cluster # 5954

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Anopheles gambiae
cluster # 5954 cluster # 5954 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5954#0 length = 306 sequences # 4

consensus_5954#1 length = 293 sequences # 1

consensusID : consensus_5954#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 306
fasta sequence

                              [CGCTATCTAGTTGGCCGTCTCCAGGCCGTCGCCATCTTAGACCGCCGTGTTCGTCCTGCCGTGATTCGTCGTCCCTGGATACGCCGTCCGTGGATCCGTCGCCCAGGAGTGCTGCCTCGGCTGGTGCTCTAAAATCCCAGCCCTT--CAAACCAACACCACACAGTGAAAAGCAGTAGACCAAACCACACCAACAAACAAACCATCCTGCAACCATCAGT-GGATGGAGTTGTGCAATAAAATTTCAATCTAATTTCCCCAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATGTGCTCGGGG]

[+] EMBL CNS08IDB             [CGCTATCTAGTTGGCCGTCTCCAGGCCGTCGCCATCCTAGATCGCCGTGTTCGTCCTGCCGTGATTCGTCGTCCCTGGATACGCCGTCCGTGGATCCGTCGCCCAGGAGTGCTGCCTCGGCTGGTGCTCTAAAATCCCAGTCCTTCCCAAATCAACACCACACAGTGAAAAGCAGTAGACCAAACCACACCACCAAACAAACCATCCTGCAACCATCAGT GGATGGAGTTGTGCAATAAAATTTCAATCTAATTTCCCCAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATGTGCTCGGGG]
[+] EMBL BM596816             [CGCTATCTAGTTGGCCGTCTCCAGGCCGTCGCCATCTTAGACCGCCGTGTTCGTCCTGCCGTGATTCGTCGTCCCTGGATACGCCGTCCGTGGATCCGTCGCCCAGGAGTGCTGCCTCGGCTGGTGCTCTAAAATCCCAGCCCTT  CAAACCAACACCACACAGTGAAAAGCAGTAGACCAAACCACACCAACAAACTAACCATCCTGCAACCATCAGTGGGATGGAGTCGTGCAATAAAAT                                                                  ]
[+] EMBL BM580894             [CGCTATCTAGTTGGCCGTCTCCAGGCCGTCGCCATCTTAGACCGCCGTGTTCGTCCTGCCGTGATTCGTCGTCCCTGGATACGCCGTCCGTGGATCCGTCGCCCAGGAGTGCTGCCTCGGCTGGTGCTCTAAAATCCCAGCCCTT  CAAACCAACACCACACAGTGAAAAGCAGTAGACCAAACCACACCAACAAACAAACCATCCTGCAACCATCAGT GGATG                                                                                   ]
[+] EMBL BM577877             [CGCTATCTAGTTGGCCGTCTCCAGGCCGTCGCCATCTTAGACCGCCGTGTTCGTCCTGCCGTGATTCGTCGTCCCTGGATACGCCGTCCGTGGATCCGTCGCCCAGGAGTGCTGCCTCGGCTGGTGCTCTAAAATCCCAGCCCTT  CAAACCAACACCACACAGTGAAAAGCAGTAGACCAAACCACACCAACAAACAAACCATCCTGCA                                                                                                  ]




>consensus_5954#0
CGCTATCTAGTTGGCCGTCTCCAGGCCGTCGCCATCTTAGACCGCCGTGTTCGTCCTGCC
GTGATTCGTCGTCCCTGGATACGCCGTCCGTGGATCCGTCGCCCAGGAGTGCTGCCTCGG
CTGGTGCTCTAAAATCCCAGCCCTTCAAACCAACACCACACAGTGAAAAGCAGTAGACCA
AACCACACCAACAAACAAACCATCCTGCAACCATCAGTGGATGGAGTTGTGCAATAAAAT
TTCAATCTAATTTCCCCAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATGTGC
TCGGGG

consensusID : consensus_5954#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 293
fasta sequence

                              [CGCTATCTAGTTGGCCGTCTCCAGGCCGTCGCCATCCTAGATCGCCGTGTTCGTCCTGCCGTGATTCGTCGTCCCTGGATACGCCGTCCGTGGATCCGTCGCCCAGGAGTGCTGCCTCGGCTGGTGCTCTAAAATCCCAGTCCTTCCCAAATCAACACCACACAGTGAAAAGCAGTAGACCAAACCACACCACCAAACAAACCATCCTGCAACCATCAGTGGATGGAGTCGTGCAATAAAATTTCAATCTAATTTCCCCAGCAAAAAAAAAAACAAAAAAGGCCACATGTGCT]

[+] EMBL CNS08MYX             [CGCTATCTAGTTGGCCGTCTCCAGGCCGTCGCCATCCTAGATCGCCGTGTTCGTCCTGCCGTGATTCGTCGTCCCTGGATACGCCGTCCGTGGATCCGTCGCCCAGGAGTGCTGCCTCGGCTGGTGCTCTAAAATCCCAGTCCTTCCCAAATCAACACCACACAGTGAAAAGCAGTAGACCAAACCACACCACCAAACAAACCATCCTGCAACCATCAGTGGATGGAGTCGTGCAATAAAATTTCAATCTAATTTCCCCAGCAAAAAAAAAAACAAAAAAGGCCACATGTGCT]




>consensus_5954#1
CGCTATCTAGTTGGCCGTCTCCAGGCCGTCGCCATCCTAGATCGCCGTGTTCGTCCTGCC
GTGATTCGTCGTCCCTGGATACGCCGTCCGTGGATCCGTCGCCCAGGAGTGCTGCCTCGG
CTGGTGCTCTAAAATCCCAGTCCTTCCCAAATCAACACCACACAGTGAAAAGCAGTAGAC
CAAACCACACCACCAAACAAACCATCCTGCAACCATCAGTGGATGGAGTCGTGCAATAAA
ATTTCAATCTAATTTCCCCAGCAAAAAAAAAAACAAAAAAGGCCACATGTGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5954#0      CGCTATCTAGTTGGCCGTCTCCAGGCCGTCGCCATCTTAGACCGCCGTGTTCGTCCTGCC 60
consensus_5954#1      CGCTATCTAGTTGGCCGTCTCCAGGCCGTCGCCATCCTAGATCGCCGTGTTCGTCCTGCC 60
                      ************************************ **** ******************

consensus_5954#0      GTGATTCGTCGTCCCTGGATACGCCGTCCGTGGATCCGTCGCCCAGGAGTGCTGCCTCGG 120
consensus_5954#1      GTGATTCGTCGTCCCTGGATACGCCGTCCGTGGATCCGTCGCCCAGGAGTGCTGCCTCGG 120
                      ************************************************************

consensus_5954#0      CTGGTGCTCTAAAATCCCAGCCCTTC--AAACCAACACCACACAGTGAAAAGCAGTAGAC 178
consensus_5954#1      CTGGTGCTCTAAAATCCCAGTCCTTCCCAAATCAACACCACACAGTGAAAAGCAGTAGAC 180
                      ******************** *****  *** ****************************

consensus_5954#0      CAAACCACACCAACAAACAAACCATCCTGCAACCATCAGTGGATGGAGTTGTGCAATAAA 238
consensus_5954#1      CAAACCACACCACCAAACAAACCATCCTGCAACCATCAGTGGATGGAGTCGTGCAATAAA 240
                      ************ ************************************ **********

consensus_5954#0      ATTTCAATCTAATTTCCCCAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATGT 298
consensus_5954#1      ATTTCAATCTAATTTCCCCAGCAAAAAAAAAAACAAAA----------AAGGCCACATGT 290
                      ********************************* ****          ******* ****

consensus_5954#0      GCTCGGGG 306
consensus_5954#1      GCT----- 293
                      ***