cluster # 6002

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Anopheles gambiae
cluster # 6002 cluster # 6002 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6002#0 length = 769 sequences # 1

consensus_6002#1 length = 687 sequences # 3
consensus_6002#2 length = 429 sequences # 1

consensusID : consensus_6002#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 769
fasta sequence

                              [GGCAAGAATCCGCACGATNGCCGAGTCGGAAGCAGGAAGCAGCTTTCAGTAGGCAGTGGAGATCAACACAAAAGAGATCAAATGACCGGTTACGATACTTTGAAACAGATTGGAAAAAAGCATCGAGCTGAGCATTTCAGTCTGGGAGATTTGAAAAAGGACTACAGCACGGCGTTCGAACAAAATGTGCAGCTGTATGGAACGCAAGTACCCTTCGGTAAATTGTTTGCAGTCTATTTAGAGAATGATTATGAAACAAGCTATTGTAATTGTAATGTAGGGGATACAGAGGTCAGTTTGAGTCATGCACTTTGGATTTTAAACAAATTCAACGCAAATCCGACCGAAAATGGACTAGATTTTATATTGGATGAGCACATATTTGTACAGCGAACATTAACTCGAGGAGATGAAAGATATTTGTCGTGCAATGTTGAGGATTTGTTCAAGGAGTTTAAAGAAGGTTACTCTACGGAATGGGACTATAGTTTCTTGAGCCAGTATGACAAAAGAATCGAAAGACTACGTACCTGTGCAGGAGTTTAACGACACTTTCTCCGATGCTAAGGAGGAATGGCTAAGGAGTATACCGCTACAGCCGCAGGTTGACTTATGAATATAGCGAAGAAAAAACTTACATGAGCTGGTTAGGGAATGGATGAGCCAACATTCCCAAATNGGTTTGCTTATTGGTAGGNGTCCGGGCCGGCCAGGTGGGGCAAAGAAGCCACCGTTAGCAGAACANAGAGCNGAGCAGACAGAGAAACGC]

[+] EMBL BX467963             [GGCAAGAATCCGCACGATNGCCGAGTCGGAAGCAGGAAGCAGCTTTCAGTAGGCAGTGGAGATCAACACAAAAGAGATCAAATGACCGGTTACGATACTTTGAAACAGATTGGAAAAAAGCATCGAGCTGAGCATTTCAGTCTGGGAGATTTGAAAAAGGACTACAGCACGGCGTTCGAACAAAATGTGCAGCTGTATGGAACGCAAGTACCCTTCGGTAAATTGTTTGCAGTCTATTTAGAGAATGATTATGAAACAAGCTATTGTAATTGTAATGTAGGGGATACAGAGGTCAGTTTGAGTCATGCACTTTGGATTTTAAACAAATTCAACGCAAATCCGACCGAAAATGGACTAGATTTTATATTGGATGAGCACATATTTGTACAGCGAACATTAACTCGAGGAGATGAAAGATATTTGTCGTGCAATGTTGAGGATTTGTTCAAGGAGTTTAAAGAAGGTTACTCTACGGAATGGGACTATAGTTTCTTGAGCCAGTATGACAAAAGAATCGAAAGACTACGTACCTGTGCAGGAGTTTAACGACACTTTCTCCGATGCTAAGGAGGAATGGCTAAGGAGTATACCGCTACAGCCGCAGGTTGACTTATGAATATAGCGAAGAAAAAACTTACATGAGCTGGTTAGGGAATGGATGAGCCAACATTCCCAAATNGGTTTGCTTATTGGTAGGNGTCCGGGCCGGCCAGGTGGGGCAAAGAAGCCACCGTTAGCAGAACANAGAGCNGAGCAGACAGAGAAACGC]




>consensus_6002#0
GGCAAGAATCCGCACGATNGCCGAGTCGGAAGCAGGAAGCAGCTTTCAGTAGGCAGTGGA
GATCAACACAAAAGAGATCAAATGACCGGTTACGATACTTTGAAACAGATTGGAAAAAAG
CATCGAGCTGAGCATTTCAGTCTGGGAGATTTGAAAAAGGACTACAGCACGGCGTTCGAA
CAAAATGTGCAGCTGTATGGAACGCAAGTACCCTTCGGTAAATTGTTTGCAGTCTATTTA
GAGAATGATTATGAAACAAGCTATTGTAATTGTAATGTAGGGGATACAGAGGTCAGTTTG
AGTCATGCACTTTGGATTTTAAACAAATTCAACGCAAATCCGACCGAAAATGGACTAGAT
TTTATATTGGATGAGCACATATTTGTACAGCGAACATTAACTCGAGGAGATGAAAGATAT
TTGTCGTGCAATGTTGAGGATTTGTTCAAGGAGTTTAAAGAAGGTTACTCTACGGAATGG
GACTATAGTTTCTTGAGCCAGTATGACAAAAGAATCGAAAGACTACGTACCTGTGCAGGA
GTTTAACGACACTTTCTCCGATGCTAAGGAGGAATGGCTAAGGAGTATACCGCTACAGCC
GCAGGTTGACTTATGAATATAGCGAAGAAAAAACTTACATGAGCTGGTTAGGGAATGGAT
GAGCCAACATTCCCAAATNGGTTTGCTTATTGGTAGGNGTCCGGGCCGGCCAGGTGGGGC
AAAGAAGCCACCGTTAGCAGAACANAGAGCNGAGCAGACAGAGAAACGC

consensusID : consensus_6002#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 687
fasta sequence

                              [CCGAGAAAGGAATAATACGTGGATTTGCGCAGCAGATCAAATTGGTTTGTGCTCTATTATTTTGCTCAGCGAAAGTACAACATTGACTGCGTTTAACAGAGAATACATCCTTTCTCCCCAAAGAACAAGAAGAAAAAGAGATTCTGAGATTATAGA-TCAATCTGCTTTCTTACAATTGAACAAAATGGAGAGTTTGGCAAAAGCAACCGACGAATGTAAAATGGAGAGTCTGGCAAAAGCAACCGACGAATGCAACGAACAGCTAAAAGCGAGCTCACTGCAAGATAAGCCTAGTCCGAGTCGGAAG-CAGGAAGCAGTTTCAGTAGGCAGTGGAGATCAACACAAAAGAGATCAAATGACCGGTTACGATACTTTGAAACAGATTGGAAAAAAGCATCGAGCT-GAGCATTTCAGTCTGGGAGATTTGAAAAAGGACTACAGCACGGCGTTCGAACAAAATGTGCAGCTGTGTGGAACGCAAGTACCCTTCGGTAAATTGTTTGCAGTCTATTTAGAGAAACATGCTAATTATGAAACAAGCTATTGTAATTGTAATGTAGGGGATACAGAGGTCAGTTTGAGCGTTGCACTTAGGATTTTAGACAAATTCAACGCAAATCCGACCGAAAATGAACTAGATTTTATACTGGATGAGCACATATTTGTACAGCGAACATTAACTCGAAG]

[+] EMBL BM590008             [CCGAGAAAGGAATAATACGTGGATTTGCGCAGCAGATCAAATTGGTTTGTGCTCTATTATTTTGCTCAGCGAAAGTACAACATTGACTGCGTTTAACAGAGAATACATCCTTTCTCCCCAAAGAACAAGAAGAAAAAGAGATTCTGAGATTATAGA TCAATCTGCTTTCTTACAATTGAACAAAATGGAGAGTTTGGCAAAAGCAACCGACGAATGTAAAATGGAGAGTCTGGCAAAAGCAACCGACGAATGCAACGAACAGCTAAAAGCGAGCTCACTGCAAGATAAGCCTAGTCCGAGTCGGAAG CAGGAAGCAGTTTCAGTAGGCAGTGGAGATCAACACAAAAGAGATCAAATGACCGGTTACGATACTTTGAAACAGATTGGAAAAAAGCATCGAGCT GAGCATTTCAGTCTGGGAGATTTGAAAAAGGACTACAGCACGGCGTTCGAACAAAATGTGCAGCTGTGTGGAACGCAAGTACCCTTCGGTAAATTGTTTGCAGTCTATTTAGAGAAACATGCTAATTATGAAACAAGCTATTGTAATTGTAATGTAGGGGATACAGAGGTCAGTTTGAGCGTTGCACTTAGGATTTTAGACAAATTCAACGCAAATCCGACCGAAAATGAACTAGATTTTATACTGGATGAGCACA                            ]
[+] EMBL BM612567             [      ccGGAATAATACGTGGATTTGCGCAGCAGATCAAATTGGTTTGTGCTCTATTATTTTGCTCAGCGAAAGTACAACATTGACTGCGTTCAACAGAGGATACATCCTTTCTCCCCAAAGAACGAGAAGAAGAAGAGATTCTGAGATTATAGATTCTATCTGCTTTCTTACAATTGAAGAAAATGGAGAGTCTGGCAAAAACAACCGACGAATGCAAAATGGAGAGTCTGGCAAAAGCAACCGACGAATGCAACGAACAGCTAAAAGCGAGCTCACTGCAAGATAAGCCAAGCCCGAGTCGGAAGCCAGGAAGCAGTTTCAGTAGACAGTGGAGATCAACACAAAAGAGATCAAATGACCGGTTACGATACTTTGAAACAGATTGGAAAAAAGCATCGAGCTGGAGCGTTTCAG                                                                                                                                                                                                                                                                                 ]
[+] EMBL BM589904             [                            ccgGCAGATCAAATTGGTTTGTGCTCTATTATTTTGCTCAGCGAAAGTACAACATTGACTGCGTTTAACAGAGAATACATCCTTTCTCCCCAAAGAACAAGAAGAAAAAGAGATTCTGAGATTATAGA TCAATCTGCTTTCTTACAATTGAACAAAATGGAGAGTTTGGCAAAAGCAACCGACGAATGTAAAATGGAGAGTCTGGCAAAAGCAACCGACGAATGCAACGAACAGCTAAAAGCGAGCTCACTGCAAGATAAGCCTAGTCCGAGTCGGAAG CAGGAAGCAGTTTCAGTAGGCAGTGGAGATCAACACAAAAGAGATCAAATGACCGGTTACGATACTTTGAAACAGATTGGAAAAAAGCATCGAGCT GAGCATTTCAGTCTGGGAGATTTGAAAAAGGACTACAGCACGGCGTTCGAACAAAATGTGCAGCTGTGTGGAACGCAAGTACCCTTCGGTAAATTGTTTGCAGTCTATTTAGAGAAACATGCTAATTATGAAACAAGCTATTGTAATTGTAATGTAGGGGATACAGAGGTCAGTTTGAGCGTTGCACTTAGGATTTTAGACAAATTCAACGCAAATCCGACCGAAAATGAACTAGATTTTATACTGGATGAGCACATATTTGTACAGCGAACATTAACTCGAAG]




>consensus_6002#1
CCGAGAAAGGAATAATACGTGGATTTGCGCAGCAGATCAAATTGGTTTGTGCTCTATTAT
TTTGCTCAGCGAAAGTACAACATTGACTGCGTTTAACAGAGAATACATCCTTTCTCCCCA
AAGAACAAGAAGAAAAAGAGATTCTGAGATTATAGATCAATCTGCTTTCTTACAATTGAA
CAAAATGGAGAGTTTGGCAAAAGCAACCGACGAATGTAAAATGGAGAGTCTGGCAAAAGC
AACCGACGAATGCAACGAACAGCTAAAAGCGAGCTCACTGCAAGATAAGCCTAGTCCGAG
TCGGAAGCAGGAAGCAGTTTCAGTAGGCAGTGGAGATCAACACAAAAGAGATCAAATGAC
CGGTTACGATACTTTGAAACAGATTGGAAAAAAGCATCGAGCTGAGCATTTCAGTCTGGG
AGATTTGAAAAAGGACTACAGCACGGCGTTCGAACAAAATGTGCAGCTGTGTGGAACGCA
AGTACCCTTCGGTAAATTGTTTGCAGTCTATTTAGAGAAACATGCTAATTATGAAACAAG
CTATTGTAATTGTAATGTAGGGGATACAGAGGTCAGTTTGAGCGTTGCACTTAGGATTTT
AGACAAATTCAACGCAAATCCGACCGAAAATGAACTAGATTTTATACTGGATGAGCACAT
ATTTGTACAGCGAACATTAACTCGAAG

consensusID : consensus_6002#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 429
fasta sequence

                              [CCGCGGACGCGTGGGCAAATTGGTTTGTGCTCTATTATTTTGCTCAGCGAAAGTACAACATTGACTGCGTTTAACAGAGAATACATCCTTTCTCCCCAAAGAACAAGAAGAAAAAGAGATTCTGAGATTATAGATCAGTGTGTAAATAAGGCAACAATTAGCCAGTCGAAAATAGTGTGGCAAAACAAGTGTAATTCTTTACCACCATTTCCACTCCTTAACAGATCTGCTTTCTTACAATTGAACAAAATGGAGAGTTTGGCAAAAGCAACCGACGAATGTAAAATGGAGAGTCTGGCAAAAGCAACCGACGAATGCAACGAACAGCTAAAAGCGAGCTCACTGCAAGATAAGCCTAGTCCGAGTCGGAAGCAGGAAGCAGTTTCAGTAGGCAGTGGAGATCAACACAAAAGAGATCAAATGACCGGT]

[+] EMBL BM589303             [CCGCGGACGCGTGGGCAAATTGGTTTGTGCTCTATTATTTTGCTCAGCGAAAGTACAACATTGACTGCGTTTAACAGAGAATACATCCTTTCTCCCCAAAGAACAAGAAGAAAAAGAGATTCTGAGATTATAGATCAGTGTGTAAATAAGGCAACAATTAGCCAGTCGAAAATAGTGTGGCAAAACAAGTGTAATTCTTTACCACCATTTCCACTCCTTAACAGATCTGCTTTCTTACAATTGAACAAAATGGAGAGTTTGGCAAAAGCAACCGACGAATGTAAAATGGAGAGTCTGGCAAAAGCAACCGACGAATGCAACGAACAGCTAAAAGCGAGCTCACTGCAAGATAAGCCTAGTCCGAGTCGGAAGCAGGAAGCAGTTTCAGTAGGCAGTGGAGATCAACACAAAAGAGATCAAATGACCGGT]




>consensus_6002#2
CCGCGGACGCGTGGGCAAATTGGTTTGTGCTCTATTATTTTGCTCAGCGAAAGTACAACA
TTGACTGCGTTTAACAGAGAATACATCCTTTCTCCCCAAAGAACAAGAAGAAAAAGAGAT
TCTGAGATTATAGATCAGTGTGTAAATAAGGCAACAATTAGCCAGTCGAAAATAGTGTGG
CAAAACAAGTGTAATTCTTTACCACCATTTCCACTCCTTAACAGATCTGCTTTCTTACAA
TTGAACAAAATGGAGAGTTTGGCAAAAGCAACCGACGAATGTAAAATGGAGAGTCTGGCA
AAAGCAACCGACGAATGCAACGAACAGCTAAAAGCGAGCTCACTGCAAGATAAGCCTAGT
CCGAGTCGGAAGCAGGAAGCAGTTTCAGTAGGCAGTGGAGATCAACACAAAAGAGATCAA
ATGACCGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6002#1      ------------------------------------------------------------
consensus_6002#2      ------------------------------------------------------------
consensus_6002#0      GGCAAGAATCCGCACGATNGCCGAGTCGGAAGCAGGAAGCAGCTTTCAGTAGGCAGTGGA 60
                                                                                  

consensus_6002#1      ------------------------------------------------------------
consensus_6002#2      ------------------------------------------------------------
consensus_6002#0      GATCAACACAAAAGAGATCAAATGACCGGTTACGATACTTTGAAACAGATTGGAAAAAAG 120
                                                                                  

consensus_6002#1      ------------------------------------------------------------
consensus_6002#2      ------------------------------------------------------------
consensus_6002#0      CATCGAGCTGAGCATTTCAGTCTGGGAGATTTGAAAAAGGACTACAGCACGGCGTTCGAA 180
                                                                                  

consensus_6002#1      ------------------------------------------------------------
consensus_6002#2      ------------------------------------------------------------
consensus_6002#0      CAAAATGTGCAGCTGTATGGAACGCAAGTACCCTTCGGTAAATTGTTTGCAGTCTATTTA 240
                                                                                  

consensus_6002#1      ---------------------CCGAGAAAGGAATAATACGTGGATTTGCGCAGCAGATCA 39
consensus_6002#2      -------------------------------------CCGCGGACGCGTGGG------CA 17
consensus_6002#0      GAGAATGATTATGAAACAAGCTATTGTAATTGTAATGTAGGGGATACAGAGG-----TCA 295
                                                             * ***              **

consensus_6002#1      AATTGGTTTGTGCTCTATTATTTT-------GCTCAGCGAAAGTACAAC-----ATTGAC 87
consensus_6002#2      AATTGGTTTGTGCTCTATTATTTT-------GCTCAGCGAAAGTACAAC-----ATTGAC 65
consensus_6002#0      GTTTGAGTCATGCACTTTGGATTTTAAACAAATTCAACGCAAATCCGACCGAAAATGGAC 355
                        ***  *  *** ** *   ***         *** ** ** * * **     ** ***

consensus_6002#1      TGCGTTTAACAGAGAATACATCCTT-TCTCCCCAAAGAACAAGAAGAAAAAGAGATTCTG 146
consensus_6002#2      TGCGTTTAACAGAGAATACATCCTT-TCTCCCCAAAGAACAAGAAGAAAAAGAGATTCTG 124
consensus_6002#0      TAGATTTTATATTGGATGAGCACATATTTGTACAGCGAACATTAACTCGAGGAGATGAAA 415
                      *   *** * *  * **     * * * *   **  *****  **    * *****    

consensus_6002#1      AGA--TTATAGATCA--------------------------------------------- 159
consensus_6002#2      AGA--TTATAGATCAGTGTGTAAATAAGGCAACAATTAGCCAGTCGAAAATAGTGTGGCA 182
consensus_6002#0      GATATTTGTCGTGCAATGT-TGAGGATTTGTTCAAGGAGTTTAAAGAAGGTTACTCTACG 474
                           ** * *  **                                             

consensus_6002#1      ----------------------------------------------ATCTGCTTTCTTAC 173
consensus_6002#2      AAACAAG--TGTAATTCTTTA--CCACCATTTCCACTCCTTAACAGATCTGCTTTCTTAC 238
consensus_6002#0      GAATGGGACTATAGTTTCTTGAGCCAGTATGACAAAAGAATCGAAAGACTACGTACCTGT 534
                                                                      ** * * * *  

consensus_6002#1      AATTGAACAAAATGGAGAGTTTGGCAAAAGCAACCGACGAATGTAAAATGGAGAGTCTGG 233
consensus_6002#2      AATTGAACAAAATGGAGAGTTTGGCAAAAGCAACCGACGAATGTAAAATGGAGAGTCTGG 298
consensus_6002#0      GCAGGAGTTTAACG-ACACTTTCTCCGATGCTAAGGAGGAATGGCTAA-GGAGTATACCG 592
                          **    ** * * * ***  *  * ** *  ** *****   ** ****  *   *

consensus_6002#1      CAAAAGCAACCGACGAATGCAACGA-ACAGCTAAAAGCGAGCTCACT---GCAAGATAAG 289
consensus_6002#2      CAAAAGCAACCGACGAATGCAACGA-ACAGCTAAAAGCGAGCTCACT---GCAAGATAAG 354
consensus_6002#0      CTACAGCCGCAGGTTGACTTATGAATATAGCGAAGAAAAAACTTACATGAGCTGGTTAGG 652
                      * * ***  * *    *   *   * * *** ** *   * ** **    **  * ** *

consensus_6002#1      CCTAGTCCGAGTCGGAAGCAGGAAGCAGTTTCAGTAGGCAGTGGAGATCAACACAAAAGA 349
consensus_6002#2      CCTAGTCCGAGTCGGAAGCAGGAAGCAGTTTCAGTAGGCAGTGGAGATCAACACAAAAGA 414
consensus_6002#0      GAATGGATGAGCCAACATTCCCAAATNGGTTTGCTTATTGGTAGGNGTCCGGGCCGGCCA 712
                          *   *** *   *     **   * **   *     ** *   **    *     *

consensus_6002#1      GAT----CAAATGACCGGTTACGATACTTTGAAACAGATTGGAAAAAAGCATCGAGCTGA 405
consensus_6002#2      GAT----CAAATGACCGGT----------------------------------------- 429
consensus_6002#0      GGTGGGGCAAAGAAGCCACCGTTAGCAGAACANAGAGCNGAGCAGACAGAGAAACGC--- 769
                      * *    ****  * *                                            

consensus_6002#1      GCATTTCAGTCTGGGAGATTTGAAAAAGGACTACAGCACGGCGTTCGAACAAAATGTGCA 465
consensus_6002#2      ------------------------------------------------------------
consensus_6002#0      ------------------------------------------------------------
                                                                                  

consensus_6002#1      GCTGTGTGGAACGCAAGTACCCTTCGGTAAATTGTTTGCAGTCTATTTAGAGAAACATGC 525
consensus_6002#2      ------------------------------------------------------------
consensus_6002#0      ------------------------------------------------------------
                                                                                  

consensus_6002#1      TAATTATGAAACAAGCTATTGTAATTGTAATGTAGGGGATACAGAGGTCAGTTTGAGCGT 585
consensus_6002#2      ------------------------------------------------------------
consensus_6002#0      ------------------------------------------------------------
                                                                                  

consensus_6002#1      TGCACTTAGGATTTTAGACAAATTCAACGCAAATCCGACCGAAAATGAACTAGATTTTAT 645
consensus_6002#2      ------------------------------------------------------------
consensus_6002#0      ------------------------------------------------------------
                                                                                  

consensus_6002#1      ACTGGATGAGCACATATTTGTACAGCGAACATTAACTCGAAG 687
consensus_6002#2      ------------------------------------------
consensus_6002#0      ------------------------------------------