAATAAAATTTCAATCTAATTTCCCCAGCAAAAAAAAAAACAAAAAAGGCCACATGTGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5954#0 CGCTATCTAGTTGGCCGTCTCCAGGCCGTCGCCATCTTAGACCGCCGTGTTCGTCCTGCC 60 consensus_5954#1 CGCTATCTAGTTGGCCGTCTCCAGGCCGTCGCCATCCTAGATCGCCGTGTTCGTCCTGCC 60 ************************************ **** ****************** consensus_5954#0 GTGATTCGTCGTCCCTGGATACGCCGTCCGTGGATCCGTCGCCCAGGAGTGCTGCCTCGG 120 consensus_5954#1 GTGATTCGTCGTCCCTGGATACGCCGTCCGTGGATCCGTCGCCCAGGAGTGCTGCCTCGG 120 ************************************************************ consensus_5954#0 CTGGTGCTCTAAAATCCCAGCCCTTC--AAACCAACACCACACAGTGAAAAGCAGTAGAC 178 consensus_5954#1 CTGGTGCTCTAAAATCCCAGTCCTTCCCAAATCAACACCACACAGTGAAAAGCAGTAGAC 180 ******************** ***** *** **************************** consensus_5954#0 CAAACCACACCAACAAACAAACCATCCTGCAACCATCAGTGGATGGAGTTGTGCAATAAA 238 consensus_5954#1 CAAACCACACCACCAAACAAACCATCCTGCAACCATCAGTGGATGGAGTCGTGCAATAAA 240 ************ ************************************ ********** consensus_5954#0 ATTTCAATCTAATTTCCCCAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATGT 298 consensus_5954#1 ATTTCAATCTAATTTCCCCAGCAAAAAAAAAAACAAAA----------AAGGCCACATGT 290 ********************************* **** ******* **** consensus_5954#0 GCTCGGGG 306 consensus_5954#1 GCT----- 293 *** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||