These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6015#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1598 fasta sequence [GTAACCGTGGAAGATGGCGTCTAGTTCAGTGAAGGTGCCTGTCGTTGTGCTGCTTCTTGCAATCGCCTGTACCGAAGAAGTCCCTTTTTCGGCAACAATTATGTGCTCCCGCAAGGTGCCCGGCTTGCCAGTTCCGCCACCGCGGTGGTGCGCAATCTAGACGCCGCCCAGCTGCAGGTTCGTGGACTGAACCCAACGTCTTCACCCGGCTTACGCTGGCCGTCCAGGGTGTGGCACAGTGGAACCGAAACCTATCCAGCTCGCTCGAGGTGTTGAAGGAGGCGTTTAACTACGATGTGAATTCCAACACGGCCAGCTATCTGGAAAAGTTGCGGAATGCGTTCGGTCAAAACGTGCAAGAGCTGGCGGAAGTACTCGTGCGGTTGGGTGATGCGGTCCTCCCGGTTGCTGGACAGCCGCTAAACACACAACAGTTTCTGCAGGTAGTGTCGGCAAATGGGACACTGCAGCAGCTGCTGGATGTAGTGGAATACACTGTGCGATTATCAGGCGAGTACTCGACGAGTGTTAGCACCCTGGTGGCAGCAGTTCGTGCTGCCAACGACTTCCAAGCCCGATCGTATGCCTTGCTAAGAACAAACCAGGCATCTATCAACACCAACGTTGACCGGTACAATACTGCATCAAACACATCGTTCTACCGCTTTCTAACGGCGGCCGACTCGCTTCTAACACACCTCAAAGACACGAACGAAAGCTTCGTCTTCCGCTGGCCGCTACTGTTTAGCGAGTCCGTACATCAGAAGCTAAATCTGCTCAATCATTCGATCGATCATTTGACGGGGAACTTGCTGCAGCGAACGGTAACGGTCGCTCAGAATCTCGAGCGGACGAGTGCCCTGTTCAAAGAGGGCAATAACCCACTCAGCTACCTGCGAGAAGAAACCGATCTGTACACGCGCGTTATGCTGGACGTACTGCGTGGCGCAAATTTCTGCGCAACTGGATTTGTTACGACGTTTAACGCGCTTCCAGCACAGGTGACTTCACGTGTAGCGGCATGCCTAACCGAGCAGACGAATCTCGAAAATCAAGGCTCATCGCAGCTGGTGTCGCTTGCGAATGTTTGGATGATATCGTTGCTACCATTGACTTCAGGGACAAGTTCTTCCTGCTCGACCTTGCCAGCCATCTGTACTTCCAGCAGGTCCAGGAAGAGCTGCCACTGTGCAATGATCGCGTATTGCAATTCGTTCGAAACGCTGGACTCCGTGAATCTTGTCGGATCATGTCTGCCGCCGCCGATACGTCGACGTATTATCCACTAGCATGAAATTAAAAAGATCAACAGGGAATAGCATTCGCAAGGCGTAACTTTATTGAATGGGGCAATGTTGAACCACTACTTCTTTGTCCACCGATTACGATAGCGCGTTCGTTTCTTGCTGTATATGCACATCTCCTGAATGTTGTGATAGTTCAGGAAGTACCCGTTCTGCGCTACACACGCATTGAAGTTGTGCTGTATCTCACTATCCACCAACGATTCCACCTGTTTGGCCGCATTATAGATTCTTCCATTAGCCCAATTGTTTTCGTAACCGTTCTGTAACAAATTAAATAAAAACCAAAATAAA] [+] EMBL CNS09NXR [GTAACCGTGGAAGATGGCGTCTAGTTCAGTGAAGGTGCCTGTCGTTGTGCTGCTTCTTGCAATCGCCTGTACCGAAGAAGTCCCTTTTTCGGCAACAATTATGTGCTCCCGCAAGGTGCCCGGCTTGCCAGTTCCGCCACCGCGGTGGTGCGCAATCTAGACGCCGCCCAGCTGCAGGTTCGTGGACTGAACCCAACGTCTTCACCCGGCTTACGCTGGCCGTCCAGGGTGTGGCACAGTGGAACCGAAACCTATCCAGCTCGCTCGAGGTGTTGAAGGAGGCGTTTAACTACGATGTGAATTCCAACACGGCCAGCTATCTGGAAAAGTTGCGGAATGCGTTCGGTCAAAACGTGCAAGAGCTGGCGGAAGTACTCGTGCGGTTGGGTGATGCGGTCCTCCCGGTTGCTGGACAGCCGCTAAACACACAACAGTTTCTGCAGGTAGTGTCGGCAAATGGGACACTGCAGCAGCTGCTGGATGTAGTGGAATACACTGTGCGATTATCAGGCGAGTACTCGACGAGTGTTAGCACCCTGGTGGCAGCAGTTCGTGCTGCCAACGACTTCCAAGCCCGATCGTATGCCTTGCTAAGAACAAACCAGGCATCTATCAACACCAACGTTGACCGGTACAATACTGCATCAAACACATCGTTCTACCGCTTTCTAACGGCGGCCGACTCGCTTCTAACACACCTCAAAGACACGAACGAAAGCTTCGTCTTCCGCTGGCCGCTACTGTTTAGCGAGTCCGTACATCAGA ] [+] EMBL CNS097J5 [ ACCGAAGAAGTCCCTTTTTCGGCAACAATTATGTGCTCCCGCAAGGTGCCCGGCTTGCCAGTTCCGCCACCGCGGTGGTGCGCAATCTAGACGCCGCCCAGCTGCAGGTTCGTGGACTGAACCCAACGTCTTCACCCGGCTTACGCTGGCCGTCCAGGGTGTGGCACAGTGGAACCGAAACCTATCCAGCTCGCTCGAGGTGTTGAAGGAGGCGTTTAACTACGATGTGAATTCCAACACGGCCAGCTATCTGGAAAAGTTGCGGAATGCGTTCGGTCAAAACGTGCAAGAGCTGGCGGAAGTACTCGTGCGGTTGGGTGATGCGGTCCTCCCGGTTGCTGGACAGCCGCTAAACACACAACAGTTTCTGCAGGTAGTGTCGGCAAATGGGACACTGCAGCAGCTGCTGGATGTAGTGGAATACACTGTGCGATTATCAGGCGAGTACTCGACGAGTGTTAGCACCCTGGTGGCAGCAGTTCGTGCTGCCAACGACTTCCAAGCCCGATCGTATGCCTTGCTAAGAACAAACCAGGCATCTATCAACACCAACGTTGACCGGTACAATACTGCATCAAACACATCGTTCTACCGCTTTCTAACGGCGGCCGACTCGCTTCTAACACACCTCAAAGACACGAACGAAAGCTTCGTCTTCCGCTGGCCGCTACTGTTTAGCGAGTGCGTACATCAGAAGCTAAATCTGCTCAATCATTCGATCGATCATTTGACGGGGAACTTGCTGCAGCGAACGGTAACGGTCGCTCAGAATCTCGAGCGGACGAGTGCCCTGTTCAAAGAGGGCAATAACCCACTCAGCTACCTGCGAGAAGAAACCGATCTGTACACGCGCGTTATGCTGGACGTACTGCGTGGCGCAA ] [-] EMBL CNS08WFR [ CGTCTTCCGCTGGCCGTTACTGTTTAGCGAGTCCGTGCATCAGAAGCTAAATCTGCTCAATCATTCCATCGATCATTTGACGGGGAACTTGCTGCAGCGAACGGTAACGGTCGCGCAGAATCTCGAGCGCACGAGTGCCCTGTTCAAAGAGGGCAATAACCCACTCAGCTACCTGCGAGAAGAAACCGATCTGTAAACGCGCGTCATGCTGGACGTACTGAGTGGTGAAAATTTCTGCGCAACTGGATTTGTTACGACGTTTAACGCGCTTCCAGCACAGGTGACTTCACGTGTAGCGGCATGCCTAACCGAGCAGACGAATCTCGAAAATCAAGGCTCATCGCAGCTGGTGTCGCTTGCGAATGTTTGGATGATATCGTTGCTACCATTGACTTCAGGGACAAGTTCTTCCTGCTCGACCTTGCCAGCCATCTGTACTTCCAGCAGGTCCAGGAAGAGCTGCCACTGTGCAATGATCGCGTATTGCAATTCGTTCGAAACGCTGGACTCCGTGAATCTTGTCGGATCATGTCTGCCGCCGCCGATACGTCGACGTATTATCCACTAGCATGAAATTAAAAAGATCAACAGGGAATAGCATTCGCAAGGCGTAACTTTATTGAATGGGGCAATGTTGAACCACTACTTCTTTGTCCACCGATTACGATAGCGCGTTCGTTTCTTGCTGTATATGCACATCTCCTGAATGTTGTGATAGTTCAGGAAGTACCCGTTCTGCGCTACACACGCATTGAAGTTGTGCTGTATCTCACTATCCACCAACGATTCCACCTGTTTGGCCGCATTATAGATTCTTCCATTAGCCCAATTGTTTTCGTAACCGTTCTGTAACAAATTAAATAAAAACCAAAATAAA] consensusID : consensus_6015#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence [CCGCCCACGCGTCCGCGGTGGTGGAGATTGTCGTCCATCCCGACTACTACAAGGGCGGTCTGCACAACGATGTGGCCCTACTGTTCCTTAACGCGCCCGTCGAACCGAACGAAAGCATCCAGACGGTGTGTCTGCCCCCGCAGGACATGGCGTTCAACCACGAGACGTGCTTTGCCAGCGGCTGGGGCAAGGACGTGTTCGGTAAGGCCGGCACGTACCAGGTCATCCTGAAGAAGATTGATCTGCCGGTCGTGCCGAACGATCAGTGCCAGACGGCGCTGCGCACCACGCGCCTCGGGCCCAAGTTTAACCTGCACAAGAGCTTCATCTGTGCGGGCGGTGTGCCCGGCAAGGATACGTGCAAGGGGTGACGGCGGTTCGCCCGCTCGTCTGTCCCATCCCGAACTCGCCCCACCACTACTACCAAGAACGGGGCTGGGTCGCGTGGGGCATCGGCTGCGGCGAGAACGGCATTCCCCGGGGCGTGTACGCCAAACGTGGCCAAGTTTCCGCGGGCTGGATCGATCAGCACATGGTGCAGCGCAACTTCGGCACGGACAGCTACACGCCCTAGGTGGCGACAGTAAGAGTAAAGATTGCTTTTTTTTATGAACGGGCATGAAGAAGATGAAGAAAGGCTTGCAGCTTATCAGCTCGACACACGGGATTTGACCCCATC] [+] EMBL BM609730 [CCGCCCACGCGTCCGCGGTGGTGGAGATTGTCGTCCATCCCGACTACTACAAGGGCGGTCTGCACAACGATGTGGCCCTACTGTTCCTTAACGCGCCCGTCGAACCGAACGAAAGCATCCAGACGGTGTGTCTGCCCCCGCAGGACATGGCGTTCAACCACGAGACGTGCTTTGCCAGCGGCTGGGGCAAGGACGTGTTCGGTAAGGCCGGCACGTACCAGGTCATCCTGAAGAAGATTGATCTGCCGGTCGTGCCGAACGATCAGTGCCAGACGGCGCTGCGCACCACGCGCCTCGGGCCCAAGTTTAACCTGCACAAGAGCTTCATCTGTGCGGGCGGTGTGCCCGGCAAGGATACGTGCAAGGGGTGACGGCGGTTCGCCCGCTCGTCTGTCCCATCCCGAACTCGCCCCACCACTACTACCAAGAACGGGGCTGGGTCGCGTGGGGCATCGGCTGCGGCGAGAACGGCATTCCCCGGGGCGTGTACGCCAAACGTGGCCAAGTTTCCGCGGGCTGGATCGATCAGCACATGGTGCAGCGCAACTTCGGCACGGACAGCTACACGCCCTAGGTGGCGACAGTAAGAGTAAAGATTGCTTTTTTTTATGAACGGGCATGAAGAAGATGAAGAAAGGCTTGCAGCTTATCAGCTCGACACACGGGATTTGACCCCATC] consensusID : consensus_6015#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 308 fasta sequence [AGATCGNGCCGAGGTCGAGTCGAGCGAGTACTGAGTGGATCATTCTCAGCAGCGCTTCGAACTTTTGTGTTCTCAACAACAACAAAACCCCGTATCAAATATGAAGCTGTTCGTCGTAGTGTCGTCCCTGCTGGCGTTGCACTGCTGCGCCATCGGCACGCTGTACGCAGCGTACGCCCATCAGCGGGCTGTACGCTGCCGTGCGCCCGTGGCCCCCGCACGTACATTGCGGGGCGGGCGGCGAAACTGGAACAGCCAAGTACCACGCCCAGACGAGGCTCGGGCAATACTCGTATTGGGATACAAAG] [+] EMBL AL697076 [AGATCGNGCCGAGGTCGAGTCGAGCGAGTACTGAGTGGATCATTCTCAGCAGCGCTTCGAACTTTTGTGTTCTCAACAACAACAAAACCCCGTATCAAATATGAAGCTGTTCGTCGTAGTGTCGTCCCTGCTGGCGTTGCACTGCTGCGCCATCGGCACGCTGTACGCAGCGTACGCCCATCAGCGGGCTGTACGCTGCCGTGCGCCCGTGGCCCCCGCACGTACATTGCGGGGCGGGCGGCGAAACTGGAACAGCCAAGTACCACGCCCAGACGAGGCTCGGGCAATACTCGTATTGGGATACAAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6015#0 GTAACCGTGGAAGATGGCGTCTAGTTCAGTGAAGGTGCCTGTCGTTGTGCTGCTTCTTGC 60 consensus_6015#2 ------------------------------------------------------------ consensus_6015#1 ------------------------------------------------------------ consensus_6015#0 AATCGCCTGTACCGAAGAAGTCCCTTTTTCGGCAACAATTATGTGCTCCCGCAAGGTGCC 120 consensus_6015#2 ------------------------------------------------------------ consensus_6015#1 ----------------------------CCGCCCACGCGTCCGCGGTGGTGGAGATTGTC 32 consensus_6015#0 CGGCTTGCCAGTTCCGCCACCGCGGTGGTGCGCAATCTAGACGCCGCCCAGCTGCA-GGT 179 consensus_6015#2 ------------------------------------------------------------ consensus_6015#1 GTCCATCCCGACTACTACAAGGGCGGTCTGCACAACGATGTGGCCCTACTGTTCCTTAAC 92 consensus_6015#0 TCGTGGACTGAACCCAACGTCTTCACCCGGCTTACGCTGGCCGTCCAGGGTGTGGCACAG 239 consensus_6015#2 ------------------------------------------------------------ consensus_6015#1 GCGCCCGTCGAACCGAACGAAAGCATCCAGACGGTGTGTCTGCCCCCGCAGGACATGGCG 152 consensus_6015#0 TGGAACCGAAACCTATCCAGCTCGCTCGAGGTGTTGAAGGAGGCGTTTAACTACGATGTG 299 consensus_6015#2 ------------------------------------------------------------ consensus_6015#1 TTCAACCACGAGACGTGCTTTGCCAGCGGCTGGGGCAAGGACGTGTTCGGTAAGGCCGGC 212 consensus_6015#0 AATTCCAACACGGCCAGCTATCTGGAAAAGTTGCGGAATGCGTTC---GGTCAAAACGTG 356 consensus_6015#2 ----------------------------------AGATCGNGCCGA--GGTCGAGTCGAG 24 consensus_6015#1 ACGTACCAGGTCATCCTGAAGAAGATTGATCTGCCGGTCGTGCCGAACGATCAGTGCCAG 272 * * * * ** * * consensus_6015#0 CAAGAGCTGGCGGAAGTACTC---GTGCGGTTGGGTGATGCGGTCCTCCCGGTTGCTGGA 413 consensus_6015#2 CGAGTACTGAGTGGATCATTCTCAGCAGCGCTTCGAACTTTTGTGTTCTCAACAACAACA 84 consensus_6015#1 ACGGCGCTG--CGCACCACGC---GCCTCGGGCCCAAGTTTAACCTGCACAAGAGCTTCA 327 * *** * * * * * * * * * * * consensus_6015#0 CAGCCGC----TAAACACACAACAGTTTCT-GCAG-GTAGTGTCGGCAAATGGGACACTG 467 consensus_6015#2 AAACCCCGTATCAAATATGAAGCTGTTCGTCGTAGTGTCGTCCCTGCTGGCGTTGCACTG 144 consensus_6015#1 TCTGTGCGGGCGGTGTGCCCGGCAAGGATACGT---GCAAGGGGTGACGGCGGTTCGCCC 384 * * * * * * * * consensus_6015#0 CAGCAGCTGCTGGATGTAGTGGAATACACTGTGCGATTATCAGGCGAGTACTCGACGAG- 526 consensus_6015#2 CTGCGCCATCGGCACGCTGT---ACGCAGCGTACGCCCATCAGCGGGCTGTACGCTGC-- 199 consensus_6015#1 GCTCGTCTGTCCCATCCCGA---ACTCGCCCCACCACTACTACCAAGAACGGGGCTGGGT 441 * * * * * * * * * * * consensus_6015#0 TGTTAGCACCCT-GGTGGCAGCA-GTTCGTGCTGCCAACGACTTCCAAGCCCGATCG--T 582 consensus_6015#2 CGTGCGC-CCGT-GGCCCCCGCACGTACATTGCGGGGCGGGCGGCGAAACTGGAACA--G 255 consensus_6015#1 CGCGTGGGGCATCGGCTGCGGCGAGAACGGCATTCCCCGGGGCGTGTACGCCAAACGTGG 501 * * * * ** * ** * * * * * * consensus_6015#0 ATGCCTTGCTAAGAAC-AAACCAGGCATCTATCAACACCAACGTTGACCGGTACAATACT 641 consensus_6015#2 CCAAGT-ACCACGCCC-AGACGAGGC-TCGGGCAATACTCGTATTGG--GATACAAAG-- 308 consensus_6015#1 CCAAGTTTCCGCGGGCTGGATCGATCAGCACATGGTGCAGCGCAACTTCGGCACGGACAG 561 * * * * * * * * * ** consensus_6015#0 GCATCAAACACATCGTTCTACCGCTTTCTAACGGCGGCCGACTCGCTTCTAACACACCTC 701 consensus_6015#2 ------------------------------------------------------------ consensus_6015#1 CTACACGCCCTAGGTGGCGACAGTAAGAGTAAAGATTGCTTTTTTTTATGAACGGGCATG 621 consensus_6015#0 AAAGACACGAACGAAAGCTTCGTCTTCCGCTGGCCGCTACTGTTTAGCGAGTCCGTACAT 761 consensus_6015#2 ------------------------------------------------------------ consensus_6015#1 AAGAAGATGAAGAAAGGCTTGCAGCTTATCAGCTCGACACACGGGATTTGACCCCATC-- 679 consensus_6015#0 CAGAAGCTAAATCTGCTCAATCATTCGATCGATCATTTGACGGGGAACTTGCTGCAGCGA 821 consensus_6015#2 ------------------------------------------------------------ consensus_6015#1 ------------------------------------------------------------ consensus_6015#0 ACGGTAACGGTCGCTCAGAATCTCGAGCGGACGAGTGCCCTGTTCAAAGAGGGCAATAAC 881 consensus_6015#2 ------------------------------------------------------------ consensus_6015#1 ------------------------------------------------------------ consensus_6015#0 CCACTCAGCTACCTGCGAGAAGAAACCGATCTGTACACGCGCGTTATGCTGGACGTACTG 941 consensus_6015#2 ------------------------------------------------------------ consensus_6015#1 ------------------------------------------------------------ consensus_6015#0 CGTGGCGCAAATTTCTGCGCAACTGGATTTGTTACGACGTTTAACGCGCTTCCAGCACAG 1001 consensus_6015#2 ------------------------------------------------------------ consensus_6015#1 ------------------------------------------------------------ consensus_6015#0 GTGACTTCACGTGTAGCGGCATGCCTAACCGAGCAGACGAATCTCGAAAATCAAGGCTCA 1061 consensus_6015#2 ------------------------------------------------------------ consensus_6015#1 ------------------------------------------------------------ consensus_6015#0 TCGCAGCTGGTGTCGCTTGCGAATGTTTGGATGATATCGTTGCTACCATTGACTTCAGGG 1121 consensus_6015#2 ------------------------------------------------------------ consensus_6015#1 ------------------------------------------------------------ consensus_6015#0 ACAAGTTCTTCCTGCTCGACCTTGCCAGCCATCTGTACTTCCAGCAGGTCCAGGAAGAGC 1181 consensus_6015#2 ------------------------------------------------------------ consensus_6015#1 ------------------------------------------------------------ consensus_6015#0 TGCCACTGTGCAATGATCGCGTATTGCAATTCGTTCGAAACGCTGGACTCCGTGAATCTT 1241 consensus_6015#2 ------------------------------------------------------------ consensus_6015#1 ------------------------------------------------------------ consensus_6015#0 GTCGGATCATGTCTGCCGCCGCCGATACGTCGACGTATTATCCACTAGCATGAAATTAAA 1301 consensus_6015#2 ------------------------------------------------------------ consensus_6015#1 ------------------------------------------------------------ consensus_6015#0 AAGATCAACAGGGAATAGCATTCGCAAGGCGTAACTTTATTGAATGGGGCAATGTTGAAC 1361 consensus_6015#2 ------------------------------------------------------------ consensus_6015#1 ------------------------------------------------------------ consensus_6015#0 CACTACTTCTTTGTCCACCGATTACGATAGCGCGTTCGTTTCTTGCTGTATATGCACATC 1421 consensus_6015#2 ------------------------------------------------------------ consensus_6015#1 ------------------------------------------------------------ consensus_6015#0 TCCTGAATGTTGTGATAGTTCAGGAAGTACCCGTTCTGCGCTACACACGCATTGAAGTTG 1481 consensus_6015#2 ------------------------------------------------------------ consensus_6015#1 ------------------------------------------------------------ consensus_6015#0 TGCTGTATCTCACTATCCACCAACGATTCCACCTGTTTGGCCGCATTATAGATTCTTCCA 1541 consensus_6015#2 ------------------------------------------------------------ consensus_6015#1 ------------------------------------------------------------ consensus_6015#0 TTAGCCCAATTGTTTTCGTAACCGTTCTGTAACAAATTAAATAAAAACCAAAATAAA 1598 consensus_6015#2 --------------------------------------------------------- consensus_6015#1 --------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||