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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6015#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1598 fasta sequence
[GTAACCGTGGAAGATGGCGTCTAGTTCAGTGAAGGTGCCTGTCGTTGTGCTGCTTCTTGCAATCGCCTGTACCGAAGAAGTCCCTTTTTCGGCAACAATTATGTGCTCCCGCAAGGTGCCCGGCTTGCCAGTTCCGCCACCGCGGTGGTGCGCAATCTAGACGCCGCCCAGCTGCAGGTTCGTGGACTGAACCCAACGTCTTCACCCGGCTTACGCTGGCCGTCCAGGGTGTGGCACAGTGGAACCGAAACCTATCCAGCTCGCTCGAGGTGTTGAAGGAGGCGTTTAACTACGATGTGAATTCCAACACGGCCAGCTATCTGGAAAAGTTGCGGAATGCGTTCGGTCAAAACGTGCAAGAGCTGGCGGAAGTACTCGTGCGGTTGGGTGATGCGGTCCTCCCGGTTGCTGGACAGCCGCTAAACACACAACAGTTTCTGCAGGTAGTGTCGGCAAATGGGACACTGCAGCAGCTGCTGGATGTAGTGGAATACACTGTGCGATTATCAGGCGAGTACTCGACGAGTGTTAGCACCCTGGTGGCAGCAGTTCGTGCTGCCAACGACTTCCAAGCCCGATCGTATGCCTTGCTAAGAACAAACCAGGCATCTATCAACACCAACGTTGACCGGTACAATACTGCATCAAACACATCGTTCTACCGCTTTCTAACGGCGGCCGACTCGCTTCTAACACACCTCAAAGACACGAACGAAAGCTTCGTCTTCCGCTGGCCGCTACTGTTTAGCGAGTCCGTACATCAGAAGCTAAATCTGCTCAATCATTCGATCGATCATTTGACGGGGAACTTGCTGCAGCGAACGGTAACGGTCGCTCAGAATCTCGAGCGGACGAGTGCCCTGTTCAAAGAGGGCAATAACCCACTCAGCTACCTGCGAGAAGAAACCGATCTGTACACGCGCGTTATGCTGGACGTACTGCGTGGCGCAAATTTCTGCGCAACTGGATTTGTTACGACGTTTAACGCGCTTCCAGCACAGGTGACTTCACGTGTAGCGGCATGCCTAACCGAGCAGACGAATCTCGAAAATCAAGGCTCATCGCAGCTGGTGTCGCTTGCGAATGTTTGGATGATATCGTTGCTACCATTGACTTCAGGGACAAGTTCTTCCTGCTCGACCTTGCCAGCCATCTGTACTTCCAGCAGGTCCAGGAAGAGCTGCCACTGTGCAATGATCGCGTATTGCAATTCGTTCGAAACGCTGGACTCCGTGAATCTTGTCGGATCATGTCTGCCGCCGCCGATACGTCGACGTATTATCCACTAGCATGAAATTAAAAAGATCAACAGGGAATAGCATTCGCAAGGCGTAACTTTATTGAATGGGGCAATGTTGAACCACTACTTCTTTGTCCACCGATTACGATAGCGCGTTCGTTTCTTGCTGTATATGCACATCTCCTGAATGTTGTGATAGTTCAGGAAGTACCCGTTCTGCGCTACACACGCATTGAAGTTGTGCTGTATCTCACTATCCACCAACGATTCCACCTGTTTGGCCGCATTATAGATTCTTCCATTAGCCCAATTGTTTTCGTAACCGTTCTGTAACAAATTAAATAAAAACCAAAATAAA]
[+] EMBL CNS09NXR [GTAACCGTGGAAGATGGCGTCTAGTTCAGTGAAGGTGCCTGTCGTTGTGCTGCTTCTTGCAATCGCCTGTACCGAAGAAGTCCCTTTTTCGGCAACAATTATGTGCTCCCGCAAGGTGCCCGGCTTGCCAGTTCCGCCACCGCGGTGGTGCGCAATCTAGACGCCGCCCAGCTGCAGGTTCGTGGACTGAACCCAACGTCTTCACCCGGCTTACGCTGGCCGTCCAGGGTGTGGCACAGTGGAACCGAAACCTATCCAGCTCGCTCGAGGTGTTGAAGGAGGCGTTTAACTACGATGTGAATTCCAACACGGCCAGCTATCTGGAAAAGTTGCGGAATGCGTTCGGTCAAAACGTGCAAGAGCTGGCGGAAGTACTCGTGCGGTTGGGTGATGCGGTCCTCCCGGTTGCTGGACAGCCGCTAAACACACAACAGTTTCTGCAGGTAGTGTCGGCAAATGGGACACTGCAGCAGCTGCTGGATGTAGTGGAATACACTGTGCGATTATCAGGCGAGTACTCGACGAGTGTTAGCACCCTGGTGGCAGCAGTTCGTGCTGCCAACGACTTCCAAGCCCGATCGTATGCCTTGCTAAGAACAAACCAGGCATCTATCAACACCAACGTTGACCGGTACAATACTGCATCAAACACATCGTTCTACCGCTTTCTAACGGCGGCCGACTCGCTTCTAACACACCTCAAAGACACGAACGAAAGCTTCGTCTTCCGCTGGCCGCTACTGTTTAGCGAGTCCGTACATCAGA ]
[+] EMBL CNS097J5 [ ACCGAAGAAGTCCCTTTTTCGGCAACAATTATGTGCTCCCGCAAGGTGCCCGGCTTGCCAGTTCCGCCACCGCGGTGGTGCGCAATCTAGACGCCGCCCAGCTGCAGGTTCGTGGACTGAACCCAACGTCTTCACCCGGCTTACGCTGGCCGTCCAGGGTGTGGCACAGTGGAACCGAAACCTATCCAGCTCGCTCGAGGTGTTGAAGGAGGCGTTTAACTACGATGTGAATTCCAACACGGCCAGCTATCTGGAAAAGTTGCGGAATGCGTTCGGTCAAAACGTGCAAGAGCTGGCGGAAGTACTCGTGCGGTTGGGTGATGCGGTCCTCCCGGTTGCTGGACAGCCGCTAAACACACAACAGTTTCTGCAGGTAGTGTCGGCAAATGGGACACTGCAGCAGCTGCTGGATGTAGTGGAATACACTGTGCGATTATCAGGCGAGTACTCGACGAGTGTTAGCACCCTGGTGGCAGCAGTTCGTGCTGCCAACGACTTCCAAGCCCGATCGTATGCCTTGCTAAGAACAAACCAGGCATCTATCAACACCAACGTTGACCGGTACAATACTGCATCAAACACATCGTTCTACCGCTTTCTAACGGCGGCCGACTCGCTTCTAACACACCTCAAAGACACGAACGAAAGCTTCGTCTTCCGCTGGCCGCTACTGTTTAGCGAGTGCGTACATCAGAAGCTAAATCTGCTCAATCATTCGATCGATCATTTGACGGGGAACTTGCTGCAGCGAACGGTAACGGTCGCTCAGAATCTCGAGCGGACGAGTGCCCTGTTCAAAGAGGGCAATAACCCACTCAGCTACCTGCGAGAAGAAACCGATCTGTACACGCGCGTTATGCTGGACGTACTGCGTGGCGCAA ]
[-] EMBL CNS08WFR [ CGTCTTCCGCTGGCCGTTACTGTTTAGCGAGTCCGTGCATCAGAAGCTAAATCTGCTCAATCATTCCATCGATCATTTGACGGGGAACTTGCTGCAGCGAACGGTAACGGTCGCGCAGAATCTCGAGCGCACGAGTGCCCTGTTCAAAGAGGGCAATAACCCACTCAGCTACCTGCGAGAAGAAACCGATCTGTAAACGCGCGTCATGCTGGACGTACTGAGTGGTGAAAATTTCTGCGCAACTGGATTTGTTACGACGTTTAACGCGCTTCCAGCACAGGTGACTTCACGTGTAGCGGCATGCCTAACCGAGCAGACGAATCTCGAAAATCAAGGCTCATCGCAGCTGGTGTCGCTTGCGAATGTTTGGATGATATCGTTGCTACCATTGACTTCAGGGACAAGTTCTTCCTGCTCGACCTTGCCAGCCATCTGTACTTCCAGCAGGTCCAGGAAGAGCTGCCACTGTGCAATGATCGCGTATTGCAATTCGTTCGAAACGCTGGACTCCGTGAATCTTGTCGGATCATGTCTGCCGCCGCCGATACGTCGACGTATTATCCACTAGCATGAAATTAAAAAGATCAACAGGGAATAGCATTCGCAAGGCGTAACTTTATTGAATGGGGCAATGTTGAACCACTACTTCTTTGTCCACCGATTACGATAGCGCGTTCGTTTCTTGCTGTATATGCACATCTCCTGAATGTTGTGATAGTTCAGGAAGTACCCGTTCTGCGCTACACACGCATTGAAGTTGTGCTGTATCTCACTATCCACCAACGATTCCACCTGTTTGGCCGCATTATAGATTCTTCCATTAGCCCAATTGTTTTCGTAACCGTTCTGTAACAAATTAAATAAAAACCAAAATAAA]
consensusID : consensus_6015#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence
[CCGCCCACGCGTCCGCGGTGGTGGAGATTGTCGTCCATCCCGACTACTACAAGGGCGGTCTGCACAACGATGTGGCCCTACTGTTCCTTAACGCGCCCGTCGAACCGAACGAAAGCATCCAGACGGTGTGTCTGCCCCCGCAGGACATGGCGTTCAACCACGAGACGTGCTTTGCCAGCGGCTGGGGCAAGGACGTGTTCGGTAAGGCCGGCACGTACCAGGTCATCCTGAAGAAGATTGATCTGCCGGTCGTGCCGAACGATCAGTGCCAGACGGCGCTGCGCACCACGCGCCTCGGGCCCAAGTTTAACCTGCACAAGAGCTTCATCTGTGCGGGCGGTGTGCCCGGCAAGGATACGTGCAAGGGGTGACGGCGGTTCGCCCGCTCGTCTGTCCCATCCCGAACTCGCCCCACCACTACTACCAAGAACGGGGCTGGGTCGCGTGGGGCATCGGCTGCGGCGAGAACGGCATTCCCCGGGGCGTGTACGCCAAACGTGGCCAAGTTTCCGCGGGCTGGATCGATCAGCACATGGTGCAGCGCAACTTCGGCACGGACAGCTACACGCCCTAGGTGGCGACAGTAAGAGTAAAGATTGCTTTTTTTTATGAACGGGCATGAAGAAGATGAAGAAAGGCTTGCAGCTTATCAGCTCGACACACGGGATTTGACCCCATC]
[+] EMBL BM609730 [CCGCCCACGCGTCCGCGGTGGTGGAGATTGTCGTCCATCCCGACTACTACAAGGGCGGTCTGCACAACGATGTGGCCCTACTGTTCCTTAACGCGCCCGTCGAACCGAACGAAAGCATCCAGACGGTGTGTCTGCCCCCGCAGGACATGGCGTTCAACCACGAGACGTGCTTTGCCAGCGGCTGGGGCAAGGACGTGTTCGGTAAGGCCGGCACGTACCAGGTCATCCTGAAGAAGATTGATCTGCCGGTCGTGCCGAACGATCAGTGCCAGACGGCGCTGCGCACCACGCGCCTCGGGCCCAAGTTTAACCTGCACAAGAGCTTCATCTGTGCGGGCGGTGTGCCCGGCAAGGATACGTGCAAGGGGTGACGGCGGTTCGCCCGCTCGTCTGTCCCATCCCGAACTCGCCCCACCACTACTACCAAGAACGGGGCTGGGTCGCGTGGGGCATCGGCTGCGGCGAGAACGGCATTCCCCGGGGCGTGTACGCCAAACGTGGCCAAGTTTCCGCGGGCTGGATCGATCAGCACATGGTGCAGCGCAACTTCGGCACGGACAGCTACACGCCCTAGGTGGCGACAGTAAGAGTAAAGATTGCTTTTTTTTATGAACGGGCATGAAGAAGATGAAGAAAGGCTTGCAGCTTATCAGCTCGACACACGGGATTTGACCCCATC]
consensusID : consensus_6015#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 308 fasta sequence
[AGATCGNGCCGAGGTCGAGTCGAGCGAGTACTGAGTGGATCATTCTCAGCAGCGCTTCGAACTTTTGTGTTCTCAACAACAACAAAACCCCGTATCAAATATGAAGCTGTTCGTCGTAGTGTCGTCCCTGCTGGCGTTGCACTGCTGCGCCATCGGCACGCTGTACGCAGCGTACGCCCATCAGCGGGCTGTACGCTGCCGTGCGCCCGTGGCCCCCGCACGTACATTGCGGGGCGGGCGGCGAAACTGGAACAGCCAAGTACCACGCCCAGACGAGGCTCGGGCAATACTCGTATTGGGATACAAAG]
[+] EMBL AL697076 [AGATCGNGCCGAGGTCGAGTCGAGCGAGTACTGAGTGGATCATTCTCAGCAGCGCTTCGAACTTTTGTGTTCTCAACAACAACAAAACCCCGTATCAAATATGAAGCTGTTCGTCGTAGTGTCGTCCCTGCTGGCGTTGCACTGCTGCGCCATCGGCACGCTGTACGCAGCGTACGCCCATCAGCGGGCTGTACGCTGCCGTGCGCCCGTGGCCCCCGCACGTACATTGCGGGGCGGGCGGCGAAACTGGAACAGCCAAGTACCACGCCCAGACGAGGCTCGGGCAATACTCGTATTGGGATACAAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6015#0 GTAACCGTGGAAGATGGCGTCTAGTTCAGTGAAGGTGCCTGTCGTTGTGCTGCTTCTTGC 60
consensus_6015#2 ------------------------------------------------------------
consensus_6015#1 ------------------------------------------------------------
consensus_6015#0 AATCGCCTGTACCGAAGAAGTCCCTTTTTCGGCAACAATTATGTGCTCCCGCAAGGTGCC 120
consensus_6015#2 ------------------------------------------------------------
consensus_6015#1 ----------------------------CCGCCCACGCGTCCGCGGTGGTGGAGATTGTC 32
consensus_6015#0 CGGCTTGCCAGTTCCGCCACCGCGGTGGTGCGCAATCTAGACGCCGCCCAGCTGCA-GGT 179
consensus_6015#2 ------------------------------------------------------------
consensus_6015#1 GTCCATCCCGACTACTACAAGGGCGGTCTGCACAACGATGTGGCCCTACTGTTCCTTAAC 92
consensus_6015#0 TCGTGGACTGAACCCAACGTCTTCACCCGGCTTACGCTGGCCGTCCAGGGTGTGGCACAG 239
consensus_6015#2 ------------------------------------------------------------
consensus_6015#1 GCGCCCGTCGAACCGAACGAAAGCATCCAGACGGTGTGTCTGCCCCCGCAGGACATGGCG 152
consensus_6015#0 TGGAACCGAAACCTATCCAGCTCGCTCGAGGTGTTGAAGGAGGCGTTTAACTACGATGTG 299
consensus_6015#2 ------------------------------------------------------------
consensus_6015#1 TTCAACCACGAGACGTGCTTTGCCAGCGGCTGGGGCAAGGACGTGTTCGGTAAGGCCGGC 212
consensus_6015#0 AATTCCAACACGGCCAGCTATCTGGAAAAGTTGCGGAATGCGTTC---GGTCAAAACGTG 356
consensus_6015#2 ----------------------------------AGATCGNGCCGA--GGTCGAGTCGAG 24
consensus_6015#1 ACGTACCAGGTCATCCTGAAGAAGATTGATCTGCCGGTCGTGCCGAACGATCAGTGCCAG 272
* * * * ** * *
consensus_6015#0 CAAGAGCTGGCGGAAGTACTC---GTGCGGTTGGGTGATGCGGTCCTCCCGGTTGCTGGA 413
consensus_6015#2 CGAGTACTGAGTGGATCATTCTCAGCAGCGCTTCGAACTTTTGTGTTCTCAACAACAACA 84
consensus_6015#1 ACGGCGCTG--CGCACCACGC---GCCTCGGGCCCAAGTTTAACCTGCACAAGAGCTTCA 327
* *** * * * * * * * * * * *
consensus_6015#0 CAGCCGC----TAAACACACAACAGTTTCT-GCAG-GTAGTGTCGGCAAATGGGACACTG 467
consensus_6015#2 AAACCCCGTATCAAATATGAAGCTGTTCGTCGTAGTGTCGTCCCTGCTGGCGTTGCACTG 144
consensus_6015#1 TCTGTGCGGGCGGTGTGCCCGGCAAGGATACGT---GCAAGGGGTGACGGCGGTTCGCCC 384
* * * * * * * *
consensus_6015#0 CAGCAGCTGCTGGATGTAGTGGAATACACTGTGCGATTATCAGGCGAGTACTCGACGAG- 526
consensus_6015#2 CTGCGCCATCGGCACGCTGT---ACGCAGCGTACGCCCATCAGCGGGCTGTACGCTGC-- 199
consensus_6015#1 GCTCGTCTGTCCCATCCCGA---ACTCGCCCCACCACTACTACCAAGAACGGGGCTGGGT 441
* * * * * * * * * * *
consensus_6015#0 TGTTAGCACCCT-GGTGGCAGCA-GTTCGTGCTGCCAACGACTTCCAAGCCCGATCG--T 582
consensus_6015#2 CGTGCGC-CCGT-GGCCCCCGCACGTACATTGCGGGGCGGGCGGCGAAACTGGAACA--G 255
consensus_6015#1 CGCGTGGGGCATCGGCTGCGGCGAGAACGGCATTCCCCGGGGCGTGTACGCCAAACGTGG 501
* * * * ** * ** * * * * * *
consensus_6015#0 ATGCCTTGCTAAGAAC-AAACCAGGCATCTATCAACACCAACGTTGACCGGTACAATACT 641
consensus_6015#2 CCAAGT-ACCACGCCC-AGACGAGGC-TCGGGCAATACTCGTATTGG--GATACAAAG-- 308
consensus_6015#1 CCAAGTTTCCGCGGGCTGGATCGATCAGCACATGGTGCAGCGCAACTTCGGCACGGACAG 561
* * * * * * * * * **
consensus_6015#0 GCATCAAACACATCGTTCTACCGCTTTCTAACGGCGGCCGACTCGCTTCTAACACACCTC 701
consensus_6015#2 ------------------------------------------------------------
consensus_6015#1 CTACACGCCCTAGGTGGCGACAGTAAGAGTAAAGATTGCTTTTTTTTATGAACGGGCATG 621
consensus_6015#0 AAAGACACGAACGAAAGCTTCGTCTTCCGCTGGCCGCTACTGTTTAGCGAGTCCGTACAT 761
consensus_6015#2 ------------------------------------------------------------
consensus_6015#1 AAGAAGATGAAGAAAGGCTTGCAGCTTATCAGCTCGACACACGGGATTTGACCCCATC-- 679
consensus_6015#0 CAGAAGCTAAATCTGCTCAATCATTCGATCGATCATTTGACGGGGAACTTGCTGCAGCGA 821
consensus_6015#2 ------------------------------------------------------------
consensus_6015#1 ------------------------------------------------------------
consensus_6015#0 ACGGTAACGGTCGCTCAGAATCTCGAGCGGACGAGTGCCCTGTTCAAAGAGGGCAATAAC 881
consensus_6015#2 ------------------------------------------------------------
consensus_6015#1 ------------------------------------------------------------
consensus_6015#0 CCACTCAGCTACCTGCGAGAAGAAACCGATCTGTACACGCGCGTTATGCTGGACGTACTG 941
consensus_6015#2 ------------------------------------------------------------
consensus_6015#1 ------------------------------------------------------------
consensus_6015#0 CGTGGCGCAAATTTCTGCGCAACTGGATTTGTTACGACGTTTAACGCGCTTCCAGCACAG 1001
consensus_6015#2 ------------------------------------------------------------
consensus_6015#1 ------------------------------------------------------------
consensus_6015#0 GTGACTTCACGTGTAGCGGCATGCCTAACCGAGCAGACGAATCTCGAAAATCAAGGCTCA 1061
consensus_6015#2 ------------------------------------------------------------
consensus_6015#1 ------------------------------------------------------------
consensus_6015#0 TCGCAGCTGGTGTCGCTTGCGAATGTTTGGATGATATCGTTGCTACCATTGACTTCAGGG 1121
consensus_6015#2 ------------------------------------------------------------
consensus_6015#1 ------------------------------------------------------------
consensus_6015#0 ACAAGTTCTTCCTGCTCGACCTTGCCAGCCATCTGTACTTCCAGCAGGTCCAGGAAGAGC 1181
consensus_6015#2 ------------------------------------------------------------
consensus_6015#1 ------------------------------------------------------------
consensus_6015#0 TGCCACTGTGCAATGATCGCGTATTGCAATTCGTTCGAAACGCTGGACTCCGTGAATCTT 1241
consensus_6015#2 ------------------------------------------------------------
consensus_6015#1 ------------------------------------------------------------
consensus_6015#0 GTCGGATCATGTCTGCCGCCGCCGATACGTCGACGTATTATCCACTAGCATGAAATTAAA 1301
consensus_6015#2 ------------------------------------------------------------
consensus_6015#1 ------------------------------------------------------------
consensus_6015#0 AAGATCAACAGGGAATAGCATTCGCAAGGCGTAACTTTATTGAATGGGGCAATGTTGAAC 1361
consensus_6015#2 ------------------------------------------------------------
consensus_6015#1 ------------------------------------------------------------
consensus_6015#0 CACTACTTCTTTGTCCACCGATTACGATAGCGCGTTCGTTTCTTGCTGTATATGCACATC 1421
consensus_6015#2 ------------------------------------------------------------
consensus_6015#1 ------------------------------------------------------------
consensus_6015#0 TCCTGAATGTTGTGATAGTTCAGGAAGTACCCGTTCTGCGCTACACACGCATTGAAGTTG 1481
consensus_6015#2 ------------------------------------------------------------
consensus_6015#1 ------------------------------------------------------------
consensus_6015#0 TGCTGTATCTCACTATCCACCAACGATTCCACCTGTTTGGCCGCATTATAGATTCTTCCA 1541
consensus_6015#2 ------------------------------------------------------------
consensus_6015#1 ------------------------------------------------------------
consensus_6015#0 TTAGCCCAATTGTTTTCGTAACCGTTCTGTAACAAATTAAATAAAAACCAAAATAAA 1598
consensus_6015#2 ---------------------------------------------------------
consensus_6015#1 ---------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||