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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5956#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1583 fasta sequence
[CCGCCCACGCGTCCGGGCACTTATAATGCAAATGGAACGAAAGCAAGAGTCCTCCAACGGTACGGTACTACGCAACATCCAGCAACTGCTCAGCCAACTCGTCGACGCTGAACCCAACTCTAGGTCCCCGTCGGCCACATCGATACGGTCTCAGTCGGAGGATGGTGCCTCACCGACAACACCACCAACTCCCACTGGCCAGAAGGCTAACGCCAAAGCAACCGCTTCCAAAACTAAAACCGAAAGTAAAAAGAAATCCACCAGCACCACATCGTCCCCCACGGCCGATTCCAACGGTCGGCGGCCGTCGGTCACGCGCAAAAAATCGATCGGCGGTGTGTTTGGCCCGGTACAAACCAATACGGTCAAGAACATGCAGAAAGAGTTCCTCAACAAGGCGAAGGAATCGCCCAAACCGAGCACATCCAAGGTTGCTCCCAAGCCGGCCAAGCTCGTTCAGCCCAAGGCGTTTACCGCTCGCTCATCGACTACACCGACTGCCTCAACCAGCAAGGCATCCACCCCGGCGTCGGAGGATGCGAGCACGTCGGCCAGATCCACGCCCGGACTCAACGATGCGAACGAACCACAGCCGGGCAGCTCGCGCGACACGACCTACATGTGCGAGAAGTTGATGAAGAAAAAGTACCGCGAAACGTGCTTCAGCGATGAGTACCAAACGACTGACGATGAGGACGAAAGCCACATGACGGTCACGGAAAGCGAGCGCACCATTATCAAGAGCCTCGTGAAACCGTACGAACCTAACAATGAGCCACCAGAAGTGCAAGCAAAACAGTTGATGGAAGATGGTCTTGTGCAAACGCTCGCCCAAGCAGAGCTTGCGGTGCAGTTGATCGAGTTGCGGTACGCCAAAGACAACGCCATCTGGGCCGCAACGCAATGTCACACGATCGACGATGCGAAAGATCTGCTGCAAAAGGAGTGCGAGCTTTGTCTGGGTGTATTCCCAATGAACGAGATCATCTCGATGCTCAAATGTACTCACACCTGCTGCTTTGAGTGCGCCAAGGAGTACTTCACACAGGAGATTACCAACCGCTCCATCACGAACTGTAACTGCCCGTACTGTAAGGAGCCTGATCTAAATGGCACCTGAAGTTACGGGAAGACGACGTGCTGGAGTACTTCTCCAATCTGGACATTC-TCTGAAGAACATCGTCGACGAGGAGGTGCACGATCTGTTCCAGCGTAAGATCCGCGATCGGACACTCACCAAGGATCCAAACTTCAAGTGGTGCGTCCATTGCTCGAGTGGATTCTTTGCCCGTCCGAAGCAGCGACGACTAGTCTGCCCGGATTGTGGCTCAATCACCTGTGCCTCGTGTCGTAAGGCGTGGGAAGCTCAACATGAGGGACTAACATGCGAGAAGTTTGCCGAGTGGAAGGAAGCTAACGATCCCGAACTGCAGGCCGAAGGTGTCCAGCGTCATCTGCAAACACACGGTATCAGCTGTCCCAACTGCAAGTTCCGGTACTCCCTCGCACGTGGCGGNTGTATGCACTTTACCTGTACGCAGTGCAAGTTTGAGTTCTGNTACNGCTGTAACAAGCCGTTTATG]
[+] EMBL BM655666 [CCGCCCACGCGTCCGGGCACTTATAATGCAAATGGAACGAAAGCAAGAGTCCTCCAACGGTACGGTACTACGCAACATCCAGCAACTGCTCAGCCAACTCGTCGACGCTGAACCCAACTCTAGGTCCCCGTCGGCCACATCGATACGGTCTCAGTCGGAGGATGGTGCCTCACCGACAACACCACCAACTCCCACTGGCCAGAAGGCTAACGCCAAAGCAACCGCTTCCAAAACTAAAACCGAAAGTAAAAAGAAATCCACCAGCACCACATCGTCCCCCACGGCCGATTCCAACGGTCGGCGGCCGTCGGTCACGCGCAAAAAATCGATCGGCGGTGTGTTTGGCCCGGTACAAACCAATACGGTCAAGAACATGCAGAAAGAGTTCCTCAACAAGGCGAAGGAATCGCCCAAACCGAGCACATCCAAGGTTGCTCCCAAGCCGGCCAAGCTCGTTCAGCCCAAGGCGTTTACCGCTCGCTCATCGACTACACCGACTGCCTCAACCAGCAAGGCATCCACCCCGGCGTCGGAGGATGCGAGCACGTCGGCCAGATCCACGCCCGGACTCAACGATGCGAACGAACCACAGCCGGGCAGCTCGCGCGACACGACCTACATGTGCGAGAAGTTGATGAAGAAAAAGTACCGCGAAACGTGCTTCAGCGATGAGTACCAAACGACTGACGAT ]
[+] EMBL BM642224 [ ccgCCAAGGTTGCTCCCAAGCCGGCCAAGCTCGTTCAGCCCAAGGCGTTTACCGCTCGCTCATCGACTACACCGACTGCCTCAACCAGCAAGGCATCCACCCCGGCGTCGGAGGATGCGAGCACGTCGGCCAGATCCACGCCCGGACTCAACGATGCGAACGAACCACAGCCGGGCAGCTCGCGCGACACGACCTACATGTGCGAGAAGTTGATGAAGAAAAAGTACCGCGAAACGTGCTTCAGCGATGAGTACCAAACGACTGACGATGAGGACGAAAGCCACATGACGGTCACGGAAAGCGAGCGCACCATTATCAAGAGCCTCGTGAAACCGTACGAACCTAACAATGAGCCACCAGAAGTGCAAGCAAAACAGTTGATGGAAGATGGTCTTGTGCAAACGCTCGCCCAAGCAGAGCTTGCGGTGCAGTTGATCGAGTTGCGGTACGCCAAAGACAACGCCATCTGGGCCGCAACGCAATGTCACACGATCG ]
[+] EMBL BM636498 [ ccgAGCTCGCGCGACACGACCTACATGTGCGAGAAGTTGATGAAGAAAAAGTACCGCGAAACGTGCTTCAGCGATGAGTACCAAACGACTGACGATGAGGACGAAAGCCACATGACGGTCACGGAAAGCGAGCGCACCATTATCAAGAGCCTCGTGAAACCGTACGAACCTAACAATGAGCCACCAGAAGTGCAAGCAAAACAGTTGATGGAAGATGGTCTTGTGCAAACGCTCGCCCAAGCAGAGCTTGCGGTGCAGTTGATCGAGTTGCGGTACGCCAAAGACAACGCCATCTGGGCCGCAACGCAATGTCACACGATCGACGATGCGAAAGATCTGCTGCAAAAGGAGTGCGAGCTTTGTCTGGGTGTATTCCCAATGAACGAGATCATCTCGATGCTCAAATGTACTCACACCTGCTGCTTTGAGTGCGCCAAGGAGTACTTCACACAGGAGATTACCAACCGCTCCATCACGAACTGTAACTGCCCGTACTGTAAGGAGCCTGATCTAAATGGCACCTGAAGTTACGGGAAGACGACGTGCTGGAGTACTTCTCCAATCTGGACATTC TCTGAAGAACATCGTCGACGAGGAGGTGCAC ]
[+] EMBL BX627972 [ CGCCATCTGGGCCGCAACGCAATGTCACACGATCGACGATGCGAAAGATCTGCTGCAAAAGGAGTGCGAGCTTTGTCTGGGTGTATTCCCAATGAACGAGATCATCTCGATGCTCAAATGTACTCACACCTGCTGCTTTGAGTGCGCCAAGGAGTACTTCACACAGGAGATTACCAACCGCTCCATCACGAACTGTAACTGCCCGTACTGTAAGGAGCCTGATCTAAATGG ACCTGAAGTTAC GGAAGACGACGTGCTGGAGTACTTCTCCAATCTGGACATTCTTCTGAAGAACATCGTCGACGAGGAGGTGCACGATCTGTTCCAGCGTAAGATCCGCGATCGGACACTCACCAAGGATCCAAACTTCAAGTGGTGCGTCCATTGCTCGAGTGGATTCTTTGCCCGTCCGAAGCAGCGACGACTAGTCTGCCCGGATTGTGGCTCAATCACCTGTGCCTCGTGTCGTAAGGCGTGGGAAGCTCAACATGAGGGACTAACATGCGAGAAGTTTGCCGAGTGGAAGGAAGCTAACGATCCCGAACTGCAGGCCGAAGGTGTCCAGCGTCATCTGCAAACACACGGTATCAGCTGTCCCAACTGCAAGTTCCGGTACTCCCTCGCACGTGGCGGNTGTATGCACTTTACCTGTACGCAGTGCAAGTTTGAGTTCTGNTACNGCTGTAACAAGCCGTTTATG]
consensusID : consensus_5956#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 553 fasta sequence
[CCCGTGACGGACGGTGACGTTCAATCACTACCACTGAACAACAACCACCAGAACCAAACGCAAATAATTTACCTAATGGAAATGCTGCTAGCGGTCACAGGACACTATCACGTGCCTCCTCTGAGGAGCCTTCATCTAGCTTCGTTGAGATACAACCATCGCAGGTCATCATTCACACACCTCAAACGGAAACGCAACCGCAAGTCGTTCCGCCCGAAGCTCCACCGCGTACCACAAACATCTACCAGAATGTGGACCTTCATCCTTCGGCTTCATCCATCTCCCCCACTGCTACTACCATTACCACCACCTCCACCACCACTACCTCCACTACTACCCCCATGAAGAGCCCACCCACTCGATCAAAGTCGAAAGCTCCCAAACTAACCGTTAAAGTTACAAACGCTGCTTCTTCGCAGTCGGAGGATGGTGCCTCACCGACAACACCACCAACTCCCACTGGCCAGAAGGCTAACGCCAAAGCAACCGCTTCCAAAACTAAAACCGAAAGTAAAAAGAAATCCTCCCCTTCTTCTTCTAGACAGAACAAATA]
[+] EMBL BX613371 [CCCGTGACGGACGGTGACGTTCAATCACTACCACTGAACAACAACCACCAGAACCAAACGCAAATAATTTACCTAATGGAAATGCTGCTAGCGGTCACAGGACACTATCACGTGCCTCCTCTGAGGAGCCTTCATCTAGCTTCGTTGAGATACAACCATCGCAGGTCATCATTCACACACCTCAAACGGAAACGCAACCGCAAGTCGTTCCGCCCGAAGCTCCACCGCGTACCACAAACATCTACCAGAATGTGGACCTTCATCCTTCGGCTTCATCCATCTCCCCCACTGCTACTACCATTACCACCACCTCCACCACCACTACCTCCACTACTACCCCCATGAAGAGCCCACCCACTCGATCAAAGTCGAAAGCTCCCAAACTAACCGTTAAAGTTACAAACGCTGCTTCTTCGCAGTCGGAGGATGGTGCCTCACCGACAACACCACCAACTCCCACTGGCCAGAAGGCTAACGCCAAAGCAACCGCTTCCAAAACTAAAACCGAAAGTAAAAAGAAATCCTCCCCTTCTTCTTCTAGACAGAACAAATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5956#0 CCGCCCACGCGTCCGGGCACTTATAATGCAAATGGAACGAAAGCAAGAGTCCTCCAACGG 60
consensus_5956#1 ------------------------------------------------------------
consensus_5956#0 TACGGTACTACGCAACATCCAGCAACTGCTCAGCCAACTCGTCGACGCTGAACCCAACTC 120
consensus_5956#1 ------------------------------------------------------------
consensus_5956#0 TAGGTCCCCGTCGGCCACATCGATACGGTCTCAGTCGGAGGATGGTGCCTCACCGACAAC 180
consensus_5956#1 ------------------------------CCCGT-GACGGACGGTGACGTTCAATCACT 29
* ** * *** **** * * **
consensus_5956#0 ACCACCAACTCCCACTGGCCAGAAGGCTAACGCCAAAGCAACCGCTTCCAAAACTAAAAC 240
consensus_5956#1 ACCACTGAACAACAACCACCAGAAC-CAAACGCAAATAATTTACCTAATGGAAATGCTGC 88
***** * ** ****** * ***** ** ** ** * *
consensus_5956#0 CGAAAGTAAAAAGAAATCCACCAGCACCACATCGTCCCCCACGGCCGATTCCAACGGTCG 300
consensus_5956#1 TAGCGGTCACAGGA-------CACTATCACGTGCCTCCTCTGAGGAGCCTTCATCTAGCT 141
** * * ** ** * *** * ** * * * * ** * *
consensus_5956#0 GCGGCCGTCGGTCACGCGCAAAAAATCGATCGGCGGTGTGTTTGGCCCGGTACAAACCAA 360
consensus_5956#1 TCG-TTGAGATACAACCATCGCAGGTC-ATCATTCACACACCTCAAACGG---AAACGCA 196
** * ** * * ** *** * *** **** *
consensus_5956#0 TACGGTCAAGAACATGCAGAAAGAGTTCCTCAACAAGGCGAAGGAATCGCCCAAACCGAG 420
consensus_5956#1 ACCG--CAAGTCGTTCCGCCCGAAGCTCCACCGCGTACCACAAACATCTACCAGAATGTG 254
** **** * * ** *** * * * * *** *** * * *
consensus_5956#0 CACATCCAAGGTTGCTCCCAAGCCGGCCAAGCTCGTTCAGCCCAAGGCGTTTACCGCTCG 480
consensus_5956#1 GACCTTCATCCTTCGGCTTCATCCATCTCC-CCCACTGCTACTACCATTACCACCACCTC 313
** * ** ** * * ** * * * * * * *** *
consensus_5956#0 CTCATCGACTACACCGACTGCCTCAACCAGCAAGGCATCCACCCCGGCGTCGGAGGATGC 540
consensus_5956#1 CACCACCACTACCTCCACTACTACCCCCA-TGAAGAGCCCACCCACTCGATCAAAGTCGA 372
* * * ***** * *** * * *** * * ****** ** * * *
consensus_5956#0 GAGCACGTCGGCCAGATCCACGCCCGGACTCAACGATGCGAACGAACCACAGCCGGGCAG 600
consensus_5956#1 AAGCTC-----CCAAACTAACCGTTAAAGTTACAAACGCTGCTTCTTCGCAGTCGGA-GG 426
*** * *** * ** * * * * ** * *** *** *
consensus_5956#0 CTCGCGCGACACGACCTACATGTGCGAGAAGTTGATGAAGAAAAAG-TACCGCGAAACGT 659
consensus_5956#1 ATGGTGCCTCACCGACAACAC-CACCAACTCCCACTGGCCAGAAGGCTAACGCCAAA--- 482
* * ** *** * *** * * ** * ** * ** *** ***
consensus_5956#0 GCTTCAGCGATGAGTACCAAACGACTGACGATGAGGACGAAAGCCACATGACGGTCACGG 719
consensus_5956#1 GCAACCGCTTCCAAAACTAAA--ACCGAAAGTAAAAA-GAAATCCTCCCCTTCTTCTTCT 539
** * ** * ** *** ** ** * * * **** ** * **
consensus_5956#0 AAAGCGAGCGCACCATTATCAAGAGCCTCGTGAAACCGTACGAACCTAACAATGAGCCAC 779
consensus_5956#1 AGACAGAACAAATA---------------------------------------------- 553
* * ** * *
consensus_5956#0 CAGAAGTGCAAGCAAAACAGTTGATGGAAGATGGTCTTGTGCAAACGCTCGCCCAAGCAG 839
consensus_5956#1 ------------------------------------------------------------
consensus_5956#0 AGCTTGCGGTGCAGTTGATCGAGTTGCGGTACGCCAAAGACAACGCCATCTGGGCCGCAA 899
consensus_5956#1 ------------------------------------------------------------
consensus_5956#0 CGCAATGTCACACGATCGACGATGCGAAAGATCTGCTGCAAAAGGAGTGCGAGCTTTGTC 959
consensus_5956#1 ------------------------------------------------------------
consensus_5956#0 TGGGTGTATTCCCAATGAACGAGATCATCTCGATGCTCAAATGTACTCACACCTGCTGCT 1019
consensus_5956#1 ------------------------------------------------------------
consensus_5956#0 TTGAGTGCGCCAAGGAGTACTTCACACAGGAGATTACCAACCGCTCCATCACGAACTGTA 1079
consensus_5956#1 ------------------------------------------------------------
consensus_5956#0 ACTGCCCGTACTGTAAGGAGCCTGATCTAAATGGCACCTGAAGTTACGGGAAGACGACGT 1139
consensus_5956#1 ------------------------------------------------------------
consensus_5956#0 GCTGGAGTACTTCTCCAATCTGGACATTCTCTGAAGAACATCGTCGACGAGGAGGTGCAC 1199
consensus_5956#1 ------------------------------------------------------------
consensus_5956#0 GATCTGTTCCAGCGTAAGATCCGCGATCGGACACTCACCAAGGATCCAAACTTCAAGTGG 1259
consensus_5956#1 ------------------------------------------------------------
consensus_5956#0 TGCGTCCATTGCTCGAGTGGATTCTTTGCCCGTCCGAAGCAGCGACGACTAGTCTGCCCG 1319
consensus_5956#1 ------------------------------------------------------------
consensus_5956#0 GATTGTGGCTCAATCACCTGTGCCTCGTGTCGTAAGGCGTGGGAAGCTCAACATGAGGGA 1379
consensus_5956#1 ------------------------------------------------------------
consensus_5956#0 CTAACATGCGAGAAGTTTGCCGAGTGGAAGGAAGCTAACGATCCCGAACTGCAGGCCGAA 1439
consensus_5956#1 ------------------------------------------------------------
consensus_5956#0 GGTGTCCAGCGTCATCTGCAAACACACGGTATCAGCTGTCCCAACTGCAAGTTCCGGTAC 1499
consensus_5956#1 ------------------------------------------------------------
consensus_5956#0 TCCCTCGCACGTGGCGGNTGTATGCACTTTACCTGTACGCAGTGCAAGTTTGAGTTCTGN 1559
consensus_5956#1 ------------------------------------------------------------
consensus_5956#0 TACNGCTGTAACAAGCCGTTTATG 1583
consensus_5956#1 ------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||