cluster # 6026

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Anopheles gambiae
cluster # 6026 cluster # 6026 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6026#0 length = 751 sequences # 4

consensus_6026#1 length = 299 sequences # 1

consensusID : consensus_6026#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 751
fasta sequence

                              [CCCCGCAGTCGCACTAGACTACTACGCCGGTCCGTTCGTCTGTCTGTTCCGTGCGCATCTCCCTATCCGGACTGGTCGCATCGTTCGTGAACAAACCGCTAGGTGCAGTTTCCGACATCGGCTTTGTCCACAAAAAAGCGCCACAACGAGACAGACATCCCCAAAGTGATGACTTGATGATAGACAAGTATTCTGAATCAGTGTGAGCATAGTTGATCACAAAAGAAACAGTGGATATCATATTCCGACAGTGAATGTGCGTGATCTAGTGTTCCAGTTTTACGTGAGCAGTTCAACGCAAAGGCTTTTCTTAAGCAATCAGTTTCTAAACTACCCCGCAAGAGAATCCTAAACGTTCGAGAGATGGGAACGCAACAAAGATTGCGTACTATCGCGTCCTTCGCAGTGCTGACATTCCTGGGACTTACCTTCGCACAGGATGATTCGTCACAGTCGCGACCGCTCAACGATGGATCGTTCAAGTTTGGCACCAGGACAAGCTTTTCCTGTACTGGCCGGGCGGCCGGCTACTATGCGGACGTTGAAACGGGCTGCCAGATCTACCACATGTGCGACGGACTCGGGCGGCAGTTCAGCTACGCCTGTCCCAATACGACACTGTTCCAGCAGCGTATGCTCATCTGTGACCACTGGTACATGGTCAACTGCTCCAAGGCGGAAAGCAACTATGCGGCAAACCTGTTGATCGGCCAACGGGATAAGCCCTTTGTGCCGGAGGAGGAAAACGAAA]

[+] EMBL BM615781             [  CCGCAGTCGCACTAGACTACTACGCCGGTCCGTTCGTCTGTCTGTTCCGTGCGCATCTCCCTATCCGGACTGGTCGCATCGTTCGTGAACAAACCGCTAGGTGCAGTTTCCGACATCGGCTTTGTCCACAAAAAAGCGCC   ACGAGACAGACATCCCCAAAGTGATGACTTGATGATAGACAAGTATTCTGAATCAGTGTGAGCATAGTTGATCACAAAAGAAACAGTGGATATCATATTCCGACAGTGAATGTGCGTGATCTAGTGTTCCAGTTTTACGTGAGCAGTTCAACGCAAAGGCTTTTCTTAAGCAATCAGTTTCAAAACTACCCCGCAAGAGAATCCTAAACGTTCGAGAGATGGGAACGCAACAAAGATTGCGTACTATCGCGTCCTTCGCAGTGCTGACATTCCTGGGACTTACCTTCGCACAGGATGATTCGTCACAGTCGCGACCGCTCAACGATGGATCGTTCAAGTTTGGCACCAGGACAAGCTTTTCCTGTACTGGCCGGGCGGCCGGCTACTATGCGGACGTTGAAACGGGCTGCCAGATCTACCACATGTGCGACGGACTCGGGCGGCAATTCAGCTACGCCTGTCCCAATACGACACTGTTCCAGCAGCGTATGCTCATCTGTGACCACTGGTACATG                                                                                           ]
[+] EMBL BM580506             [ccgaGCAGTCGCACTAGACTACTCCGCCGGTCCGTTCGTCTGTCTGTTCCGTGCGCATCTCCCTATCCGGACTGGTCGCATCGTTCGTGAACAAACCGCTAGGTGCAGTTTCCGACATCGGCTTTGTCCACAAAAAAGCGCCACAACGAGACAGACATCCCCAAGGTGATGACTTGATGATAGACAAGTATTCTGAATCAGTGTGAACATAGTTGATCACAAAAGATACAGTGGATATCATATTCCGACAGTGAATGTGCGTGATCTAATGTTCTAGTTTTACGTGTGCAGATCAACGCAAAGGCCTTTTTTAAGCAATCAGTTTCTAAACTACCCCGCACGAGAATCGTAAACGTTCGAGAGATGGGAACGCAACAAAGATTGCGTACTATCGCGTCCTTCGCAGTGCTGACATTCCTGGGACTTACCTTCGCACAGGATGATTCGTCACAGTCGCGACCGCTC                                                                                                                                                                                                                                                                                              ]
[+] EMBL BM575778             [                     ccgCGCCGGTCCGTTCGTCTGTCTGTTCCGTGCGCATCTCCCTATCCGGACTGGTCGCATCGTTCGTGAACAAACCGCTAGGTGCAGTTTCCGACATCGGCTTTGTCCACAAAAGAGCGCCACAACGAGACAGACATCCCCAAAGTGATGACTTGATGATAGACAAGTATTCTGAATCATTGTGAGCATAGTTGATCACAAAAGAAACAGTGGATATCATATTCCGACAGTGAATGTGCGTGATCTAGTGTTCCAGTTTTACGTGAGCAGTTCAACGCAAAGGCTTTTCTTAAGCAATCAGTTTCTAAACTACTCCGCAAGAGAATCCTAAACGTTGGAGAGATGGGAACGCAACAAAGATTGCGTACTATCGCGTCCTTCGCAGTGCTGACATTCCTGGGACTTACCTTCGCACAGGATGATTCGTCACAGTCGCGACCGCTCAACGATGGATCGTTCAAGTTTGGCACCAGGACAAGCTTTTCCTGTACTGGCCGGGCGGCCGGCTACTATGCGGACGTTGAAACGGGCTGCCAGATCTACCACATGTGCGACGGACTCGGGCGGCAGTTCAGCTACGCCTGTCCCAATACGACACTGTTCCAGCAGCGTATGCTCATCTGTGACCACTGGTACATGGTCAACTGCTCCAAGGCGGAAAGCAACTATGCGGCAAACCTGTTGATCGGCC                                       ]
[+] EMBL BM613950             [                                                                                        ccgCAAACCGCTAGGTGCAGTTTCCGACATCGGCTTTGTCCACAAAAAAGCGCCACAACGAGACAGACATCCCCAAGGTGATGACTTGATGATAGACAAGTATTCTGAATCAGTGTGAACATAGTTGATCACAAAAGATACAGTGGATATCATATTCCGACAGTGAATGTGCGTGATCTAATGTTCTAGTTTTACGTGTGCAGTTCAACGCAAAGGCCTTTTTTAAGCAATCAGTTTCTAAACTACCCCGCACGAGAATCGTAAACGTTCGAGAGATGGGAACGCAACAAAGATTGCGTACTATCGCGTCCTTCGCAGTGCTGACATTCCTGGGACTTACCTTCGCACAGGATGATTCGTCACAGTCGCGACCGCTCAACGATGGATCGTTCAAGTTTGGCACCAGGACAAGCTTTTCCTGTACTGGCCGGGCGGCCGGCTACTATGCGGACGTTGAAACGGGCTGCCAGATCTACCACATGTGCGACGGACTCGGGCGGCAGTTCAGCTACGCCTGTCCCAATACGACACTGTTCCAGCAGCGTATGCTCATCTGTGACCACTGGTACATGGTCAACTGCTCCAAGGCGGAAAGCAACTATGCGGCAAACCTGTTGATCGGCCAACGGGATAAGCCCTTTGTGCCGGAGGAGGAAAACGAAA]




>consensus_6026#0
CCCCGCAGTCGCACTAGACTACTACGCCGGTCCGTTCGTCTGTCTGTTCCGTGCGCATCT
CCCTATCCGGACTGGTCGCATCGTTCGTGAACAAACCGCTAGGTGCAGTTTCCGACATCG
GCTTTGTCCACAAAAAAGCGCCACAACGAGACAGACATCCCCAAAGTGATGACTTGATGA
TAGACAAGTATTCTGAATCAGTGTGAGCATAGTTGATCACAAAAGAAACAGTGGATATCA
TATTCCGACAGTGAATGTGCGTGATCTAGTGTTCCAGTTTTACGTGAGCAGTTCAACGCA
AAGGCTTTTCTTAAGCAATCAGTTTCTAAACTACCCCGCAAGAGAATCCTAAACGTTCGA
GAGATGGGAACGCAACAAAGATTGCGTACTATCGCGTCCTTCGCAGTGCTGACATTCCTG
GGACTTACCTTCGCACAGGATGATTCGTCACAGTCGCGACCGCTCAACGATGGATCGTTC
AAGTTTGGCACCAGGACAAGCTTTTCCTGTACTGGCCGGGCGGCCGGCTACTATGCGGAC
GTTGAAACGGGCTGCCAGATCTACCACATGTGCGACGGACTCGGGCGGCAGTTCAGCTAC
GCCTGTCCCAATACGACACTGTTCCAGCAGCGTATGCTCATCTGTGACCACTGGTACATG
GTCAACTGCTCCAAGGCGGAAAGCAACTATGCGGCAAACCTGTTGATCGGCCAACGGGAT
AAGCCCTTTGTGCCGGAGGAGGAAAACGAAA

consensusID : consensus_6026#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 299
fasta sequence

                              [GGCAGAATCGGCACGNTGGACCAGTTTTACGTGAGCAGTTCAACGCAAAGGCTTTTCTTAAGCAATCAGTTTCTAAACTACTCCGCAAGAGAATCCTAAACGTTGGAGAGATGGGAACGCAACAAAGATTGCGTACTATCGCGTCCTTCGCAGGTGCTGACATTCCTGGGACTTACCTTCGCACAGGATGATTCGTCACAGTCGCGACCGCTCAACGATGGATCGTTCAAGTTTGGNCACCAGGACAAGCTTTTCCTGTACTGGCCGGGCGGCCGGCTACTATGCGGACGTTGCAAACG]

[+] EMBL BX468927             [GGCAGAATCGGCACGNTGGACCAGTTTTACGTGAGCAGTTCAACGCAAAGGCTTTTCTTAAGCAATCAGTTTCTAAACTACTCCGCAAGAGAATCCTAAACGTTGGAGAGATGGGAACGCAACAAAGATTGCGTACTATCGCGTCCTTCGCAGGTGCTGACATTCCTGGGACTTACCTTCGCACAGGATGATTCGTCACAGTCGCGACCGCTCAACGATGGATCGTTCAAGTTTGGNCACCAGGACAAGCTTTTCCTGTACTGGCCGGGCGGCCGGCTACTATGCGGACGTTGCAAACG]




>consensus_6026#1
GGCAGAATCGGCACGNTGGACCAGTTTTACGTGAGCAGTTCAACGCAAAGGCTTTTCTTA
AGCAATCAGTTTCTAAACTACTCCGCAAGAGAATCCTAAACGTTGGAGAGATGGGAACGC
AACAAAGATTGCGTACTATCGCGTCCTTCGCAGGTGCTGACATTCCTGGGACTTACCTTC
GCACAGGATGATTCGTCACAGTCGCGACCGCTCAACGATGGATCGTTCAAGTTTGGNCAC
CAGGACAAGCTTTTCCTGTACTGGCCGGGCGGCCGGCTACTATGCGGACGTTGCAAACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6026#0      CCCCGCAGTCGCACTAGACTACTACGCCGGTCCGTTCGTCTGTCTGTTCCGTGCGCATCT 60
consensus_6026#1      ------------------------------------------------------------
                                                                                  

consensus_6026#0      CCCTATCCGGACTGGTCGCATCGTTCGTGAACAAACCGCTAGGTGCAGTTTCCGACATCG 120
consensus_6026#1      ------------------------------------------------------------
                                                                                  

consensus_6026#0      GCTTTGTCCACAAAAAAGCGCCACAACGAGACAGACATCCCCAAAGTGATGACTTGATGA 180
consensus_6026#1      ------------------------------------------------------------
                                                                                  

consensus_6026#0      TAGACAAGTATTCTGAATCAGTGTGAGCATAGTTGATCACAAAAGAAACAGTGGATATCA 240
consensus_6026#1      ------------------------------------------------------------
                                                                                  

consensus_6026#0      TATTCCGACAGTGAATGTGCGTGATCTAGTGTTCCAGTTTTACGTGAGCAGTTCAACGCA 300
consensus_6026#1      -------------GGCAGAATCGGCACGNTGGACCAGTTTTACGTGAGCAGTTCAACGCA 47
                                            *      **  ***************************

consensus_6026#0      AAGGCTTTTCTTAAGCAATCAGTTTCTAAACTACCCCGCAAGAGAATCCTAAACGTTCGA 360
consensus_6026#1      AAGGCTTTTCTTAAGCAATCAGTTTCTAAACTACTCCGCAAGAGAATCCTAAACGTTGGA 107
                      ********************************** ********************** **

consensus_6026#0      GAGATGGGAACGCAACAAAGATTGCGTACTATCGCGTCCTTCGCAG-TGCTGACATTCCT 419
consensus_6026#1      GAGATGGGAACGCAACAAAGATTGCGTACTATCGCGTCCTTCGCAGGTGCTGACATTCCT 167
                      ********************************************** *************

consensus_6026#0      GGGACTTACCTTCGCACAGGATGATTCGTCACAGTCGCGACCGCTCAACGATGGATCGTT 479
consensus_6026#1      GGGACTTACCTTCGCACAGGATGATTCGTCACAGTCGCGACCGCTCAACGATGGATCGTT 227
                      ************************************************************

consensus_6026#0      CAAGTTTGGC-ACCAGGACAAGCTTTTCCTGTACTGGCCGGGCGGCCGGCTACTATGCGG 538
consensus_6026#1      CAAGTTTGGNCACCAGGACAAGCTTTTCCTGTACTGGCCGGGCGGCCGGCTACTATGCGG 287
                      *********  *************************************************

consensus_6026#0      ACGTTG-AAACGGGCTGCCAGATCTACCACATGTGCGACGGACTCGGGCGGCAGTTCAGC 597
consensus_6026#1      ACGTTGCAAACG------------------------------------------------ 299
                      ****** *****                                                

consensus_6026#0      TACGCCTGTCCCAATACGACACTGTTCCAGCAGCGTATGCTCATCTGTGACCACTGGTAC 657
consensus_6026#1      ------------------------------------------------------------
                                                                                  

consensus_6026#0      ATGGTCAACTGCTCCAAGGCGGAAAGCAACTATGCGGCAAACCTGTTGATCGGCCAACGG 717
consensus_6026#1      ------------------------------------------------------------
                                                                                  

consensus_6026#0      GATAAGCCCTTTGTGCCGGAGGAGGAAAACGAAA 751
consensus_6026#1      ----------------------------------