cluster # 5960

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Anopheles gambiae
cluster # 5960 cluster # 5960 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5960#0 length = 783 sequences # 4

consensus_5960#1 length = 622 sequences # 1

consensusID : consensus_5960#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 783
fasta sequence

                              [CCGCGGACGCGTGGGCGGACGCGTGGGTGCCTTGGTGCGTGACGAATATGTGCGGAGTGTTTTTCCTTCCAGCGAATCATCCACACCCTTTAGTGGCAACTCGCTAGCCATGAAATAATCGTACCGCTGCAATCGTGCAATCGATCCGAACAGTGTGTGTGCGTGTGCGTGTGTGGGCAACTGGAACAAATGCTTAAACTACGCCACTAGTTTGTTGTTTTGCTGCACAGTACACGAGCGTCGATCGGGTAGAAAATGAGTACCCGGCCAAGCCCTGCACCCTTCAAGCGATCGATCGATGGGCTGTTCAACGTGTGGCTGAACCTGCGGAACCAGGGCCACGAGAAGCCGCTGCGCAACGCCCTCTACAATGTGCTCGTCGTCGGGGTGATCGCGGTCGTGATCGGCGTCA-CCCTGGTGCTGGCCCCCTTCTTCAAGCCGCTACTGTGGGCGTTCCTGTTC-GGGGCGGTGCTGTTTCCGGCCAAGAAACGGCTCTCCGCCTCGCTCAAGCGCTGGATCGAGCGAATCGAGAAGGATGACAAATACCTGTTGCTGGGTGTGCTGAGTGCGCCGCTCTGCTGGGTGGATTCGCTGGGCGAGTTTCTGACCGGCTGGCTGAAGGAGCATTTGAAAATCATCACCGGACTGGTGGGCGGGCTGGTAACGCTGCGCTTCATACTGTGGCTAACACCGAGCGAGGTGTTTTTCTCCATCTGGAACTTTGTAGTGTGGATCCATTCGCTGTTCCGTACGCTGCTCGGGTCGCTCTCGCTGCAGATGGTG]

[+] EMBL BM588845             [CCGCGGACGCGTGGGCGGACGCGTGGGTGCCTTGGTGCGTGACGAATATGTGCGGAGTGTTTTTCCTTCCAGCGAATCATCCACACCCTTTAGTGGCAACTCGCTAGCCATGAAATAATCGTACCGCTGCAATCGTGCAATCGATCCGAACAGTGTGTGTGCGTGTGCGTGTGTGGGCAACTGGAACAAATGCTTAAACTACGCCACTAGTTTGTTGTTTTGCTGCACAGTACACGAGCGTCGATCGGGTAGAAAATGAGTACCCGGCCAAGCCCTGCACCCTTCAAGCGATCGATCGATGGGCTGTTCAACGTGTGGCTGAACCTGCGGAACCAGGGCCACGAGAAGCCGCTGCGCAACGCCCTCTACAATGTGCTCGTCGTCGGGGTGATCGCGGTCGTGATCGGCGTCACCCCTGGTGCTGGCCCCCTTCTTCAAGCCGCTACTGTGGGCGTTCCTGTTCGGGGGCGGTGCTGTTTCCGGGCAAGAAACGGCTCTCCGCCTCGCTCAAGCGC                                                                                                                                                                                                                                                                              ]
[+] EMBL BM641021             [                                       ccgCGAATATGTGCGGAGTG TTTTCCTTCCAGCGAATCATCCACACCCTTTAGTGGCAACTCGCTAGCCATGAAATAATCGTACCGCTGCAATCGTGCAATCGATCCGAACAGTGTGTGTGCGTGTGCGTGTGTGGGCAACTGGAACAAATGCTTAAACTACGCCACTAGTTTGTTGTTTTGCTGCACAGTACACGAGCGTTGATCGAGTGGAAAATGAGTACCCGGCCAAGCCCTGCACCCTTCAAGCGATCGATCGATGGGCTGTTCAACGTGTGGCTGAACCTGCGGAACCAGGGCCACGAGAAGCCGCTGCGCAACGCTCTCTACAATGTGCTCGTCGTCGGGGTGATCGCGGTCGTGATCGGCGTCA CCCTGGTGCTGGCCCCCTTCTTCAAGCCGCTACTGTGGGCGTTCCTGTTC GGGGCGGTGCTGTTTCCGGCCAAGAAACGGCTCTCCGCCTCGCTCAAGCGCTGGATCGAGCGAATCGAGAAGGACGACAAATACCTGTTGCTGGGTGTGCTGAGTGCGCCGCTCTGCTGGGTGGATTCGCTGGGCGAGTTTCTGACCGGCTGGCTGAAGGAGCATTTGAAAATCATCACCGGACTGGTGGGCGGGCTGGTAACGCTGCGCTTCATACTGTGGCTAACACCGAGCGAGGTGTTTTTCTCCATCTGGAACTTTGT                                                          ]
[+] EMBL BM641287             [                                                                                                ccgCTCGCTAGCCATGAAATAATCGTACCGCTGCAATCGTGCAATCGATCCGAACAGTGTGTGTGCGTGTGCGTGTGTGGGCAACTGGAACAAATGCTTAAACTACGCCACTAGTTTGTTGTTTTGCTGCACAGTACACGAGCGTCGATCGGGTAGAAAATGAGTACCCGGCCAAGCCCTGCACCCTTCAAGCGATCGATCGATGGGCTGTTCAACGTGTGGCTGAACCTGCGGAACCAGGGCCACGAGAAGCCGCTGCGCAACGCCCTCTACAATGTGCTCGTCGTCGGGGTGATCGCGGTCGTGATCGGCGTCA CCCTGGTGCTGGCCCCCTTCTTCAAGCCGCTACTGTGGGCGTTCCTGTTC GGGGCGGTGCTGTTTCCGGCCAAGAAACGGCTCTCCGCCTCGCTCAAGCGCTGGATCGAGCGAATCGAGAAGGATGACAAATACCTGTTGCTGGGTGTGCTGAGTGCGCCACTCTGCTGGGTGGATTCGCTGGGCGAGTTTCTCACCGGCTGGCTGAAGGAGCATTTGAAAATCATCACCGGACTGGTGGGCGGGCTGGTAACGCTGCGCTTCATACTGTGGCTAACACCGAGCGAGGTGTTTTTCTCCATCTGGAACTTTATAGTGTGGATCCATTCGCTGTTCCGTACGCTGCTCGGGTCGCTCTCGCTGCAGATGGTG]
[+] EMBL BM645419             [                                                                                                             ccGAAATAATCGTACCGCTGCAATCGTGCAATCGATCCGAACAGTGTGTGTGCGTGTGCGTGTGTGGGCAACTGGAACAAATGCTCAAACTACGCCACTAGTTTGTTGTTTTGCTGCACAGTACACGAGCGTCGATCGAGTGGAAAATGAGTACCCGGCCAAGCCCTGCACCCTTCAAGCGATCGATCGATGGACTGTTCAACGTGTGGCTGAACCTGCGGAACCAGGGCCACGAGAAGCCACTGCGCAACGCCCTCTACAATGTGCTCGTCGTCGGGGTGATCGCGGTCGTGATCGGCGTCA CCCTGGTGCTGGCCCCCTTCTTCAAGCCGCTACTGTGGGCGTTCCTGTTC GGGGCGGTGCTGTTTCCGGCCAAGAAACGGCTCTCCGCCTCGCTCAAGCGCTGGATCGAGCGAATCGAGAAGGATGACAAATACCTGTTGCTGGGTGTGCTGAGTGCGCCGCTCTGCTGGGTGGATTCGCTGGGCGAGTTTCTGACCGGCTGGCTAAAGGAGCATTTGAAAATCATCACCGGACTGGTGGGCGGGCTGGTAACGCTGCGCTTCATACTGTGGCTAACAC                                                                                            ]




>consensus_5960#0
CCGCGGACGCGTGGGCGGACGCGTGGGTGCCTTGGTGCGTGACGAATATGTGCGGAGTGT
TTTTCCTTCCAGCGAATCATCCACACCCTTTAGTGGCAACTCGCTAGCCATGAAATAATC
GTACCGCTGCAATCGTGCAATCGATCCGAACAGTGTGTGTGCGTGTGCGTGTGTGGGCAA
CTGGAACAAATGCTTAAACTACGCCACTAGTTTGTTGTTTTGCTGCACAGTACACGAGCG
TCGATCGGGTAGAAAATGAGTACCCGGCCAAGCCCTGCACCCTTCAAGCGATCGATCGAT
GGGCTGTTCAACGTGTGGCTGAACCTGCGGAACCAGGGCCACGAGAAGCCGCTGCGCAAC
GCCCTCTACAATGTGCTCGTCGTCGGGGTGATCGCGGTCGTGATCGGCGTCACCCTGGTG
CTGGCCCCCTTCTTCAAGCCGCTACTGTGGGCGTTCCTGTTCGGGGCGGTGCTGTTTCCG
GCCAAGAAACGGCTCTCCGCCTCGCTCAAGCGCTGGATCGAGCGAATCGAGAAGGATGAC
AAATACCTGTTGCTGGGTGTGCTGAGTGCGCCGCTCTGCTGGGTGGATTCGCTGGGCGAG
TTTCTGACCGGCTGGCTGAAGGAGCATTTGAAAATCATCACCGGACTGGTGGGCGGGCTG
GTAACGCTGCGCTTCATACTGTGGCTAACACCGAGCGAGGTGTTTTTCTCCATCTGGAAC
TTTGTAGTGTGGATCCATTCGCTGTTCCGTACGCTGCTCGGGTCGCTCTCGCTGCAGATG
GTG

consensusID : consensus_5960#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 622
fasta sequence

                              [CCGATCAGCGGTTTTCCAGCAAAGGAGCAAAGTTTGCTGCCTTGGTGCGTGACGAATATGTGCGGAGTGTTTTCCTTCCAGCGAATCATCCACACCCTTTAGTGGCAACTCGCTGGCCATGAAATAATCGTACCGCTGCAATCGTGCAATCGATCCGAACAGTGTGTGTGCGTGTGCGTGTGTGGGCAACTGGAACAAATGCTCAAACTACGCCACTAGTTTGTTGTTTTGCTGCACAGTACACGAGCGTCGATCGAGTGGAAAATGAGTACCCGGCCAAGCCCTGCACCCTTCAAGCGATCGATCGATGGACTGTTCAACGTGTGGCTGAACCTGCGGAACCAGGGCCACGAGAAGCCACTGCGCAACGCCCTCTACAATGTGCTCGTCGTCGGGGTGATCGCGGTCGTGATCGGCGTCACCCTGGTGCTGGCCCCCTTCTTCAAGCCGCTACTGTGGGCGTTCCTGTTCGGGGCGGTGCTGTTTCCGGCCAAGAAACGGCTCTCCGCCTCGCTCAAGCGCTGGATCGAGCGAATCGAGAAAGATGACAAATACCTGTTGCTGGGTGTGCTGAGTGCGCCGCCTCTGCTGGGTGGATTCGCTGGGCGAGTTTCTGACCGGC]

[+] EMBL BM647076             [CCGATCAGCGGTTTTCCAGCAAAGGAGCAAAGTTTGCTGCCTTGGTGCGTGACGAATATGTGCGGAGTGTTTTCCTTCCAGCGAATCATCCACACCCTTTAGTGGCAACTCGCTGGCCATGAAATAATCGTACCGCTGCAATCGTGCAATCGATCCGAACAGTGTGTGTGCGTGTGCGTGTGTGGGCAACTGGAACAAATGCTCAAACTACGCCACTAGTTTGTTGTTTTGCTGCACAGTACACGAGCGTCGATCGAGTGGAAAATGAGTACCCGGCCAAGCCCTGCACCCTTCAAGCGATCGATCGATGGACTGTTCAACGTGTGGCTGAACCTGCGGAACCAGGGCCACGAGAAGCCACTGCGCAACGCCCTCTACAATGTGCTCGTCGTCGGGGTGATCGCGGTCGTGATCGGCGTCACCCTGGTGCTGGCCCCCTTCTTCAAGCCGCTACTGTGGGCGTTCCTGTTCGGGGCGGTGCTGTTTCCGGCCAAGAAACGGCTCTCCGCCTCGCTCAAGCGCTGGATCGAGCGAATCGAGAAAGATGACAAATACCTGTTGCTGGGTGTGCTGAGTGCGCCGCCTCTGCTGGGTGGATTCGCTGGGCGAGTTTCTGACCGGC]




>consensus_5960#1
CCGATCAGCGGTTTTCCAGCAAAGGAGCAAAGTTTGCTGCCTTGGTGCGTGACGAATATG
TGCGGAGTGTTTTCCTTCCAGCGAATCATCCACACCCTTTAGTGGCAACTCGCTGGCCAT
GAAATAATCGTACCGCTGCAATCGTGCAATCGATCCGAACAGTGTGTGTGCGTGTGCGTG
TGTGGGCAACTGGAACAAATGCTCAAACTACGCCACTAGTTTGTTGTTTTGCTGCACAGT
ACACGAGCGTCGATCGAGTGGAAAATGAGTACCCGGCCAAGCCCTGCACCCTTCAAGCGA
TCGATCGATGGACTGTTCAACGTGTGGCTGAACCTGCGGAACCAGGGCCACGAGAAGCCA
CTGCGCAACGCCCTCTACAATGTGCTCGTCGTCGGGGTGATCGCGGTCGTGATCGGCGTC
ACCCTGGTGCTGGCCCCCTTCTTCAAGCCGCTACTGTGGGCGTTCCTGTTCGGGGCGGTG
CTGTTTCCGGCCAAGAAACGGCTCTCCGCCTCGCTCAAGCGCTGGATCGAGCGAATCGAG
AAAGATGACAAATACCTGTTGCTGGGTGTGCTGAGTGCGCCGCCTCTGCTGGGTGGATTC
GCTGGGCGAGTTTCTGACCGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5960#0      -----CCGCGGAC-----GCGTGGGCGGACGCGTGGGTGCCTTGGTGCGTGACGAATATG 50
consensus_5960#1      CCGATCAGCGGTTTTCCAGCAAAGGAGCAAAGTTTGCTGCCTTGGTGCGTGACGAATATG 60
                           * ****       **   ** * *    * * ***********************

consensus_5960#0      TGCGGAGTGTTTTTCCTTCCAGCGAATCATCCACACCCTTTAGTGGCAACTCGCTAGCCA 110
consensus_5960#1      TGCGGAGTGTTTT-CCTTCCAGCGAATCATCCACACCCTTTAGTGGCAACTCGCTGGCCA 119
                      ************* ***************************************** ****

consensus_5960#0      TGAAATAATCGTACCGCTGCAATCGTGCAATCGATCCGAACAGTGTGTGTGCGTGTGCGT 170
consensus_5960#1      TGAAATAATCGTACCGCTGCAATCGTGCAATCGATCCGAACAGTGTGTGTGCGTGTGCGT 179
                      ************************************************************

consensus_5960#0      GTGTGGGCAACTGGAACAAATGCTTAAACTACGCCACTAGTTTGTTGTTTTGCTGCACAG 230
consensus_5960#1      GTGTGGGCAACTGGAACAAATGCTCAAACTACGCCACTAGTTTGTTGTTTTGCTGCACAG 239
                      ************************ ***********************************

consensus_5960#0      TACACGAGCGTCGATCGGGTAGAAAATGAGTACCCGGCCAAGCCCTGCACCCTTCAAGCG 290
consensus_5960#1      TACACGAGCGTCGATCGAGTGGAAAATGAGTACCCGGCCAAGCCCTGCACCCTTCAAGCG 299
                      ***************** ** ***************************************

consensus_5960#0      ATCGATCGATGGGCTGTTCAACGTGTGGCTGAACCTGCGGAACCAGGGCCACGAGAAGCC 350
consensus_5960#1      ATCGATCGATGGACTGTTCAACGTGTGGCTGAACCTGCGGAACCAGGGCCACGAGAAGCC 359
                      ************ ***********************************************

consensus_5960#0      GCTGCGCAACGCCCTCTACAATGTGCTCGTCGTCGGGGTGATCGCGGTCGTGATCGGCGT 410
consensus_5960#1      ACTGCGCAACGCCCTCTACAATGTGCTCGTCGTCGGGGTGATCGCGGTCGTGATCGGCGT 419
                       ***********************************************************

consensus_5960#0      CACCCTGGTGCTGGCCCCCTTCTTCAAGCCGCTACTGTGGGCGTTCCTGTTCGGGGCGGT 470
consensus_5960#1      CACCCTGGTGCTGGCCCCCTTCTTCAAGCCGCTACTGTGGGCGTTCCTGTTCGGGGCGGT 479
                      ************************************************************

consensus_5960#0      GCTGTTTCCGGCCAAGAAACGGCTCTCCGCCTCGCTCAAGCGCTGGATCGAGCGAATCGA 530
consensus_5960#1      GCTGTTTCCGGCCAAGAAACGGCTCTCCGCCTCGCTCAAGCGCTGGATCGAGCGAATCGA 539
                      ************************************************************

consensus_5960#0      GAAGGATGACAAATACCTGTTGCTGGGTGTGCTGAGTGCGCCGC-TCTGCTGGGTGGATT 589
consensus_5960#1      GAAAGATGACAAATACCTGTTGCTGGGTGTGCTGAGTGCGCCGCCTCTGCTGGGTGGATT 599
                      *** **************************************** ***************

consensus_5960#0      CGCTGGGCGAGTTTCTGACCGGCTGGCTGAAGGAGCATTTGAAAATCATCACCGGACTGG 649
consensus_5960#1      CGCTGGGCGAGTTTCTGACCGGC------------------------------------- 622
                      ***********************                                     

consensus_5960#0      TGGGCGGGCTGGTAACGCTGCGCTTCATACTGTGGCTAACACCGAGCGAGGTGTTTTTCT 709
consensus_5960#1      ------------------------------------------------------------
                                                                                  

consensus_5960#0      CCATCTGGAACTTTGTAGTGTGGATCCATTCGCTGTTCCGTACGCTGCTCGGGTCGCTCT 769
consensus_5960#1      ------------------------------------------------------------
                                                                                  

consensus_5960#0      CGCTGCAGATGGTG 783
consensus_5960#1      --------------