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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6001#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1441 fasta sequence
[CCCCTGTTGAGTGTGTTCCTTTGCGTTTGCATCTCGATGATCATTACGATCATCACCCGTCTTCTTTCATCATCCCCCCCGTCCCTCTCATTTGTACACATGTAAGGCAATCATCCCCCAAGCGTGATTAGGAGTTGTGTGTGTGAGTGTTTGTTTTAGTTTTTCATTCCGCCGTTCGCTTCCGTTCCGTTTTTTTTTTCTTCTTTTCTTTTTTTAGGTGTTTAATTTTTAGGTTGTGCATGCAAGCAGCAGTGCGTCCCTCTATTTGCCTCTGCCTATTACTTCCTCTTCCACATATATGTGTATGTATGTGACTGTGTATATGTGTGTGTTTTTTGTATGTATGTGTGTGTGTGTCTGCGTGATAGTATAATGATCGTGATAAAAGTGAAAACACGTGGAGGAGAAGCGTCTACTAACAACGATAAAACGGAACACATAGGCATATTACACATCAAAACCGTGCGCGTGCCAAAATAGTGTAAAAGGAAGAGAGAAAGAGAGAGAGAGAGGAAGGAAGAAAGTGAGAGTCACAATACAGTAAGGTTGTATACTACTTTTTAAGCAGCATTATTGAATCTCAACACGCCTGATGTTGTTTGGTGTGTGTATCGCCAATAGAAAATGCCTCGTGTGGCAGACAACGACGCCCCAGAACTGATTTTCAGCTTATTTGGCTTGTTTTCTATTTTTCCCAATTATTCCCACAACGATCGTGTGCGGAGGAGGGCACACGCATTATTTTCCTTACTTCTTTTACACTACTATGTTGTACAACGATGAAGCTAAGTTTTACACATTTTAGAAGCGATTTTATAAGTTTTTTGTCACCCCCGCAGCACAGGATCGTACCGATTCTGTTTAAAGAAGGAACACGGATTTCAAGGTGTTATAATATGTATGTGAAGATTACAGTATAGAGAGGGGGAGACAAGGTGATTGTAGTTTCCTGTGGGGACACGCCACCCCACTACTGGAGGGAGCAGGAGCAATTGAAAGTCAAAGACGATTCATAGTTTATAAAGTGCATTTTCAAGCCAATACGGGGAAAAAAGCAAGTGAAAAGTAGGGGCAAAATTTCTCCTCTCCCACGTTATCAATAAGCAATACAAATAAGCGTAAGCAATTCGTTACAAAAACATAAAAAGATTCGTTAAATTCGTGTGTTTTCTAAAAGAAAAATATAACAAAAGAGCAAAGATAAAACTATTTTTGGAAAGTAAAGAACATAATAGAGTCTAATCGAGTAAAATAATAAGTGGAGGAGTGTTTGAGAGAACCTGGCAGAAGAAGAGAGATCCAAAATGGA-GTAAGCGGCGTTCTTTTTGCCCTCCCTAATGATTCCTTCATCGTTCG-AAATCGTGTT-AAATATGATAAGAAGTTTAATAGAGAGTTGTAAGATTATCTTTAACATGTGAGGCACGTTAGCCCTGGGGGCGAT]
[+] EMBL BX624730 [CCCCTGTTGAGTGTGTTCCTTTGCGTTTGCATCTCGATGATCATTACGATCATCACCCGTCTTCTTTCATCATCCCCCCCGTCCCTCTCATTTGTACACATGTAAGGCAATCATCCCCCAAGCGTGATTAGGAGTTGTGTGTGTGAGTGTTTGTTTTAGTTTTTCATTCCGCCGTTCGCTTCCGTTCCGTTTTTTTTTTCTTCTTTTCTTTTTTTAGGTGTTTAATTTTTAGGTTGTGCATGCAAGCAGCAGTGCGTCCCTCTATTTGCCTCTGCCTATTACTTCCTCTTCCACATATATGTGTATGTATGTGACTGTGTATATGTGTGTGTTTTTTGTATGTATGTGTGTGTGTGTCTGCGTGATAGTATAATGATCGTGATAAAAGTGAAAACACGTGGAGGAGAAGCGTCTACTAACAACGATAAAACGGAACACATAGGCATATTACACATCAAAACCGTGCGCGTGCCAAAATAGTGTAAAAGGAAGAGAGAAAGAGAGAGAGAGAGGAAGGAAGAAAGTGAGAGTCACAATACAGTAAGGTTGTATACTACTTTTTAAGCAGCATTATTGAATCTCAACACGCCTGATGTTGTTTGGTGTGTGTATCGCCAATAGAAAATGCCTCGTGTGGCAGACAACGACGCCCCAGAACTGATTTTCAGCTTATTTGGCTTGTTTTCTATTTTTCCCAATTATTCCCACAACGATCGTGTGCGGAGGAGGGCACACGCATTATTTTCCTTACTTCTTTTACACTACTATGTTGTACAACGATGAAGCTAAGTTTTACACATTTTAGAAG ]
[+] EMBL BX622425 [ GTGTGGCGCCAAAAGAAAATGCCTCGTGTGGCAGACAACGACCCCCCAGAACTGATTTTCAGCTTATTTGGCTTGTTTTCTATTTTTCCCAATTATTCCCACAACGATCGTGTGCGGAGGAGGGCACACGCATTATTTTCCTTACTTCTTTTACACTACTATGTTGTACAATGATGAAGCCGAGTTGTACACATTTTAGAAGCGATTTTATAAGTTTTTTGTCACCCCCGCAGCACAGGATCGTACCGATTCTGTTTAAAGAAGGAACACGGATTTCAAGGTGTTATAATATGTATGTGAAGATTACAGTATAGAGAGGGGGAGACAAGGTGATTGTAGTTTCCTGTGGGGACACGCCACCCCACTACTGGAGGGAGCAGGAGCAATTGAAAGTCAAAGACGATTCATAGTTTATAAAGTGCATTTTCAAGCCAATACGGGGAAAAAAGCAAGTGAAAAGTAGGGGCAAAATTTCTCCTCTCCCACGTTATCAATAAGCAATACAAATAAGCGTAAGCAATTCGTTACAAAAACATAAAAAGATTCGTTAAATTCGTGTGTTTTCTAAAAGAAAAATATAACAAAAGAGCAAAGATAAAACTATTTTTGGAAAGTAAAGAACATAATAGAGTCTAATCGAGTAAAATAATAAGTGGAGGAGTGTTTGAGAGAACCTGGCAGAAGAAGAGAGATCCAAAATGGA GTAAGCGGCGTTCTTTTTGCCCTCCCTAATGATTCCTTCATCGTTCG AAATCGTGTT AAATATGATAAGAAGTTTAATAGAG ]
[-] EMBL AL930341 [ TAGAAGCGATTTTATAAGTTTTTTGTCACCCCCGCAGCACAGGATCGTACCGATTCTGTTTAAAGAAGGAACACGGATTTCAAGGTGTTATAATATGTATGTGAAGATTACAGTATAGAGAGGGGGAGACAAGGTGATTGTAGTTTCCTGTGGGGACACGCCACCCCACTACTGGAGGGAGCAGGAGCAATTGAAAGTCAAAGACGATTCATAGTTTATAAAGTGCATTTTCAAGCCAATACGGGGAAAAAAGCAAGTGAAAAGTAGGGGCAAAATTTCTCCTCTCCCACGTTATCAATAAGCAATACAAATAAGCGTAAGCAATTCGTTAC AAAACATAAAAAGATTCGTTAAATTCGTGTGTTTTCTAAAAGAAAAATATAAC AAAGAGCAAAGATAAAACTATTTTTGGAAAGTAAAGAACATAATAGAGTCTAATCGAGTAAAATAATAAGTGGAGGAGTGTTTGAGAGAACCTGGCAGAAGAAGAGAGATCCAAAATGGAGGGAAGCGGCGTTCTTTTTGCCCTCCCTAATGATTCCTTCATCGTTCGAAAATCGTGTTAAAATATGATAAGAAGTTTAATAGAGAGTTGTAAGATTATCTTTAACATGTGAGGCACGTTAGCCCTGGGGGCGAT]
consensusID : consensus_6001#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 552 fasta sequence
[CAAGGTAATTGTAGTTTCCTGTGGGACACGCCACCCCACTACTGGGGGGAGCTGGAGCAATTGAAAGTCAAAGACGGTTCATAGTTAATAAAGTGCATTTGCAAGCTAATTCGAGGAAAAAAGCAAGTGAAAAGTAGGGGCAAAATTTGTCCTCTCCCACGTTATCAATAAGCAATACAAATAAGCGTAAGAATTCGTTACAAAAACAAAAAAAGATTCGTTAAATTCGTGTGTTTTCTAAAAGAAAAATATAAAAAAGGGCAAAGATAAAACTATTTTTGGAAAGTAAAGAACAGAATAGAGTCTAATCGAGTAAATTGATAAGTGGAAGAGTGTTTGAGCGGAACTGACAGAAGAAGAGAGATCCAAAATGGAAGGAAGCGTTCTTTTTGCCCTCCCTAATGATTCCTTCATCGTTCGAAAACCCTGTAAAATATGATAAGAAGTTTAATAGAGAGTTGTAAGATTATCTTTAACATGTGAGGCACGTGTAGCAAAAAAGAAAAAAAAAACAGCAATCCTGAAGAAGTATTGAACTGAAATTGGATTGGA]
[+] EMBL CNS09BOZ [CAAGGTAATTGTAGTTTCCTGTGGGACACGCCACCCCACTACTGGGGGGAGCTGGAGCAATTGAAAGTCAAAGACGGTTCATAGTTAATAAAGTGCATTTGCAAGCTAATTCGAGGAAAAAAGCAAGTGAAAAGTAGGGGCAAAATTTGTCCTCTCCCACGTTATCAATAAGCAATACAAATAAGCGTAAGAATTCGTTACAAAAACAAAAAAAGATTCGTTAAATTCGTGTGTTTTCTAAAAGAAAAATATAAAAAAGGGCAAAGATAAAACTATTTTTGGAAAGTAAAGAACAGAATAGAGTCTAATCGAGTAAATTGATAAGTGGAAGAGTGTTTGAGCGGAACTGACAGAAGAAGAGAGATCCAAAATGGAAGGAAGCGTTCTTTTTGCCCTCCCTAATGATTCCTTCATCGTTCGAAAACCCTGTAAAATATGATAAGAAGTTTAATAGAGAGTTGTAAGATTATCTTTAACATGTGAGGCACGTGTAGCAAAAAAGAAAAAAAAAACAGCAATCCTGAAGAAGTATTGAACTGAAATTGGATTGGA]
consensusID : consensus_6001#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 395 fasta sequence
[GGCAAGAATCNCGCACGAGNGNGATAAACGGAACACATAGGCATCATTACACATCAAAACCGTGCGCGTGCCAAAATATTGTAAAAGGAAGAGGGTAAGAAAGAGAGAGTGGAAGGAAGAAAGTGAGAGTCACAATACAGTAAGGTTGTACCCTATTTTTTAAGCAGCATTATTGAATCTCATCACGGCCTGGATGTTGTTTGGTGTGTGTGGCGCCAAAAGGAAAATGCCTCGTGTGGCAGACAACGGAACCCCCAGGAACTGATTTTCAGGCTTATTTGGCTTGTTTTATCTATTTTTCCCAATTATTCCCACAACGATCGTGTGCGGAGGAAGGCACACGCACTTATTTTCCTTACTTCTTTTACACTACTATGTTGTACAATGATGAANNC]
[+] EMBL BX468273 [GGCAAGAATCNCGCACGAGNGNGATAAACGGAACACATAGGCATCATTACACATCAAAACCGTGCGCGTGCCAAAATATTGTAAAAGGAAGAGGGTAAGAAAGAGAGAGTGGAAGGAAGAAAGTGAGAGTCACAATACAGTAAGGTTGTACCCTATTTTTTAAGCAGCATTATTGAATCTCATCACGGCCTGGATGTTGTTTGGTGTGTGTGGCGCCAAAAGGAAAATGCCTCGTGTGGCAGACAACGGAACCCCCAGGAACTGATTTTCAGGCTTATTTGGCTTGTTTTATCTATTTTTCCCAATTATTCCCACAACGATCGTGTGCGGAGGAAGGCACACGCACTTATTTTCCTTACTTCTTTTACACTACTATGTTGTACAATGATGAANNC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6001#0 CCCCTGTTGAGTGTGTTCCTTTGCGTTTGCATCTCGATGATCATTACGATCATCACCCGT 60
consensus_6001#2 ------------------------------------------------------------
consensus_6001#1 ------------------------------------------------------------
consensus_6001#0 CTTCTTTCATCATCCCCCCCGTCCCTCTCATTTGTACACATGTAAGGCAATCATCCCCCA 120
consensus_6001#2 ------------------------------------------------------------
consensus_6001#1 ------------------------------------------------------------
consensus_6001#0 AGCGTGATTAGGAGTTGTGTGTGTGAGTGTTTGTTTTAGTTTTTCATTCCGCCGTTCGCT 180
consensus_6001#2 ------------------------------------------------------------
consensus_6001#1 ------------------------------------------------------------
consensus_6001#0 TCCGTTCCGTTTTTTTTTTCTTCTTTTCTTTTTTTAGGTGTTTAATTTTTAGGTTGTGCA 240
consensus_6001#2 ------------------------------------------------------------
consensus_6001#1 ------------------------------------------------------------
consensus_6001#0 TGCAAGCAGCAGTGCGTCCCTCTATTTGCCTCTGCCTATTACTTCCTCTTCCACATATAT 300
consensus_6001#2 ------------------------------------------------------------
consensus_6001#1 ------------------------------------------------------------
consensus_6001#0 GTGTATGTATGTGACTGTGTATATGTGTGTGTTTTTTGTATGTATGTGTGTGTGTGTCTG 360
consensus_6001#2 ------------------------------------------------------------
consensus_6001#1 -----------------CAAGGTAATTGTAGTTTCCTGTGGGACACGCCACCCCACTACT 43
consensus_6001#0 CGTGATAGTATAATGATCGTGATAAAAGTGAAAACACGTGGAGGA-GAAGCGTCTACTAA 419
consensus_6001#2 ----------------------------------------GGCAA-GAATCNCGCACGAG 19
consensus_6001#1 GGGGGGAGCTGGAGCAATTGAAAGTCAAAGACGGTTCATAGTTAATAAAGTGCATTTGCA 103
* * **
consensus_6001#0 CAACGATAAAACGGAACACATAGGCAT-ATTACACATCAAAACCGTGCGCGTGCCAAAAT 478
consensus_6001#2 NGN-GATAAA-CGGAACACATAGGCATCATTACACATCAAAACCGTGCGCGTGCCAAAAT 77
consensus_6001#1 AGCTAATTCGAGGAAAAAAGCAAGTGAAAAGTAGGGGCAAAATTTGTCCTCTCCCACGTT 163
** * ** * * * * ***** * * *** *
consensus_6001#0 AGTGTAAAAGGAAGAGAGAAAGAGAGAGAGAGAGGAAGGAAGAAAGTGAGAGTCACAATA 538
consensus_6001#2 ATTGTAAAAGGAAGAGGGTAAGAAAGAGAGAGTGGAAGGAAGAAAGTGAGAGTCACAATA 137
consensus_6001#1 ATCAATAAGCAATACAAATAAGCGTAAGAATTCGTTACAAAAACAAAAAAAG-----ATT 218
* ** * *** *** * * ** * * * ** **
consensus_6001#0 CAGTAAGGTTGTATACTACTTTTTAAGCAGCATTATTGAATCTCAACACGCCT--GATGT 596
consensus_6001#2 CAGTAAGGTTGTACCCTATTTTTTAAGCAGCATTATTGAATCTCATCACGGCCTGGATGT 197
consensus_6001#1 CGTTAAATTCGTG---TGTTTTCTAAAAGAAAAATATAAAAAAGGGCAAAGATAAAACTA 275
* *** * ** * *** *** * * ** ** *
consensus_6001#0 TGTTTGGTGTGTGTATCGCCAAT-------------AG-AAAATGCCTCGTGTGGCAGAC 642
consensus_6001#2 TGTTTGGTGTGTGTGGCGCCAAA-------------AGGAAAATGCCTCGTGTGGCAGAC 244
consensus_6001#1 TTTTTGGAAAGTAAAGAACAGAATAGAGTCTAATCGAGTAAATTGATAAGTGGAAGAGTG 335
* ***** ** * * ** *** ** *** **
consensus_6001#0 ----AACGACGCC--CC--AGAACTGATTTTCAG-CTTATTTGGCTTGTTTT--CTATTT 691
consensus_6001#2 ----AACGGAACC--CCCAGGAACTGATTTTCAGGCTTATTTGGCTTGTTTTATCTATTT 298
consensus_6001#1 TTTGAGCGGAACTGACAGAAGAAGAGAGATCCAAAATGGAAGGAAGCGTTCTTTTTGCCC 395
* ** * * *** ** * ** * * *** * *
consensus_6001#0 TTCCCAATTATTCCCACAACGATCGTGTGCGGAGGAGGGCACACGCA-TTATTTTCCTTA 750
consensus_6001#2 TTCCCAATTATTCCCACAACGATCGTGTGCGGAGGAAGGCACACGCACTTATTTTCCTTA 358
consensus_6001#1 TCCCTAATGATTCCTTCATCGTTCGAAAACCCTGTAAAATATG-ATAAGAAGTTTAATAG 454
* ** *** ***** ** ** *** * * * * * * *** *
consensus_6001#0 CTTCTTTTACACTACTATGTTGTACA-ACGATGAAGCTAAGTTTTACACATTTTAGAAGC 809
consensus_6001#2 CTTCTTTTACACTACTATGTTGTACA-ATGATGAANNC---------------------- 395
consensus_6001#1 AGAGTTGTAAG--ATTATCTTTAACATGTGAGGCACGTGTAGCAAAAAAGAAAAAAAAAA 512
** ** * *** ** *** ** * *
consensus_6001#0 GATTTTATAAGTTTTTTGTCACCCCCGCAGCACAGGATCGTACCGATTCTGTTTAAAGAA 869
consensus_6001#2 ------------------------------------------------------------
consensus_6001#1 CAGCAATCCTGAAGAAGTATTGAACTGAAATTGGATTGGA-------------------- 552
consensus_6001#0 GGAACACGGATTTCAAGGTGTTATAATATGTATGTGAAGATTACAGTATAGAGAGGGGGA 929
consensus_6001#2 ------------------------------------------------------------
consensus_6001#1 ------------------------------------------------------------
consensus_6001#0 GACAAGGTGATTGTAGTTTCCTGTGGGGACACGCCACCCCACTACTGGAGGGAGCAGGAG 989
consensus_6001#2 ------------------------------------------------------------
consensus_6001#1 ------------------------------------------------------------
consensus_6001#0 CAATTGAAAGTCAAAGACGATTCATAGTTTATAAAGTGCATTTTCAAGCCAATACGGGGA 1049
consensus_6001#2 ------------------------------------------------------------
consensus_6001#1 ------------------------------------------------------------
consensus_6001#0 AAAAAGCAAGTGAAAAGTAGGGGCAAAATTTCTCCTCTCCCACGTTATCAATAAGCAATA 1109
consensus_6001#2 ------------------------------------------------------------
consensus_6001#1 ------------------------------------------------------------
consensus_6001#0 CAAATAAGCGTAAGCAATTCGTTACAAAAACATAAAAAGATTCGTTAAATTCGTGTGTTT 1169
consensus_6001#2 ------------------------------------------------------------
consensus_6001#1 ------------------------------------------------------------
consensus_6001#0 TCTAAAAGAAAAATATAACAAAAGAGCAAAGATAAAACTATTTTTGGAAAGTAAAGAACA 1229
consensus_6001#2 ------------------------------------------------------------
consensus_6001#1 ------------------------------------------------------------
consensus_6001#0 TAATAGAGTCTAATCGAGTAAAATAATAAGTGGAGGAGTGTTTGAGAGAACCTGGCAGAA 1289
consensus_6001#2 ------------------------------------------------------------
consensus_6001#1 ------------------------------------------------------------
consensus_6001#0 GAAGAGAGATCCAAAATGGAGTAAGCGGCGTTCTTTTTGCCCTCCCTAATGATTCCTTCA 1349
consensus_6001#2 ------------------------------------------------------------
consensus_6001#1 ------------------------------------------------------------
consensus_6001#0 TCGTTCGAAATCGTGTTAAATATGATAAGAAGTTTAATAGAGAGTTGTAAGATTATCTTT 1409
consensus_6001#2 ------------------------------------------------------------
consensus_6001#1 ------------------------------------------------------------
consensus_6001#0 AACATGTGAGGCACGTTAGCCCTGGGGGCGAT 1441
consensus_6001#2 --------------------------------
consensus_6001#1 --------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||