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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6019#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 931 fasta sequence
[CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCTTTAACGAAGCGCAGTCAAGATGAAAGCTAAAGGAGTGCTGAAAGAATACCAGGTGATCGGGCGCAAGCTGCCCTCGGAGAAGGAGAAGAACCCTCCGCTCTTCAAGATGCACATCTTCGCCCCGGACCACATCGTGGCCAAGTCGCGCTTCTGGTACTTCCTGCG-TCAGCTGCGCAAGTTCAAGAAGGCAACCGGCGAGATCGTCTCGGTGAAGCGCATCCTGGAGAAGACGCCGCTGAAGGTGAAGAACTTCGGCATCTGGTTGCGTTACGATTCGCGCTCCGGTACGCACAACATGTACCGCGAGTACCGTGACCTGACCGTTGGCGGTGCCGTCACGCAGTGCTACAGTGACATGGCCTCCCGTCACCGTGCCCGTGCCCACTCGATCCAGATCATCAAGGTGGAATCGATCGCCGCGTCCAAGACGCGCCGTGCGCACATCAAGCAGTTCCACAACTCGAAGATCCGATTCCCGCTGGTGCAGCGATACCACCACAAGCGCTACCGGAAGCTGTTCTCTTACCGCCGCCCGGAGACCTTCTACCAGTAAGGCGGAAGAAGCAGCGGCGCACGGCACTTTTTGAGAAGACTGTCATCATACGTATCGCCGCCACAGCGCCACGGATTCGTCCGCATTCAGCCGCGTTGTGTTCGCGTTTGGAGTGAGTGCTGCTGCTGCGTGTGCACGATCGGTTGTTGTTGTGGTGGTGCGTGTTTACGGTGCGGTGTGATGATGATGCTGTGTGTATTCCTCTGGTTGAAGTGTTAATTTGCACCGGAAATACAGTTGCGGCCCCCCTTCTCTTTCCATCCACCCCAGGGGGGGAAGTCTTTGAGCAAAGTTGAAACAAAAGGAGAGGTGAATAAAAGTTGGTTTTGCCGCTCCA]
[+] EMBL BM645649 [CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCTTTAACGAAGCGCAGTCAAGATGAAAGCTAAAGGAGTGCTGAAAGAATACCAGGTGATCGGGCGCAAGCTGCCCTCGGAGAAGGAGAAGAACCCTCCGCTCTTCAAGATGCACATCTTCGCCCCGGACCACATCGTGGCCAAGTCGCGCTTCTGGTACTTCCTGCG TCAGCTGCGCAAGTTCAAGAAGGCAACCGGCGAGATCGTCTCGGTGAAGCGCATCCTGGAGAAGACGCCGCTGAAGGTGAAGAACTTCGGCATCTGGTTGCGTTACGATTCGCGCTCCGGTACGCACAACATGTACCGCGAGTACCGTGACCTGACCGTTGGCGGTGCCGTCACGCAGTGCTACAGTGACATGGCCTCCCGTCACCGTGCCCGTGCCCACTCGATCCAGATCATCAAGGTGGAATCGATCGCCGCGTCCAAGACGCGCCGTGCGCACATCAAGCAGTTCCACAACTCGAAGATCCGATTCCCGCTGGTGCAGCGATACCACCACAAGCGCTACCGGAAGCTGTTCTCTTACCGCCGCCCGGAGACCTTCTACCAGTAAGGCGGAAGAAGCAGCGGCGCACGGCACT ]
[+] EMBL BM607332 [ ccGCGGACGCGTGGGCTTTAACGAAGCGCAGTCAAGATGAAAGCTAAAGGAGTGCTGAAAGAATACCAGGTGATCGGGCGCAAGCTGCCCTCGGAGAAGGAGAAGAACCCTCCGCTCTTCAAGATGCACATCTTCGCCCCGGACCACATCGTGGCCAAGTCGCGCTTCTGGTACTTCCTGCG TCAGCTGCGCAAGTTCAAGAAGGCAACCGGCGAGATCGTCTCGGTGAAGCGCATCCTGGAGAAGACGCCGCTGAAGGTGAAGAACTTCGGCATCTGGTTGCGTTACGATTCGCGCTCCGGTACGCACAACATGTACCGCGAGTACCGTGACCTGACCGTTGGCGGTGCCGTCACGCAGTGCTACAGTGACATGGCCTCCCGTCACCGTGCCCGTGCCCACTCGATCCAGATCATCAAGGTGGAATCGATCGCCGCGTCCAAGACGCGCCGTGCGCACATCAAGCAGTTCCACAACTCGAAGATCCGATTCCCGCTGGTGCAGCGATACCACCACAAGCGCTACCGGAAGCTGTTCTCTTACCGCCGCCCGGAGACCTTCTACCAGTAAGGCGGAAGAAGCAGCGGCGCACGGCACTTTTTGAGAAGACTGTCATCATACGTATCGCCGCCACAGCGCCACGGATTCGTCCGCATTCAGCCGCG ]
[-] EMBL CNS08Z1I [ GTGCTGAAAGAATACCAGGTGATCGGGCGCAAGCTGCCCTCGGAGAAGGAGAAGAACCCTCCGCTCTTCAAGATGCACATCTTCGCCCCGGACCACATCGTGGCCAAGTCGCGCTTCTGGTACTTCCTGCGTTCAG TGCGCAAGTTCAAGAAGGCAACCGGCGAGATCGTCTCGGTGAAGCGCATCCTGGAGAAGAAGCCGCTGAAGGTGAAGAACTTCGGCATCTGGTTGCGTTACGATTCGCGCTCCGGTACGCACAACATGTACCGCGAGTACCGTGACCTGACCGTTGGCGGTGCCGTCACGCAGTGCTACAGTGACATGGCCTCCCGTCACCGTGCCCGTGCCCACTCGATCCAGATCATCAAGGTGGAATCGATCGCCGCGTCCAAGACGCGCCGTGCGCACATCAAGCAGTTCCACAACTCGAAGATCCGATTCCCGCTGGTGCAGCGATACCACCACAAGCGCTACCGGAAGCTGTTCTCTTACCGCCGCCCGGAGACCTTCTACCAGTAAGGCGGAAGAAGCAGCGGCGCACGGCACTTTTT TGAAGACTGTCATCATACGTATCGCCGCCACAGCGCCACGGATTCGTCCGCA TCAGCCGCGTTGTGTTCGCGTTTGGAGTGAGTGCTGCTGCTGCGTGTGCACGATCGGTTGTTGTTGTGGTGGTGCGTGTTTACGGTGCGGTGTGATGATGATGCTGTGTGTATTCCTCTGGTTGAAGTGTTAATTTGCACCGGAAATACAGTTGCGGCCCCCCTTCTCTTTCCATCCACCCCAGGGGGGGAAGTCTTTGAGCAAAGTTGAAACAAAAGGAGAGGTGAATAAAAGTTGGTTTTGCCGCTCCA]
consensusID : consensus_6019#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 873 fasta sequence
[ATTTTGGGTTCATTTATTCCATTCTTGTCGCACTGTGAAGAGTAGTTGGTAGAAACTTAAAACAGAAGCCAAAAAAACGCACATACACACATTTAGATCTTGTTGAATGCGGCAATGTCCACAGACTGTACGTAATCCTCGAACTCCTGAATCGTCTCCGTCAGCAGATCGACCGAAACCTTGTCGTCCTCGATAACGCAGCAGATCTGCAGCTTCTGGATGCCATAGCCGACCGGTACGAGCTTGGCCGCTCCCCACAACAGTTCGTCCATCTCGATGCTGCGTACGTTCTTCTCCATTTCCTTCATGTCGGTTTCCTTCATGTCGGTTTCGTCATCCCACGGTTTGACGTCCAAAATGATGGAGCTCTTGGCGATGAGGGCAGGTTTCTTCGACTTCTTTGCATTGTATGCTGCCAGGCGCTCTTCCTTCAGTTTGGCCGCCTCGGCGCTCTCTTCCTCATCCTCCGATCCGAACAGATCCACATCATCATCATCGTCTCCGCCGGCCGGTGCGGCGGCGACAGTTGGCTTGCCGCCGGCTACCTGTGGCAGGGCCTGACCGCCCCATTCCGAGCGCTCCTTAGCGTTGAACGATGCGATGTGGTTGTACCAGCGCAGCGGTGCCACATGGGGTAGCGGCGGGAGCTTTGCCCAGGGCATCGAACACGGACAGATCAGCCTTCGATGGAGCGTATCCTTCGACATAGCTGTTATCAGCCAGGAATTTGTCCAATTCCTTCAGTCCGTTGGCGGTCTTAACATCTCCGAATGCCATTTTGAGCAAATTTCCTTAAAAATCTCGGAACAGAGCGATCGGTCACGACGTGTGCCCGATGAAGATTTGACGGAAAAAAGCTAGTTGGCCAACAGT]
[+] EMBL CNS097OY [ATTTTGGGTTCATTTATTCCATTCTTGTCGCACTGTGAAGAGTAGTTGGTAGAAACTTAAAACAGAAGCCAAAAAAACGCACATACACACATTTAGATCTTGTTGAATGCGGCAATGTCCACAGACTGTACGTAATCCTCGAACTCCTGAATCGTCTCCGTCAGCAGATCGACCGAAACCTTGTCGTCCTCGATAACGCAGCAGATCTGCAGCTTCTGGATGCCATAGCCGACCGGTACGAGCTTGGCCGCTCCCCACAACAGTTCGTCCATCTCGATGCTGCGTACGTTCTTCTCCATTTCCTTCATGTCGGTTTCCTTCATGTCGGTTTCGTCATCCCACGGTTTGACGTCCAAAATGATGGAGCTCTTGGCGATGAGGGCAGGTTTCTTCGACTTCTTTGCATTGTATGCTGCCAGGCGCTCTTCCTTCAGTTTGGCCGCCTCGGCGCTCTCTTCCTCATCCTCCGATCCGAACAGATCCACATCATCATCATCGTCTCCGCCGGCCGGTGCGGCGGCGACAGTTGGCTTGCCGCCGGCTACCTGTGGCAGGGCCTGACCGCCCCATTCCGAGCGCTCCTTAGCGTTGAACGATGCGATGTGGTTGTACCAGCGCAGCGGTGCCACATGGGGTAGCGGCGGGAGCTTTGCCCAGGGCATCGAACACGGACAGATCAGCCTTCGATGGAGCGTATCCTTCGACATAGCTGTTATCAGCCAGGAATTTGTCCAATTCCTTCAGTCCGTTGGCGGTCTTAACATCTCCGAATGCCATTTTGAGCAAATTTCCTTAAAAATCTCGGAACAGAGCGATCGGTCACGACGTGTGCCCGATGAAGATTTGACGGAAAAAAGCTAGTTGGCCAACAGT]
consensusID : consensus_6019#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 608 fasta sequence
[CCGCCCACGCGTCCGGTTGAGGTTAAGAAGGTGGTGAACCCGTTGTTCGAGAAACGTGTTAAGAACTACGGCATCGGCCAGAATGTGCAGCCGAAGCGCGACCTGAGCCGGTTCGTCAAATGGCCGAAGTACATCCGCATCCAGCGCCACCGCGCGATCCTGCAGAAGCGGCTGAAGATCCCGCCGCCGATTAACCAGTTCACCCAGACGCTGGACAAGCCGACGGCCCAGCAGGTGATGAAGATGCTGGAGAAGTACCGCCCGGAGAACCCGATCGCTCGCGTCCAGCGCCTGAAGGCGAAGGCGGAAGCGAAGGCGGCCGGCAAGGAGGAACCGCCATCGAAGCGGGCCAACCAGCTGCGCCAGGGCATCAACTCCGTGGTGAAGATGGTCGAGCAGAAGAAGGCCCAGCTGGTGATCATTGCGCACGACGTCGATCCGATCGAGCTGGTCGTCTACCTGCCGGCGCTCTGCCGCAAGATGGGCGTGCCGTACTGCATCATCAAGGGTAAGGCGCGCCTCGGCACGCTGGTGTACCGCAAGACGTGCACCTGCGTTGCGCTGAGCCAGGTCGAGAACGCGGACAAGCCCAACCTGGCCAAGCTGGT]
[+] EMBL BM604249 [CCGCCCACGCGTCCGGTTGAGGTTAAGAAGGTGGTGAACCCGTTGTTCGAGAAACGTGTTAAGAACTACGGCATCGGCCAGAATGTGCAGCCGAAGCGCGACCTGAGCCGGTTCGTCAAATGGCCGAAGTACATCCGCATCCAGCGCCACCGCGCGATCCTGCAGAAGCGGCTGAAGATCCCGCCGCCGATTAACCAGTTCACCCAGACGCTGGACAAGCCGACGGCCCAGCAGGTGATGAAGATGCTGGAGAAGTACCGCCCGGAGAACCCGATCGCTCGCGTCCAGCGCCTGAAGGCGAAGGCGGAAGCGAAGGCGGCCGGCAAGGAGGAACCGCCATCGAAGCGGGCCAACCAGCTGCGCCAGGGCATCAACTCCGTGGTGAAGATGGTCGAGCAGAAGAAGGCCCAGCTGGTGATCATTGCGCACGACGTCGATCCGATCGAGCTGGTCGTCTACCTGCCGGCGCTCTGCCGCAAGATGGGCGTGCCGTACTGCATCATCAAGGGTAAGGCGCGCCTCGGCACGCTGGTGTACCGCAAGACGTGCACCTGCGTTGCGCTGAGCCAGGTCGAGAACGCGGACAAGCCCAACCTGGCCAAGCTGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6019#0 CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGCTTTAACGAAGCGCAGTCAAG 60
consensus_6019#1 --------------------------------ATTTTGGGTTCATTTATTC-CATTCTTG 27
consensus_6019#2 ------------------------------------------------------------
consensus_6019#0 ATGAAAGCTAAAGGAGTGCTGAAAGAATACCAGGTGATCGGGCGCAAGCTGCCCTCGGAG 120
consensus_6019#1 TCGCACTGTGAAGAGTAGTTGGTAGAA-ACTTAAAACAGAAGCCAAAAAAACGCACATAC 86
consensus_6019#2 --------------------------------------------------CCGCCCACGC 10
* * *
consensus_6019#0 AAGGAGAAGAACCCTCCGCTCTTCAAGATGCACATCTTCGCCCCGGACCACATCGTGGCC 180
consensus_6019#1 ACACATTTAGATCTTG-----TTGAATGCGGCAATGTCCAC---AGACTGTA-CGTAATC 137
consensus_6019#2 GTCCGGTTGAGGTTAA-------GAAGGTGGTGAACCCGTTGTTCGAGAAACGTGTTAAG 63
** * * ** **
consensus_6019#0 AAGTCGCGCTTCTGGTACTTCCTGCGTCAGCTGCGCAAGTTCAAGAAGGCAACCGGCGAG 240
consensus_6019#1 C--TCGAACTCCTGA-ATCGTCTCCGTCAGCAGATCGACCGAAACCTTGTCGTCCTCGAT 194
consensus_6019#2 AACTACGGCATCGGCCAGAATGTGCAGCCGAAGCGCGACCTGAGCCGGTTCGTCAA-ATG 122
* * * * * * * * * * * * * *
consensus_6019#0 ATCGTCTCGGTGAAGCGCATCCTGGAGAAGACGCCGCTGAAGGTGAAGAACTTCGGCATC 300
consensus_6019#1 AACGCAGCA--GATCTGCAGCTTCTGGATGCCATAGCCGACCGGTACGAGCTTGGCCGCT 252
consensus_6019#2 GCCGAAGTA--CATCCGCATCCAGCGCCACCGCGCGATCCTGCAGAAGCGGCTGAAGATC 180
** * *** * * * * *
consensus_6019#0 TGGTTGCGTTACGATTCGCGCTCCGGTACGCACAACATGTACCGCGAGTACCGTGACCTG 360
consensus_6019#1 ---CCCCACAACAGTTCGTCCATCTCGATGCTGCGTACGTTCTTCT----CCATTTCCTT 305
consensus_6019#2 CCGCCGCCGATTAACCAGTTCACCCAGACGCTGGACAAGC----------CGACGGCCCA 230
* * * * * ** * * * **
consensus_6019#0 ACCGTTGGCGGTGCCGTCACG-CAGTGCTACAGTGACATGGCCTCCCGTC-ACCGTGCCC 418
consensus_6019#1 CATGTCGGT--TTCCTTCATGTCGGTTTCGTCATCCCACGGTTTGACGTCCAAAATGATG 363
consensus_6019#2 GCAGGTGATGAAGATGCTGGAGAAGTACCGCC----CGGAGAACCCGATCGCTCGCGTCC 286
* * ** * * ** *
consensus_6019#0 GTGCCCACTCGATCCAGATCATCAAGGTGGAATCGATCGCCGCGTCCAAGACGC-GCCGT 477
consensus_6019#1 GAGCTCTTGGCGATGAGGGCA----GGTTTCTTCGACTTCTTTGCATTGTATGCTGCCAG 419
consensus_6019#2 -AGCGCCTGAAGGCGAAGGCG--GAAGCGAAGGCGGCCGGCAAGGAGGAACCGCCATCGA 343
** * * * * ** * ** *
consensus_6019#0 GCGCACATCAAGCAGTTCCACAACTCGAAGATCCGATTCCCGCTGGTGCAGCGATACCAC 537
consensus_6019#1 GCGCTCTTCCTTCAGTTTGGCCGCCTCGGCGCTC---TCTTCCTCATCCTCCGATCCGAA 476
consensus_6019#2 A-GCGGGCCAACCAGCTGCGCCA---GGGCATCA---ACTCCGTGGTGAAGATGGTCGAG 396
** * *** * * * * * * *
consensus_6019#0 CACAAGCGCTACCGGAAGCTGTTCTCTTACCGCCG-CCCGGAGACCTTCTACCAGTAAGG 596
consensus_6019#1 CAGATCCAC-ATCATCA-TCATCGTCT--CCGCCG-GCCGGTGCGGCGGCGACAGTTGGC 531
consensus_6019#2 CAGAAGAAGGCCCAGCTGGTGATCATTGCGCACGACGTCGATCCGATCGAGCTGGTCGTC 456
** * * * * * ** **
consensus_6019#0 CGGAAGAAGCAGCGGCGCACGGCACTTTTTGAGAAGACTGTCATCA-TACGTATCGCCGC 655
consensus_6019#1 TTGCCG--CCGGCTACCTGTGGCAGGGCCTGACCGCCCCATTCCGAGCGCTCCTTAGCGT 589
consensus_6019#2 TACCTG--CCGGCGCTCTGCCGCAAGA--TGGGCGTGCCGTACTGC---ATCATCAAGGG 509
* * ** *** ** * * * *
consensus_6019#0 C--ACAGCGCCACGGATTCGTCCGCATTCAGCCGCGTTGTGTTCGCGTTTGGAGTGAGTG 713
consensus_6019#1 TGAACGATGCGATGTGGTTGTACCAGCGCAGCGGTGCCACATGGGGTAGCGGCGGGAGCT 649
consensus_6019#2 T--AAGGCGCGCCTCGG-CACGCTGGTGTA-CCGCAAGACGTGCACCTGCGTTGCG--CT 563
* ** * * * * * * * *
consensus_6019#0 CTGCT-GCTGCGT-GTGCACGATCGGTTGTTGTTGTGGTGGTGCGTGTT-TACGGTGCGG 770
consensus_6019#1 TTGCCCAGGGCATCGAACACGGACAGATCAGCCTTCGATGGAGCGTATCCTTCGACATAG 709
consensus_6019#2 GAGCC-AGGTCGA-GAACGCGGACAAGCCCAACC-TGGCCAAGCTGGT------------ 608
** * * * ** * * ** *
consensus_6019#0 -TGTGATGATGATGCTGTGTGT---ATTCCTCTGGTTGAAGTGTTAATTTG-CACCGG-A 824
consensus_6019#1 CTGTTATCAGCCAGGAATTTGTCCAATTCCTTCAGTCCGTTGGCGGTCTTAACATCTCCG 769
consensus_6019#2 ------------------------------------------------------------
consensus_6019#0 AATACAGTTGCGGCCCCCCTTCTCTTTCCATC-CACCCCAGGGGGGGAAGTCTTTGAGCA 883
consensus_6019#1 AATGCCATTTTGAGCAAATTTCCTTAAAAATCTCGGAACAGAGCGATCGGTCACGACGTG 829
consensus_6019#2 ------------------------------------------------------------
consensus_6019#0 AAGTTGAAACAAAAGGAGAGGTGAATAAAAGTTGGTTTTGCCGCTCCA 931
consensus_6019#1 TGCCCGA---TGAAGATTTGACGGAAAAAAGCTAGTTGGCCAACAGT- 873
consensus_6019#2 ------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||