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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5979#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1076 fasta sequence
[CTTTCCGTACACGATTTGCTTCAAAATAAGCTAAATTGCACAAAGAAAGGAGCACAGGCTTTCAGGAATCGGATGCAAACTGAAGTTTTGCAGAGTCGGCCCACCGTTTGGCAATATTAATTCGATTGTAGAACATGGCAGATGAACGTAACTTCCGGTCAACGTACTACGAAAAGGTCGGTTGCCGGGGTGTGGAGGAACGAAAATCGCTCGAAATCCTGCTGAAGGAGAAACCCCTCAATCTGACCAAGCTTACACAGTTCTGCATACGCTTTACCGTACCCAAAATACATCGTACCGTGCTATGGAACTCGCTGCTAGGTGTTACACCGGTTTACGACAAGTCGCGAGAATATGTGATGGAACAACGAGTAGCCGTGTATAACGATCTACTAAAGGCGCTGAAAATTATGCGAATAGTGGACGAGAACACACCGACATCGAGGGTGCTGTACGCGATGTGGCTGCTGGAGAAGAAACAACTGTACCTTGGCCGAGACATCACTCAAGAAAGCCATTTCTGCAACATCACAAAAGTGCTGCTAGAAATATTCGACAACGACATCGAAACGTACTGGATGGCGAAAAGTCTGTACGACTACTCCGAGGAGGTGTCGTTGGAGATGGGGAAGCTGTCCGACCTGACGTACACGATACATCCATCTGAAGTCCTGTGATATGCTAACCGCACTGCCGCTGGCCGACTGGTACCGGTCGTTCTTTGCCGGGGTACTGTCGGAACCGGCCCTGATCCGCATCTGGGATAAGATCTGTGGCGGTGCGATTAAGATCGTGGTGTTCGTGATGATCGAAATACTGCGCATGCTGCGCAGACGAGTTCTGCGCTGTGTTGATCAGAAGAGCCTGTTCGAGTGCATCGACAGTATAAAGAACGAGCAAGAAACGGCCGATATGATCGTGAACGGGGCAATCGAGCTGTGGCAACAGAACAAGGGCCACGAGTACATCCCACAGTCAAAAGTGAAAGCACTCAGCTAAAACGCAAACGAGAAACCTGGTTAATACCATCTCTCGAAGAGAGCTGTACATTCGGCAAGCGCGTTATGTTTATGTTT]
[+] EMBL BX629049 [CTTTCCGTACACGATTTGCTTCAAAATAAGCTAAATTGCACAAAGAAAGGAGCACAGGCTTTCAGGAATCGGATGCAAACTGAAGTTTTGCAGAGTCGGCCCACCGTTTGGCAATATTAATTCGATTGTAGAACATGGCAGATGAACGTAACTTCCGGTCAACGTACTACGAAAAGGTCGGTTGCCGGGGTGTGGAGGAACGAAAATCGCTCGAAATCCTGCTGAAGGAGAAACCCCTCAATCTGACCAAGCTTACACAGTTCTGCATACGCTTTACCGTACCCAAAATACATCGTACCGTGCTATGGAACTCGCTGCTAGGTGTTACACCGGTTTACGACAAGTCGCGAGAATATGTGATGGAACAACGAGTAGCCGTGTATAACGATCTACTAAAGGCGCTGAAAATTATGCGAATAGTGGACGAGAACACACCGACATCGAGGGTGCTGTACGCGATGTGGCTGCTGGAGAAGAAACAACTGTACCTTGGCCGAGACATCACTCAAGAAAGCCATTTCTGCAACATCACAAAAGTGCTGCTAGAAATATTCGACAACGACATCGAAACGTACTGGATGGCGAAAAGTCTGTACGACTACTCCGAGGAGGTGTCGTTGGAGATGGGG ]
[+] EMBL BX608922 [ CAACGAGTAGCCGTGTATAACGATCTACTAAAGGCGCTGAAAATTATGCGAATAGTGGACGAGAACACACCGACATCGAGGGTGCTGTACGCGATGTGGCTGCTGGAGAAGAAACAACTGTACCTTGGCCGAGACATCACTCAAGAAAGCCATTTCTGCAACATCACAAAAGTGCTGCTAGAAATATTCGACAACGACATCGAAACGTACTGGATGGCGAAAAGTCTGTACGACTACTCCGAGGAGGTGTCGTTGGAGATGGGGAAGCTGTCCGACCTGACGTACACGATACATCCATCTGAAGTCCTGTGATATGCTAACCGCACTGCCGCTGGCCGACTGGTACCGGTCGTTCTTTGCCGGGGTACTGTCGGAACCGGCCCTGATCCGCATCTGGGATAAGATCTGTGGCGGTGCGATTAAGATCGTGGTGTTCGTGATGATCGAAATACTGCGCATGCTGCGCAGACGAGTTCTGCGCTGTGTTGATCAGAAGAGCCTGTTCGAGTGCATCGACAGTATAAAGAACGAGCAAGAAACGGCCGATATGATCGTGAACGGGGCAATCGAGCTGTGGCAACAGAACAAGGGCCACGAGTACATCCCACAGTCAAAAGTGAAAGCACTCAGCTAAAACGCAAACGAGAAACCTGGTTAATACCATCTCTCGAAGAGAGCTGTACATTCGGCAAGCGCGTTATGTTTATGTTT]
consensusID : consensus_5979#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 852 fasta sequence
[CCGAAATTGCACAAAGAAAGGAGCACAGGCTTTCAGGAATCGGATGCAAACTGAAGTTTTGCAGAGTCGGCCCACCGTTTGGCAATATTAATTCGATTGTAGAACATGGCAGATGAACGTAACTTCCGGTCAACGTACTACGAAAAGGTCGGTTGCCGGGGTGTGGAGGAACGAAAATCGCTCGAAATCCTGCTGAAGGAGAAACCCCTCAATCTGACCAAGCTTACACAGTTCTGCATACGCTTTACCGTACCCAAAATACATCGTACCGTGCTATGGAACTCGCTGCTAGGTGTTACACCGGTTTACGACAAGTCGCGAGAATATGTGATGGAACAACGAGTAGCCGTGTATAACGATCTACTAAAGGCGCTGAAAATTATGCGAATAGTGGACGAGAACACACCGACATCGAGGGTGCTGTACGCGATGTGGCTGCTGGAGAAGAAACAACTGTACCTTGGCCGAGACATCACTCAAGAAAGCCATTTCTGCAACATCACAAAAGTGCTGCTAGAAATATTCGACAACGACATCGAAACGTACTGGATGGCGAAAAGTCTGTACGACTACTCCGAGGAGGTGTCGTTGGAGATGGGGAAGCTGTCCGACCTGACGTACACGATACT-GGAAAAGGAAGACAGCGGGCTGTACATCCATCTGAAGTCCTGTGATATGCTAACCGCACTGCCGCTGGCCGACTGGTACCGGTCGTTCTTTGCCGGGGTACTGTCGGAACCGGCCCTGATCCGCATCTGGGATAAGATCTGTGGCGGTGCGATTAAGATCGTGGTGTTCGTGATGATCGAAATACTGCGCATGCTGCGCAGACGAGTTCTGCGCTGTGTTGAT]
[+] EMBL BM588958 [CCGAAATTGCACAAAGAAAGGAGCACAGGCTTTCAGGAATCGGATGCAAACTGAAGTTTTGCAGAGTCGGCCCACCGTTTGGCAATATTAATTCGATTGTAGAACATGGCAGATGAACGTAACTTCCGGTCAACGTACTACGAAAAGGTCGGTTGCCGGGGTGTGGAGGAACGAAAATCGCTCGAAATCCTGCTGAAGGAGAAACCCCTCAATCTGACCAAGCTTACACAGTTCTGCATACGCTTTACCGTACCCAAAATACATCGTACCGTGCTATGGAACTCGCTGCTAGGTGTTACACCGGTTTACGACAAGTCGCGAGAATATGTGATGGAACAACGAGTAGCCGTGTATAACGATCTACTAAAGGCGCTGAAAATTATGCGAATAGTGGACGAGAACACACCGACATCGAGGGTGCTGTACGCGATGTGGCTGCTGGAGAAGAAACAACTGTACCTTGGCCGAGACATCACTCAAGAAAGCCATTTCTGCAACATCACAAAAGTGCTGCTAGAAATATTCGACAACGACATCGAAACGTACTGGATGGCGAAAAGTCTGTACGACTACTCCGAGGAGGTGTCGTTGGAAATGGGGAAGCTGTCCGACCTGACGTACACGATACTGGGAAAAGGAAGACAG ]
[+] EMBL BX628131 [ AGGAGAAACCCCTCAATCTGACCAAGCTTACACAGTTCTGCATACGCTTTACCGTACCCAAAATACATCGTACCGTGCTATGGAACTCGCTGCTAGGTGTTACACCGGTTTACGACAAGTCGCGAGAATATGTGATGGAACAACGAGTAGCCGTGTATAACGATCTACTAAAGGCGCTGAAAATTATGCGAATAGTGGACGAGAACACACCGACATCGAGGGTGCTGTACGCGATGTGGCTGCTGGAGAAGAAACAACTGTACCTTGGCCGAGACATCACTCAAGAAAGCCATTTCTGCAACATCACAAAAGTGCTGCTAGAAATATTCGACAACGACATCGAAACGTACTGGATGGCGAAAAGTCTGTACGACTACTCCGAGGAGGTGTCGTTGGAGATGGGGAAGCTGTCCGACCTGACGTACACGATACT GGAAAAGGAAGACAGCGGGCTGTACATCCATCTGAAGTCCTGTGATATGCTAACCGCACTGCCGCTGGCCGACTGGTACCGGTCGTTCTTTGCCGGGGTACTGTCGGAACCGGCCCTGATCCGCATCTGGGATAAGATCTGTGGCGGTGCGATTAAGATCGTGGTGTTCGTGATGATCGAAATACTGCGCATGCTGCGCAGACGAGTTCTGCGCTGTGTTGAT]
[+] EMBL BX628221 [ GACCAAGCTTACACAGTTCTGCATACGCTTTACCGTACCCAAAATACATCGTACCGTGCTATGGAACTCGCTGCTAGGTGTTACACCGGTTTACGACAAGTCGCGAGAATATGTGATGGAACAACGAGTAGCCGTGTATAACGATCTACTAAAGGCGCTGAAAATTATGCGAATAGTGGACGAGAACACACCGACATCGAGGGTGCTGTACGCGATGTGGCTGCTGGAGAAGAAACAACTGTACCTTGGCCGAGACATCACTCAAGAAAGCCATTTCTGCAACATCACAAAAGTGCTGCTAGAAATATTCGACAACGACATCGAAACGTACTGGATGGCGAAAAGTCTGTACGACTACTCCGAGGAGGTGTCGTTGGAGATGGGGAAGCTGTCCGACCTGACGTACACGATACT GGAAAAGGAAGACAGCGGGCTGTACATCCATCTGAAGTCCTGTGATATGCTAACCGCACTGCCGCTGGCCGACTGGTACCGGTCGTTCTTTGCCGGGGTACTGTCGGAACCGGCCCTGATCCGCATCTGGGATAAGATCTGTGGCGGTGCGATTAAGATCGTGGTGTTCGTGATGATCGAAATACT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5979#0 CTTTCCGTACACGATTTGCTTCAAAATAAGCTAAATTGCACAAAGAAAGGAGCACAGGCT 60
consensus_5979#1 -----------------------------CCGAAATTGCACAAAGAAAGGAGCACAGGCT 31
* ****************************
consensus_5979#0 TTCAGGAATCGGATGCAAACTGAAGTTTTGCAGAGTCGGCCCACCGTTTGGCAATATTAA 120
consensus_5979#1 TTCAGGAATCGGATGCAAACTGAAGTTTTGCAGAGTCGGCCCACCGTTTGGCAATATTAA 91
************************************************************
consensus_5979#0 TTCGATTGTAGAACATGGCAGATGAACGTAACTTCCGGTCAACGTACTACGAAAAGGTCG 180
consensus_5979#1 TTCGATTGTAGAACATGGCAGATGAACGTAACTTCCGGTCAACGTACTACGAAAAGGTCG 151
************************************************************
consensus_5979#0 GTTGCCGGGGTGTGGAGGAACGAAAATCGCTCGAAATCCTGCTGAAGGAGAAACCCCTCA 240
consensus_5979#1 GTTGCCGGGGTGTGGAGGAACGAAAATCGCTCGAAATCCTGCTGAAGGAGAAACCCCTCA 211
************************************************************
consensus_5979#0 ATCTGACCAAGCTTACACAGTTCTGCATACGCTTTACCGTACCCAAAATACATCGTACCG 300
consensus_5979#1 ATCTGACCAAGCTTACACAGTTCTGCATACGCTTTACCGTACCCAAAATACATCGTACCG 271
************************************************************
consensus_5979#0 TGCTATGGAACTCGCTGCTAGGTGTTACACCGGTTTACGACAAGTCGCGAGAATATGTGA 360
consensus_5979#1 TGCTATGGAACTCGCTGCTAGGTGTTACACCGGTTTACGACAAGTCGCGAGAATATGTGA 331
************************************************************
consensus_5979#0 TGGAACAACGAGTAGCCGTGTATAACGATCTACTAAAGGCGCTGAAAATTATGCGAATAG 420
consensus_5979#1 TGGAACAACGAGTAGCCGTGTATAACGATCTACTAAAGGCGCTGAAAATTATGCGAATAG 391
************************************************************
consensus_5979#0 TGGACGAGAACACACCGACATCGAGGGTGCTGTACGCGATGTGGCTGCTGGAGAAGAAAC 480
consensus_5979#1 TGGACGAGAACACACCGACATCGAGGGTGCTGTACGCGATGTGGCTGCTGGAGAAGAAAC 451
************************************************************
consensus_5979#0 AACTGTACCTTGGCCGAGACATCACTCAAGAAAGCCATTTCTGCAACATCACAAAAGTGC 540
consensus_5979#1 AACTGTACCTTGGCCGAGACATCACTCAAGAAAGCCATTTCTGCAACATCACAAAAGTGC 511
************************************************************
consensus_5979#0 TGCTAGAAATATTCGACAACGACATCGAAACGTACTGGATGGCGAAAAGTCTGTACGACT 600
consensus_5979#1 TGCTAGAAATATTCGACAACGACATCGAAACGTACTGGATGGCGAAAAGTCTGTACGACT 571
************************************************************
consensus_5979#0 ACTCCGAGGAGGTGTCGTTGGAGATGGGGAAGCTGTCCGACCTGACGTACACGATAC--- 657
consensus_5979#1 ACTCCGAGGAGGTGTCGTTGGAGATGGGGAAGCTGTCCGACCTGACGTACACGATACTGG 631
*********************************************************
consensus_5979#0 -----------------------ATCCATCTGAAGTCCTGTGATATGCTAACCGCACTGC 694
consensus_5979#1 AAAAGGAAGACAGCGGGCTGTACATCCATCTGAAGTCCTGTGATATGCTAACCGCACTGC 691
*************************************
consensus_5979#0 CGCTGGCCGACTGGTACCGGTCGTTCTTTGCCGGGGTACTGTCGGAACCGGCCCTGATCC 754
consensus_5979#1 CGCTGGCCGACTGGTACCGGTCGTTCTTTGCCGGGGTACTGTCGGAACCGGCCCTGATCC 751
************************************************************
consensus_5979#0 GCATCTGGGATAAGATCTGTGGCGGTGCGATTAAGATCGTGGTGTTCGTGATGATCGAAA 814
consensus_5979#1 GCATCTGGGATAAGATCTGTGGCGGTGCGATTAAGATCGTGGTGTTCGTGATGATCGAAA 811
************************************************************
consensus_5979#0 TACTGCGCATGCTGCGCAGACGAGTTCTGCGCTGTGTTGATCAGAAGAGCCTGTTCGAGT 874
consensus_5979#1 TACTGCGCATGCTGCGCAGACGAGTTCTGCGCTGTGTTGAT------------------- 852
*****************************************
consensus_5979#0 GCATCGACAGTATAAAGAACGAGCAAGAAACGGCCGATATGATCGTGAACGGGGCAATCG 934
consensus_5979#1 ------------------------------------------------------------
consensus_5979#0 AGCTGTGGCAACAGAACAAGGGCCACGAGTACATCCCACAGTCAAAAGTGAAAGCACTCA 994
consensus_5979#1 ------------------------------------------------------------
consensus_5979#0 GCTAAAACGCAAACGAGAAACCTGGTTAATACCATCTCTCGAAGAGAGCTGTACATTCGG 1054
consensus_5979#1 ------------------------------------------------------------
consensus_5979#0 CAAGCGCGTTATGTTTATGTTT 1076
consensus_5979#1 ----------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||