Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 5954 cluster # 5954       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5954#0 length = 306 sequences # 4  
consensus_5954#1 length = 293 sequences # 1  

consensusID : consensus_5954#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 306
fasta sequence
                              [CGCTATCTAGTTGGCCGTCTCCAGGCCGTCGCCATCTTAGACCGCCGTGTTCGTCCTGCCGTGATTCGTCGTCCCTGGATACGCCGTCCGTGGATCCGTCGCCCAGGAGTGCTGCCTCGGCTGGTGCTCTAAAATCCCAGCCCTT--CAAACCAACACCACACAGTGAAAAGCAGTAGACCAAACCACACCAACAAACAAACCATCCTGCAACCATCAGT-GGATGGAGTTGTGCAATAAAATTTCAATCTAATTTCCCCAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATGTGCTCGGGG]

[+] EMBL CNS08IDB             [CGCTATCTAGTTGGCCGTCTCCAGGCCGTCGCCATCCTAGATCGCCGTGTTCGTCCTGCCGTGATTCGTCGTCCCTGGATACGCCGTCCGTGGATCCGTCGCCCAGGAGTGCTGCCTCGGCTGGTGCTCTAAAATCCCAGTCCTTCCCAAATCAACACCACACAGTGAAAAGCAGTAGACCAAACCACACCACCAAACAAACCATCCTGCAACCATCAGT GGATGGAGTTGTGCAATAAAATTTCAATCTAATTTCCCCAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATGTGCTCGGGG]
[+] EMBL BM596816             [CGCTATCTAGTTGGCCGTCTCCAGGCCGTCGCCATCTTAGACCGCCGTGTTCGTCCTGCCGTGATTCGTCGTCCCTGGATACGCCGTCCGTGGATCCGTCGCCCAGGAGTGCTGCCTCGGCTGGTGCTCTAAAATCCCAGCCCTT  CAAACCAACACCACACAGTGAAAAGCAGTAGACCAAACCACACCAACAAACTAACCATCCTGCAACCATCAGTGGGATGGAGTCGTGCAATAAAAT                                                                  ]
[+] EMBL BM580894             [CGCTATCTAGTTGGCCGTCTCCAGGCCGTCGCCATCTTAGACCGCCGTGTTCGTCCTGCCGTGATTCGTCGTCCCTGGATACGCCGTCCGTGGATCCGTCGCCCAGGAGTGCTGCCTCGGCTGGTGCTCTAAAATCCCAGCCCTT  CAAACCAACACCACACAGTGAAAAGCAGTAGACCAAACCACACCAACAAACAAACCATCCTGCAACCATCAGT GGATG                                                                                   ]
[+] EMBL BM577877             [CGCTATCTAGTTGGCCGTCTCCAGGCCGTCGCCATCTTAGACCGCCGTGTTCGTCCTGCCGTGATTCGTCGTCCCTGGATACGCCGTCCGTGGATCCGTCGCCCAGGAGTGCTGCCTCGGCTGGTGCTCTAAAATCCCAGCCCTT  CAAACCAACACCACACAGTGAAAAGCAGTAGACCAAACCACACCAACAAACAAACCATCCTGCA                                                                                                  ]


>consensus_5954#0 CGCTATCTAGTTGGCCGTCTCCAGGCCGTCGCCATCTTAGACCGCCGTGTTCGTCCTGCC GTGATTCGTCGTCCCTGGATACGCCGTCCGTGGATCCGTCGCCCAGGAGTGCTGCCTCGG CTGGTGCTCTAAAATCCCAGCCCTTCAAACCAACACCACACAGTGAAAAGCAGTAGACCA AACCACACCAACAAACAAACCATCCTGCAACCATCAGTGGATGGAGTTGTGCAATAAAAT TTCAATCTAATTTCCCCAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATGTGC TCGGGG



consensusID : consensus_5954#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 293
fasta sequence
                              [CGCTATCTAGTTGGCCGTCTCCAGGCCGTCGCCATCCTAGATCGCCGTGTTCGTCCTGCCGTGATTCGTCGTCCCTGGATACGCCGTCCGTGGATCCGTCGCCCAGGAGTGCTGCCTCGGCTGGTGCTCTAAAATCCCAGTCCTTCCCAAATCAACACCACACAGTGAAAAGCAGTAGACCAAACCACACCACCAAACAAACCATCCTGCAACCATCAGTGGATGGAGTCGTGCAATAAAATTTCAATCTAATTTCCCCAGCAAAAAAAAAAACAAAAAAGGCCACATGTGCT]

[+] EMBL CNS08MYX             [CGCTATCTAGTTGGCCGTCTCCAGGCCGTCGCCATCCTAGATCGCCGTGTTCGTCCTGCCGTGATTCGTCGTCCCTGGATACGCCGTCCGTGGATCCGTCGCCCAGGAGTGCTGCCTCGGCTGGTGCTCTAAAATCCCAGTCCTTCCCAAATCAACACCACACAGTGAAAAGCAGTAGACCAAACCACACCACCAAACAAACCATCCTGCAACCATCAGTGGATGGAGTCGTGCAATAAAATTTCAATCTAATTTCCCCAGCAAAAAAAAAAACAAAAAAGGCCACATGTGCT]


>consensus_5954#1 CGCTATCTAGTTGGCCGTCTCCAGGCCGTCGCCATCCTAGATCGCCGTGTTCGTCCTGCC GTGATTCGTCGTCCCTGGATACGCCGTCCGTGGATCCGTCGCCCAGGAGTGCTGCCTCGG CTGGTGCTCTAAAATCCCAGTCCTTCCCAAATCAACACCACACAGTGAAAAGCAGTAGAC CAAACCACACCACCAAACAAACCATCCTGCAACCATCAGTGGATGGAGTCGTGCAATAAA ATTTCAATCTAATTTCCCCAGCAAAAAAAAAAACAAAAAAGGCCACATGTGCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5954#0      CGCTATCTAGTTGGCCGTCTCCAGGCCGTCGCCATCTTAGACCGCCGTGTTCGTCCTGCC 60
consensus_5954#1      CGCTATCTAGTTGGCCGTCTCCAGGCCGTCGCCATCCTAGATCGCCGTGTTCGTCCTGCC 60
                      ************************************ **** ******************

consensus_5954#0      GTGATTCGTCGTCCCTGGATACGCCGTCCGTGGATCCGTCGCCCAGGAGTGCTGCCTCGG 120
consensus_5954#1      GTGATTCGTCGTCCCTGGATACGCCGTCCGTGGATCCGTCGCCCAGGAGTGCTGCCTCGG 120
                      ************************************************************

consensus_5954#0      CTGGTGCTCTAAAATCCCAGCCCTTC--AAACCAACACCACACAGTGAAAAGCAGTAGAC 178
consensus_5954#1      CTGGTGCTCTAAAATCCCAGTCCTTCCCAAATCAACACCACACAGTGAAAAGCAGTAGAC 180
                      ******************** *****  *** ****************************

consensus_5954#0      CAAACCACACCAACAAACAAACCATCCTGCAACCATCAGTGGATGGAGTTGTGCAATAAA 238
consensus_5954#1      CAAACCACACCACCAAACAAACCATCCTGCAACCATCAGTGGATGGAGTCGTGCAATAAA 240
                      ************ ************************************ **********

consensus_5954#0      ATTTCAATCTAATTTCCCCAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATGT 298
consensus_5954#1      ATTTCAATCTAATTTCCCCAGCAAAAAAAAAAACAAAA----------AAGGCCACATGT 290
                      ********************************* ****          ******* ****

consensus_5954#0      GCTCGGGG 306
consensus_5954#1      GCT----- 293
                      ***     




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)