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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5992#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 963 fasta sequence
[TGAGGTGGAAAAGCTTGTTGCTTCGTTTGGAATTGGGAAAGTAGAAAGTCGTCCCAGGAAGGACATCGTTGGAAAACGGGAAA--ACACACACACACTCACACATTCCTTTGGAAATCGTTCATTCAGACCGTTAGTCGTTACTTTATAATATTCAGTTATACAAAATGGACCGTTGTGAGCAGCACGTACAAGCGATCCCTCTGCAGCGCCTTAATACACGTGAAGAACACCAAAGGCGGCAACATTTGCGGCATGTATTCGAAAAGTACGACTCGGATTCCGATGGATATCTCAATATAGTTGAGATGAAACACCTAATACACGAAAAAAAGTGTGCCGATATGCCTAAAGATTTGGCGTTGCATCTGCTTAAGTTGTCGGATACAAACAACGATGGCCGGTTGGATTTCGAAGAATTTTACAAACTCAGTCTCGAGCATCCGTACTTTTTGTGTGAAATGTATATTAAATATTGTAAAGCAGTGGTGCCTAAACGTAACGATGCTGAAGAAGGAGATGTATTAGATGGCGAATATGAGCAAAGCATGAAACTTTGGCCTCCACCACTGATGATGATAATTTTTTCGATTATGGAAATAATTTTCTTCGTCATCGATATTGTGAAAACGCAGGATCAAAATGGTACAAGCACTAGCGGCCCGATGGCGACTTTGTTTATCTACAATCCACACCTCAGGCACGAGGTGTGGCGGTTCCTGACGTATATGTTTGTACATATCGGATTCATGCATCTGATTATGAATCTGCTGGTGCAAATCTTTCTTGGAGTTGCACTAGAACTGGTACACTGCTGGTGGCGTGTGGCGCTGGTGTATCTGGCTGGTGTTGTCGCCGGGTCCATGGGTACCTCACTGTTCACTCCGCGCGTATTCCTTGCTGGTGCTTCCGGCGGAGTTTACGCACTCATCACAGCTCACATTGCGACTATTATCATGAATTGGA]
[+] EMBL CNS08JYN [TGAGGTGGAAAAGCTTGTTGCTTCGTTTGGAATTGGGAAAGTAGAAAGTCGTCCCAGGAAGGACATCGTTGGAAAACGGGAAA ACACACACACACTCACACATTCCTTTGGAAATCGTTCATTCAGACCGTTAGTCGTTACTTTATAATATTCAGTTATACAAAATGGACCGTTGTGAGCAGCACGTACAAGCGATCCCTCTGCAGCGCCTTAATACACGTGAAGAACACCAAAGGCGGCAACATTTGCGGCATGTATTCGAAAAGTACGACTCGGATTCCGATGGATATCTCAATATAGTTGAGATGAAACACCTAATACACGAAAAAAAGTGTGCCGATATGCCTAAAGATTTGGCGTTGCATCTGCTTAAGTTGTCGGATACAAACAACGATGGCCGGTTGGATTTCGAAGAATTTTACAAACTCAGTCTCGAGCATCCGTACTTTTTGTGTGAAATGTATATTAAATATTG ]
[+] EMBL CNS09869 [ TGGAATTGGG AAGTAGAAAGTCGTCCCAGGAAGGACATCGTTGGAAAACGGGAAAACACACACACACACTCACACATTCCTTTGGAAATCGTTCATTCAGACCGTTAGTCGTTACTTTATAATATTCAGTTATACAAAATGGACCGTTGTGAGCAGCACGTACAAGCGATCCCTCTGCAGCGCCTTAATACACGTGAAGAACACCAAAGGCGGCAACATTTGCGGCATGTATTCGAAAAGTACGACGCGGATTCCGATGGATATCTCAATATAGTTGAGATGAAACACCTAATACACGAAAAAAAGTGTGCCGATATGCCTAAAGATTTGGCGTTGCATCTGCTTAAGTTGTCGGATACAAACAACGATGGCCGGTTGGATTTCGAAGAATTTTACAAACTCAGTCTCGAGCATCCGTACTTTTTGTGTGAAATGTATATTAAATATTGTAAAGCAGTGGTGCCTAAACGTAACGATGCTGAAGAAGGAGATGTATTAGATGGCGAATATGAGCAAAGCATGAAACTTTGGCCTCCACCACTGATGATGATAATTTTTTCGATTATGGAAATAATTTTCTTCGTCATCGATATTGTGAAAACGCAGGATCAAAATGGTACAAGCACTAGCGGCCCGATGGCGACTTTGTTTATCTACAATCCACACCTCAGGCACGAGGTGTGGCGGTTCCTGACGTATATGTTTGTACATATCGGATTCATGCATCTGATTATGAATCTGCTGGTGCAAATCTTTCTTGGAGTTGCACTAGAACTGGTACACTGCTGGTGGCGTGTGGCGCTGGTGTATCTGGCTGGTGTTGTCGCCGGGTCCATGGGTACCTCACTGTTCACTCCGCGCGTATTCCTTGCTGGTGCTTCCGGCGGAGTTTACGCACTCATCACAGCTCACATTGCGACTATTATCATGAATTGGA]
consensusID : consensus_5992#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 777 fasta sequence
[AAAGTTTTATTCTCCTTCATAATACTATAGCAATAAGTACACGCAACATGAATCGTTTTGCTTGAAAGCAGCTCACATGTAAACTCCGCAAGCCAAAAGCTCCATGCACGAATAATAAAAATATAAAGGCACGATTACCTTTCAAGTTGGAAATGATCGATGGTTTGGCGTAAAAGGCACTAAGGCTGAGCTGTAAAGGCACCATAGTAAAATCGTTAACAGTGCTTGCACTATGTACAATACTTATAGTAGGATTTTCCTGTCAGCACGCGCCGACAGTGTTCGCTTGTAGTTTTGAGCATATGAATGTGCGGTTGCAATACTAGAAGCCTAGTAAAAATGGGAAGGATCTAAAAAGTGGTACATTATACCAGCGATCATTATCACGAAATAAATTGACACGGCACACCACCACAACTTGCGCTCCCAGGACTCGACTTTAAGATTCCGCAGCACACCTATTCCGACCAGAAATCCCGCCAAGGCACCACTTGCATGGGCAATATAGCCCACTTTATCGAAGGGATCGTTAATACTGTTGTATATTGAAACACCTAAATCGGTCACGCAAAAGACTAAAAACACAAACAGCTGGACGATAGCGTACTCCATTTGCTTCCAATTCATGATAATAGTCGCAATATGAGCTGTGATGAGTGCGTAAACTCCGCCGGAAGCACCAGCAAGGAATACGCCGCAAATGTTGCCGCCTTTGGTGTTCTTCACGTGTATTAAGGCGCTGCAGAGGGATCGCTTGTACGTGCTGCTCACAACCGG]
[+] EMBL CNS08JYO [AAAGTTTTATTCTCCTTCATAATACTATAGCAATAAGTACACGCAACATGAATCGTTTTGCTTGAAAGCAGCTCACATGTAAACTCCGCAAGCCAAAAGCTCCATGCACGAATAATAAAAATATAAAGGCACGATTACCTTTCAAGTTGGAAATGATCGATGGTTTGGCGTAAAAGGCACTAAGGCTGAGCTGTAAAGGCACCATAGTAAAATCGTTAACAGTGCTTGCACTATGTACAATACTTATAGCAGGATTTTCCTGTCAGCACGCGCCGACATTGTTCGCTTGTAGTTTTGAGCATATGAATGTGCGGTTGCAATACTAGAAGCCTAGTAAAAATGGGAAGGATCTAAAAAGTGGTACATTATACTAGCGATC ]
[+] EMBL CNS0986A [ ATTCTCCTTCATAATACTATAGCAATAAGTACACGCAACATGAATCGTTTTGCTTGAAAGCAGCTCACATGTAAACTCCGCAAGCCAAAAGCTCCATGCACGAATAATAAAAATATAAAGGCACGATTACCTTTCAAGTTGGAAATGATCGATGGTTTGGCGTAAAAGGCACTAAGGCTGAGCTGTAAAGGCACCATAGTAAAATCGTTAACAGTGCTTGC CTATGTACAATACTTATAGTAGGATTTTCCTGTCAGCACGCGCCGACAGTGTTCGCTTGTAGTTTTGAGCATATGAATGTGCGGTTGCAATACTAGAAGCCTAGTAAAAATGGGACGGATCTAAAAAGTGGTACATTATACCAGCGATTATTATCACGAAATAAAT ]
[-] EMBL BM635417 [ AGCTCCATGCACGAATAATAAAAATATAAAGGCACGATTACCTTTCAAGTTGGAAATGATCGATGGTTTGGCGTAAAAGGCACTAAGGCTGAGCTGTAAAGGCACCATAGTAAAATCGTTAACAGTGCTTGCACTATGTACAATACTTATAGTAGGATTTTCCTGTCAGCACGCGCCGACAGTGTTCGCTTGTAGTTTTGAGCATATGAATGTGCGGTTGCAATACTAGAAGCCTAGTAAAAATGGGAAGGATCTAAAAAGTGGTACATTATACCAGCGATCATTATCACGAAATAAATTGACACGGCACACCACCACAACTTGCGCTCCCAGGACTCGACTTTAAGATTCCGCAGCACACCTATTCCGACCAGAAATCCCGCCAAGGCACCACTTGCATGGGCAATATAGCCCACTTTATCGAAGGGATCGTTAATACTGTTGTATATTGAAACACCTAAATCGGTCACGCAAAAGACTAAAAACACAAACAGCTGGACGATAGCGTACTCCATTTGCTTCCAATTCATGATAATAGTCGCAATATGAGCTGTGATGAGTGCGTAAACTCCGCCGGAAGCACCAGCAAGGAATACGCCGCAAATGTTGCCGCCTTTGGTGTTCTTCACGTGTATTAAGGCGCTGCAGAGGGATCGCTTGTACGTGCTGCTCACAACCGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5992#0 TGAGGTGGAAAAGCTTGTTGCTTCGTTTGGAATTGGGAAAGTAGAAAGTCGTCCCAGGAA 60
consensus_5992#1 ------------------------------------------------------------
consensus_5992#0 GGACATCGTTGGAAAACGGGAAAACACACACACACTCACACATTCCTTTGGAAATCGTTC 120
consensus_5992#1 ----------------------------------------------------AAAGTTTT 8
** **
consensus_5992#0 ATTCAGACCGTTAGTCGTTACTTTATAATATTCAGT-TATACAAAATGGACCGTTGTG-- 177
consensus_5992#1 ATTC------TCCTTCATAATACTATAGCAATAAGTACACGCAACATGAATCGTTTTGCT 62
**** * ** * * **** * * *** * *** *** * **** **
consensus_5992#0 ----AGCAGCACGTACAAGCGATCCCTCTGC-AGCGCCTTAATACACGTGAAGAACACCA 232
consensus_5992#1 TGAAAGCAGCTCACATGTAAACTCCGCAAGCCAAAAGCTCCATGCACGAATAATAAAAAT 122
****** * * *** ** * ** ** **** * * *
consensus_5992#0 AAGGCGGCAACATTTGCGGCATGTATTCGAAAAGTACGACTCGGATTCCGATGGATATCT 292
consensus_5992#1 ATAAAGGCA-CGATTACCTTTCAAGTTGGAAATGATCGAT----GGTTTGGCGTAAAAGG 177
* **** * ** * ** **** * *** * * * * *
consensus_5992#0 CAATATAGTTGAGATGAAA---CACC-TAATACA--CGAAAAAAAGTGTGCCGATATGCC 346
consensus_5992#1 CACTAAGGCTGAGCTGTAAAGGCACCATAGTAAAATCGTTAACAGTGCTTGCACTATGTA 237
** ** * **** ** ** **** ** ** * ** ** * * * ****
consensus_5992#0 TAAAGATTTGGCGTTGCATCTGCTTAAGTTGTCGGATACAAACAACGATGGCCGGTTGGA 406
consensus_5992#1 CAAT-ACTTATAGTAGGATTTTCCT--GTCAGCACGCGC---CGACAGTGTTCGCTTGTA 291
** * ** ** * ** * * * ** * * * ** ** ** *** *
consensus_5992#0 TTTCGAAGAATTTTACAAACTCAGTCTCGAGCATCCGTACTTTTTGTGTGAAATGTATAT 466
consensus_5992#1 GTTTTGAGCATATGA-ATGTGCGGTTGCAA-------TACTAGAAGCCTAGTAAAAATGG 343
** ** ** * * * * ** * * **** * * * **
consensus_5992#0 TAAATATTGTAAAGCAGTGGTGCCTAAACGTAACGATGCTGAAGAAGGAGATGTATTAGA 526
consensus_5992#1 GAAGGATCTAAAA--AGTGGTACATTATACCAGCGATCATTATCACG-AAATAAATT-GA 399
** ** *** ****** * * * * **** * * * * * ** *** **
consensus_5992#0 TGGCGAATATGAGCAAAGCATGAAACTTTGGCCTCCACCACTGATGATGATAATTTTTTC 586
consensus_5992#1 CACGGCACACCACCACAACTTGCGCTCCCAGGACTCGACTTTAAGATTCCGCAGCACACC 459
* * * * ** * * ** * * * * * * * *
consensus_5992#0 GATTATGGAAATAATTTTCTTCGTCATCGATATTGTGAAAACGCAGGATCAAAATGGTAC 646
consensus_5992#1 TATTCCGACCAGAAATCCCGCCAA----GGCACCACT----TGCATGGGCAATATAGCCC 511
*** * * ** * * * * * *** * *** ** * *
consensus_5992#0 AAGCACT--AGCGGCCCGATGGCGACTTTGTTTATCTACAATCCACACCTCAGGCACGAG 704
consensus_5992#1 ACTTTATCGAAGGGATCGTTAATACTGTTGTATAT-TGAAACACCTAAATCGGTCACGCA 570
* * * ** ** * **** *** * ** * * ** * ****
consensus_5992#0 GTGTGGCGGTTCCTGACGTATATGTTTGTAC-ATATCGGATTCATGCATCTGATTATGAA 763
consensus_5992#1 AAA----GACTAAAAACACAAACAGCTGGACGATAGCGTACTC---CATTTGCTTCCAAT 623
* * ** * * ** ** *** ** * ** *** ** ** *
consensus_5992#0 TCTGCTGGTGCAAATCTTTCTTGGAGTTGCACT-AGAACTGGTACACTGCTGGTGGCGTG 822
consensus_5992#1 TC--ATGATAATAGTCGCAATATGAGCTGTGATGAGTGCGTAAACTCCGCCGGAAGCAC- 680
** ** * * ** * *** ** * ** * ** * ** ** **
consensus_5992#0 TGGCGCTGGTGTATCTGGCTGGTGTTGTCGCCGGGTCCATGGGTACCTCACTGTTCACTC 882
consensus_5992#1 CAGCAA-GGAATACGCCGCAAATGTTGCCGCC--------------TTTGGTGTT--CTT 723
** ** ** ** ***** **** * **** **
consensus_5992#0 CGCGCGTATTCCTTGCTGGTGCTTCCGGCGGAGTTTACGCACTCATCACAGCTCACATTG 942
consensus_5992#1 CACGTGTATTAA-----GGCGCTGCAGAGGGATCGCTTGTACG---TGCTGCTCACAACC 775
* ** ***** ** *** * * *** * ** * *******
consensus_5992#0 CGACTATTATCATGAATTGGA 963
consensus_5992#1 GG------------------- 777
*
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||