These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6006#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 609 fasta sequence [CCGGGATCGCATAGAAGCGCACACGAAAAAATTGGACGATGGAAAACGCCTCCAAGGAGGAGCTGTGCGAGCTGATGGACAAACTGTTGCTCAACTCGCTCGACCTGATCGAGCAGGACGTTCGGCTGAGCCAGGACATTGCGCGCCTCACCACCGAGGGCCAGATGGAGCTGGCACACACGCGCTTCACCAAGGGCCCGAATGCGGTCAGTGCGGTGCAGCTGCCGACGGAGGACTACAAACCCTTCCAGGCACTGGCCACCGTGCAGGTGGAGGAAGCGGTCGAAGATGTCGCGGACCCCATCCAGCACCGTACGCTCGAGCGGCATCCGGTGGGCGACGCGGAGGACGGAGCATCCCGTATCGATCCGAGTGCGTGGTTCGGGATTTTGCGGCCTCCGTCGCTGAACATTGCGAAGGAACGGTTTGCCCGCTCGCTGGACACGATCGTCGAGCGGGCCAACGTGCGGGTGCGGCTGAGCAGCTACCTAAACATGTTCGAGCTGCTCCAGAAGCGTAAGACGGAGCTGTAAGTGT-GTGTGTGGAAGTATCCCGGTGTATGTACATTTCATGTTATTAGTTTCAGTAA-TTCACCGTAATAAATATCTA] [+] EMBL BM646194 [CCGGGATCGCATAGAAGCGCACACGAAAAAATTGGACGATGGAAAACGCCTCCAAGGAGGAGCTGTGCGAGCTGATGGACAAACTGTTGCTCAACTCGCTCGACCTGATCGAGCAGGACGTTCGGCTGAGCCAGGACATTGCGCGCCTCACCACCGAGGGCCAGATGGAGCTGGCACACACGCGCTTCACCAAGGGCCCGAATGCGGTCAGTGCGGTGCAGCTGCCGACGGAGGACTACAAACCCTTCCAGGCACTGGCCACCGTGCAGGTGGAGGAAGCGGTCGAAGATGTCGCGGACCCCATCCAGCACCGTACGCTCGAGCGGCATCCGGTGGGCGACGCGGAGGACGGAGCATCCCGTATCGATCCGAGTGCGTGGTTCGGGATTTTGCGGCCTCCGTCGCTGAACATTGCGAAGGAACGGTTTGCCCGCTCGCTGGACACGATCGTCGAGCGGGCCAACGTGCGGGTGCGGCTGAGCAGCTACCTAAACATGTTCGAGCTGCTCCAGAAGCGTAAGACGGAGCTGTAAGTGTGGTGTGTGGAAGTATCCCGGTGTATGTACATTTC ] [+] EMBL BX626940 [ GATGGAAAACGCCTCCAAGGAGGAGCTGTGCGAGCTGATGGACAAACTGTTGCTCAACTCGCTCGACCTGATCGAGCAGGACGTTCGGCTGAGCCAGGACATTGCGCGCCTCACCACCGAGGGCCAGATGGAGCTGGCACACACGCGCTTCACCAAGGGCCCGAATGCGGTCAGTGCGGTGCAGCTGCCGACGGAGGACTACAAACCCTTCCAGGCACTGGCCACCGTGCAGGTGGAGGAAGCGGTCGAAGATGTCGCGGACCCCATCCAGCACCGTACGCTCGAGCGGCATCCGGTGGGCGACGCGGAGGACGGAGCATCCCGTATCGATCCGAGTGCGTGGTTCGGGATTTTGCGGCCTCCGTCGCTGAACATTGCGAAGGAACGGTTTGCCCGCTCGCTGGACACGATCGTCGAGCGGGCCAACGTGCGGGTGCGGCTGAGCAGCTACCTAAACATGTTCGAGCTGCTCCAGAAGCGTAAGACGGAGCTGTAAGTGT GTGTGTGGAAGTATCCCGGTGTATGTACATTTCATGTTATTAGTTTCAGTAA TTCACCGTAATAAATATCTA] [+] EMBL BM635360 [ ccgGCTGTGCGAGCTGATGGACAAACTGTTGCTCAACTCGCTCGACCTGATCGAGCAGGACGTTCGGCTGAGCCAGGACATTGCGCGCCTCACCACCGAGGGCCAGATGGAGCTGGCACACACGCGCTTCACCAAGGGCCCGAATGCGGTCAGTGCGGTGCAGCTGCCGACGGAGGACTACAAACCCTTCCAGGCACTGGCCACCGTGCAGGTGGAGGAAGCGGTCGAAGACGACGCGGACCCCATCCAGCACCGTACGCTCGAGCGGCATCCGGTGGGCGACGCGGAGGACGGAGCATCCCGTATCGATCCGAGTGCGTGGTTCGGGATTTTGCGGCCTCCGTCGCTGAACATTGCGAAGGAACGGTTTGCCCGCTCGCTGGACACGATCGTCGAGCGGGCCAACGTGCGGGTGCGGCTGAGCAGCTACCTAAACATGTTCGAGCTGCTCCAGAAGCGTAAGACGGAGCTGT AG GT GTGTGTGGAAGTGTCCCGGTGTATGTACATTTCGTGTTATTAGTTTCAGTAATTTCAC ] [-] EMBL CNS08W5Q [ GCCACCGTGCAGGTGGAGAATGCGGTCGAAGACGACGCGGACCCCATCCAGCACCGTACGCTCGAGCGGCATCCGGTGGGCGACGCGGAGGACGGAGCATCCCGTATCGATCCGAGTGCGTGGTTCGGGATTTTGCGGCCTCCGTCGCTGAACATTGCGAAGGAACGGTTTGCCCGCTCGCTGGACACGATCGTCGAGCGGGCCAACGTGCGGGTGCGGCTGAGCAGCTACCTAAACATGTTCGAGTTGCTCCAGAAGCGTAAGACGGAGCTGTAAATGT GTGTGTGGAAGTATCCCGGTGTATGTACATTTCATGTTATTAGTTTCAGTAA TTCACCGTAATAA ] consensusID : consensus_6006#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 354 fasta sequence [TCCGTCTGCTGCCGTTCTGTTTACGGGGATTGCACACGAAAAATTGGACGATGGAAAACGCCTCCAAGGAGCAGCTGTGCGAGCTGATGGACAAACTGTTGCTCAACTCGCTCGACCTGATCGAGCAGGACGTTCGGCTGAGCCAGGACATTGCGCGCCTCACCACCGAGGGCCAGATGGAGCTGGCACACACGCGCTTCACCAAGGGCCCGAATGCGGTCAGTGCGGTGCAGCTGCCGACGGAGGACTACAAACCCTTCCAGGCACTGGCCACCGTGCAGGTGGAGAATGCGGTCGAAGAGACGCGGACCCATCCAGCACCGTACGCTCGAGCGGCATCCGGTGGGCGACGCG] [+] EMBL CNS08W5P [TCCGTCTGCTGCCGTTCTGTTTACGGGGATTGCACACGAAAAATTGGACGATGGAAAACGCCTCCAAGGAGCAGCTGTGCGAGCTGATGGACAAACTGTTGCTCAACTCGCTCGACCTGATCGAGCAGGACGTTCGGCTGAGCCAGGACATTGCGCGCCTCACCACCGAGGGCCAGATGGAGCTGGCACACACGCGCTTCACCAAGGGCCCGAATGCGGTCAGTGCGGTGCAGCTGCCGACGGAGGACTACAAACCCTTCCAGGCACTGGCCACCGTGCAGGTGGAGAATGCGGTCGAAGAGACGCGGACCCATCCAGCACCGTACGCTCGAGCGGCATCCGGTGGGCGACGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6006#0 --------------CCGGGATCGCATAGAAGCGCACACGAAAAAATTGGACGATGGAAAA 46 consensus_6006#1 TCCGTCTGCTGCCGTTCTGTTTACG-GGGATTGCACACGAAAAA-TTGGACGATGGAAAA 58 * * * * * ************ *************** consensus_6006#0 CGCCTCCAAGGAGGAGCTGTGCGAGCTGATGGACAAACTGTTGCTCAACTCGCTCGACCT 106 consensus_6006#1 CGCCTCCAAGGAGCAGCTGTGCGAGCTGATGGACAAACTGTTGCTCAACTCGCTCGACCT 118 ************* ********************************************** consensus_6006#0 GATCGAGCAGGACGTTCGGCTGAGCCAGGACATTGCGCGCCTCACCACCGAGGGCCAGAT 166 consensus_6006#1 GATCGAGCAGGACGTTCGGCTGAGCCAGGACATTGCGCGCCTCACCACCGAGGGCCAGAT 178 ************************************************************ consensus_6006#0 GGAGCTGGCACACACGCGCTTCACCAAGGGCCCGAATGCGGTCAGTGCGGTGCAGCTGCC 226 consensus_6006#1 GGAGCTGGCACACACGCGCTTCACCAAGGGCCCGAATGCGGTCAGTGCGGTGCAGCTGCC 238 ************************************************************ consensus_6006#0 GACGGAGGACTACAAACCCTTCCAGGCACTGGCCACCGTGCAGGTGGAGGAAGCGGTCGA 286 consensus_6006#1 GACGGAGGACTACAAACCCTTCCAGGCACTGGCCACCGTGCAGGTGGAGAATGCGGTCGA 298 ************************************************* * ******** consensus_6006#0 AGATGTCGCGGACCCCATCCAGCACCGTACGCTCGAGCGGCATCCGGTGGGCGACGCGGA 346 consensus_6006#1 AGA-GACGCGGACCC-ATCCAGCACCGTACGCTCGAGCGGCATCCGGTGGGCGACGCG-- 354 *** * ********* ****************************************** consensus_6006#0 GGACGGAGCATCCCGTATCGATCCGAGTGCGTGGTTCGGGATTTTGCGGCCTCCGTCGCT 406 consensus_6006#1 ------------------------------------------------------------ consensus_6006#0 GAACATTGCGAAGGAACGGTTTGCCCGCTCGCTGGACACGATCGTCGAGCGGGCCAACGT 466 consensus_6006#1 ------------------------------------------------------------ consensus_6006#0 GCGGGTGCGGCTGAGCAGCTACCTAAACATGTTCGAGCTGCTCCAGAAGCGTAAGACGGA 526 consensus_6006#1 ------------------------------------------------------------ consensus_6006#0 GCTGTAAGTGTGTGTGTGGAAGTATCCCGGTGTATGTACATTTCATGTTATTAGTTTCAG 586 consensus_6006#1 ------------------------------------------------------------ consensus_6006#0 TAATTCACCGTAATAAATATCTA 609 consensus_6006#1 ----------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||