cluster # 6027

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Anopheles gambiae
cluster # 6027 cluster # 6027 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6027#0 length = 822 sequences # 3

consensus_6027#1 length = 644 sequences # 1
consensus_6027#2 length = 637 sequences # 1

consensusID : consensus_6027#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 822
fasta sequence

                              [AGAATCGCCNGAGGTNGCACATTTCTTTGGATGAAATTTCGTCCGATTCCGATGTCGACTCGAAGCGCACTGCTAAGCGGAACAAAAAAGCCGACGGTGGCAAGCAAGGAACGGAAGAAAGGAATGGTGAACCAAAGTCGGAAAAGGAGATGACTGTGCTGGAGCTGCTCGAGCTGCAGGCCCGTGCACGTGCGATCCGTTCGCAGCTGGCGCTGGAACCGGTAACGAAGATAGAAATCGACTCCGAGCATGAGGCAGAGGACGGTCGCCATGGTGACGTCGATACGGACGACGAGACGAAGCTGCCCGCAAGAGCTCGCACTGGCTCGAAAGCGTCGGACGGGGCGAAAAATGGCACTCAGTTCAAGAATGAAAACAACGCCCAACAGCTCACGAAACGGGTGCGGCTGAAACGTAACTTCCGCATACGCAAGGTGGGCGACGAGGACGATGATGAGCAGGAGCTGTCCAGCAATCCGCCCGACACTGGGCGGGAAAAATCGACCGAACTGGCGATGGAAGCGATGGTAGAGGAGGAGCAAGAGAAGGCACCGGAAAGTTCCCCGCAGCAGATGGACGAAAAGATGGAAGAGGATGGAGAGGAAAAACGCGCGCCAAGCGTCACACAAGCTGAGGAGGAAAAGCAAACCGAGCCGGACAGTTCAGCGGTAGAAAAGGAAACCGAAACTGACACCGCGGAAGCGAATGCGTGTACGAACGTACCAGTAACAACAACGGAAGCAACGGATGCTACTCAAAAGGATGATGCCGACGCTGAACCACCTCAAACCGTCCGTGCTGGCGAGGAAGGGGACCGGGAAA]

[+] EMBL AL696994             [AGAATCGCCNGAGGTNGCACATTTCTTTGGATGAAATTTCGTCCGATTCCGATGTCGACTCGAAGCGCACTGCTAAGCGGAACAAAAAAGCCGACGGTGGCAAGCAAGGAACGGAAGAAAGGAATGGTGAACCAAAGTCGGAAAAGGAGATGACTGTGCTGGAGCTGCTCGAGCTGCAGGCCCGTGCACGTGCGATCCGTTCGCAGCTGGCGCTGGAACCGGTAACGAAGATAGAAATCGACTCCGAGCATGAGGCAGAGGACGGTCGCCATGGTGACGTCGATACGGACGACGAGACGAAGCTGCCCGTAAGAGCTCGCACTGGCTCGAAAGCGTCGGACGGGGCGAAAAATGGCACTCAGTTCAAGAATGAAAACAACGCCCAACAGCTCACGAAACGGGTGCGGCTGAAACGTAACTTCCGCATACGCAAGGTGGGCGACGAGGACGATGATGAGCAGGAGCTGTCCAGC                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BX607176             [                                                                                                                                                    GATGACTGTGCTGGAGCTGCTCGAGCTGCAGGCCCGTGCACGTGCGATCCGTTCGCAGCTGGCGCTGGAACCGGTAACGAAGATAGAAATCGACTCCGAGCATGAGGCAGAGGACGGTCGCCATGGTGACGTCGATACGGACGACGAGACGAAGCTGCCCGCAAGAGCTCGCACTGGCTCGAAAGCGTCGGACGGGGCGAAAAATGGCACTCAGTTCAAGAATGAAAACAACGCGCAACAGCTCACGAAACGGGTGCGGCTGAAACGTAACTTCCGCATACGCAAGGTGGGCGACGAGGAAGATGATGAGCAGGAGCTGTCCAGCAATCCGCCCGACACTGGGCGGGAAAAATCGACCGAACTGGCGATGGAAGCGATGGTAGAGGAGGAGCAAGAGAAGGCACCGGAAAGTTCCCCGCAGCAGATGGACGAAAAGATGGAAGAGGATGGAGAGGAAAAACGCGCGCCAAGCGTCACACAAGCTGAGGAGGAAAAGCAAACCGAGCCGGACAGTTCAGCGGTAGAAAAGGAAACCGAAACTGACACCGCGGAAGCGAATGCGTGTACGAACGTACCAGTAACAACAACGGAAGCAACGGATGCTACTCAAAAGGATGATGCCGACGCTGAACCACCTCAAACCGTCCGTGCTGGCGAGGAAGGGGACCGGGAAA]
[+] EMBL AL693660             [                                                                                                                                                cgagGATTA TGT CTGGAGCTGCTCGAGCTGCAGGCCCGTGCACGTGCGATCCGTTCGCAGCTGGCGCTGGAACCGGTAACGAAGATAGAAATCGACTCCGAGCATGAGGCAGAGGACGGTCGCCATGGTGACGTCGATACGGACGACGAGACGAAGCTGCCCGCAAGAGCTCGCACTGGCTCGAAAGCGTCGGACGGGGCGAAAAATGGCACTCAGTTCAAGAATGAAAACAACGCCCAACAGCTCACGAAACGGGTGCGGCTGAAACGTAACTTCCGCATACGCAAGGTGGGCGACGAGGACGATGATGAGCAGGAGCTGTCCAGCAATCCG CCGACACTGGGCGGGAAAAATCGA CGAACTGGCGATGGAAGCGATGGTAG                                                                                                                                                                                                                                                                                                   ]




>consensus_6027#0
AGAATCGCCNGAGGTNGCACATTTCTTTGGATGAAATTTCGTCCGATTCCGATGTCGACT
CGAAGCGCACTGCTAAGCGGAACAAAAAAGCCGACGGTGGCAAGCAAGGAACGGAAGAAA
GGAATGGTGAACCAAAGTCGGAAAAGGAGATGACTGTGCTGGAGCTGCTCGAGCTGCAGG
CCCGTGCACGTGCGATCCGTTCGCAGCTGGCGCTGGAACCGGTAACGAAGATAGAAATCG
ACTCCGAGCATGAGGCAGAGGACGGTCGCCATGGTGACGTCGATACGGACGACGAGACGA
AGCTGCCCGCAAGAGCTCGCACTGGCTCGAAAGCGTCGGACGGGGCGAAAAATGGCACTC
AGTTCAAGAATGAAAACAACGCCCAACAGCTCACGAAACGGGTGCGGCTGAAACGTAACT
TCCGCATACGCAAGGTGGGCGACGAGGACGATGATGAGCAGGAGCTGTCCAGCAATCCGC
CCGACACTGGGCGGGAAAAATCGACCGAACTGGCGATGGAAGCGATGGTAGAGGAGGAGC
AAGAGAAGGCACCGGAAAGTTCCCCGCAGCAGATGGACGAAAAGATGGAAGAGGATGGAG
AGGAAAAACGCGCGCCAAGCGTCACACAAGCTGAGGAGGAAAAGCAAACCGAGCCGGACA
GTTCAGCGGTAGAAAAGGAAACCGAAACTGACACCGCGGAAGCGAATGCGTGTACGAACG
TACCAGTAACAACAACGGAAGCAACGGATGCTACTCAAAAGGATGATGCCGACGCTGAAC
CACCTCAAACCGTCCGTGCTGGCGAGGAAGGGGACCGGGAAA

consensusID : consensus_6027#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 644
fasta sequence

                              [CCGAGCTTGGCCAAGAGATTTTCCTCATTTTTCGGTGCAAAAAGTGTACCTTGTAAATTAAACATAAACTGCAAAGGGCTATAGTGTTCACACCAAGCGGTTACACAACTTTTCCATTAGCTTGTACACGCTCACTTGCACTGTAAGCATCGGATTTCTTTCACCACTGTGAACTGCGCTGAACCGCTCCGTGATATTCCATTCGGCAGAACTACTCTCGTAAAACCAGCCTGCAAAATGCCAACACAGAAGAAGAAAGTGAAAAAACCAAAAGAGGACACAGAAAGCAAAGCGCCAGCGGCCAACGTGAAGCAGGAACCGGAAGAGCTGAAACCGCTGAGCGCGTACGTCGACGACCGGCTAGAGCTGATACGGCAGGTGTTTTCCTGCGTCAAGCCGAAGGAAATCAAGTATCTGCTGCCCGACTTCCTGGAGGGAAAATCGAACGACGTGATCAAGGAGCGTTGCCTGGACGAGCTGCTCGGCATCTCCACCAAGCGGCTGCACTCCATCATCCAAAACACGAAATGTCCCACCGACACGGAGTCCTCATCGGAGGGGTCGGACGTGGAGAAAATCGAAGAGCACATTTCTTTGGATGAAATTTCGTCCGATTCCGATGTCGACTCGAAGCGCACCGCTAA]

[+] EMBL BM609198             [CCGAGCTTGGCCAAGAGATTTTCCTCATTTTTCGGTGCAAAAAGTGTACCTTGTAAATTAAACATAAACTGCAAAGGGCTATAGTGTTCACACCAAGCGGTTACACAACTTTTCCATTAGCTTGTACACGCTCACTTGCACTGTAAGCATCGGATTTCTTTCACCACTGTGAACTGCGCTGAACCGCTCCGTGATATTCCATTCGGCAGAACTACTCTCGTAAAACCAGCCTGCAAAATGCCAACACAGAAGAAGAAAGTGAAAAAACCAAAAGAGGACACAGAAAGCAAAGCGCCAGCGGCCAACGTGAAGCAGGAACCGGAAGAGCTGAAACCGCTGAGCGCGTACGTCGACGACCGGCTAGAGCTGATACGGCAGGTGTTTTCCTGCGTCAAGCCGAAGGAAATCAAGTATCTGCTGCCCGACTTCCTGGAGGGAAAATCGAACGACGTGATCAAGGAGCGTTGCCTGGACGAGCTGCTCGGCATCTCCACCAAGCGGCTGCACTCCATCATCCAAAACACGAAATGTCCCACCGACACGGAGTCCTCATCGGAGGGGTCGGACGTGGAGAAAATCGAAGAGCACATTTCTTTGGATGAAATTTCGTCCGATTCCGATGTCGACTCGAAGCGCACCGCTAA]




>consensus_6027#1
CCGAGCTTGGCCAAGAGATTTTCCTCATTTTTCGGTGCAAAAAGTGTACCTTGTAAATTA
AACATAAACTGCAAAGGGCTATAGTGTTCACACCAAGCGGTTACACAACTTTTCCATTAG
CTTGTACACGCTCACTTGCACTGTAAGCATCGGATTTCTTTCACCACTGTGAACTGCGCT
GAACCGCTCCGTGATATTCCATTCGGCAGAACTACTCTCGTAAAACCAGCCTGCAAAATG
CCAACACAGAAGAAGAAAGTGAAAAAACCAAAAGAGGACACAGAAAGCAAAGCGCCAGCG
GCCAACGTGAAGCAGGAACCGGAAGAGCTGAAACCGCTGAGCGCGTACGTCGACGACCGG
CTAGAGCTGATACGGCAGGTGTTTTCCTGCGTCAAGCCGAAGGAAATCAAGTATCTGCTG
CCCGACTTCCTGGAGGGAAAATCGAACGACGTGATCAAGGAGCGTTGCCTGGACGAGCTG
CTCGGCATCTCCACCAAGCGGCTGCACTCCATCATCCAAAACACGAAATGTCCCACCGAC
ACGGAGTCCTCATCGGAGGGGTCGGACGTGGAGAAAATCGAAGAGCACATTTCTTTGGAT
GAAATTTCGTCCGATTCCGATGTCGACTCGAAGCGCACCGCTAA

consensusID : consensus_6027#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 637
fasta sequence

                              [CCGCGGACGCGTGGGTTTCCTCATTTTTCGGTGCAAAAAGTGTACCTTGTAAATTAAACATAAACTGCAAAGGGCTATAGTGTTCACACCAAGCGGTTACACAACTTTTCCATTAGCTTGTACACGCTCACTTGCACTGTAAGCATCGGATTTCTTTCACCACTGTGAACTGCGCTGAACCGCTCCGTGATATTCCATTCGGCAGAACTACTCTCGTAAAACCAGCCTGCAAAATGCCAACACAGAAGAAGAAAGTGAAAAAACCAAAAGAGGACACAGAAAGCAAAGCGCCAGCGGCCAACGTGAAGCAGGAACCGGAAGAGCTGAAACCGCTGAGCGCGTACGTCGACGACCGGCTAGAGCTGATACGGCAGGTGTTTTCCTGCGTCAAGCCGAAGGAAATCAAGTATCTGCTGCCCGACTTCCTGGAGGGAAAATCGAACGACGTGATCAAGGAGCGTTGCCTGGACGAGCTGCTCGGCATCTCCACCAAGCGGCTGCACTCCATCATCCAAAACACGAAATGTCCCACCGACACGGAGTCCTCATCGGAGGGGTCGGACGTGGAGAAAATCGAAGAGCACATTTCTTTGGATGAAATTTCGTCCGAATCCGATGTCGACTCGAAGCGCACCGC]

[+] EMBL BM584626             [CCGCGGACGCGTGGGTTTCCTCATTTTTCGGTGCAAAAAGTGTACCTTGTAAATTAAACATAAACTGCAAAGGGCTATAGTGTTCACACCAAGCGGTTACACAACTTTTCCATTAGCTTGTACACGCTCACTTGCACTGTAAGCATCGGATTTCTTTCACCACTGTGAACTGCGCTGAACCGCTCCGTGATATTCCATTCGGCAGAACTACTCTCGTAAAACCAGCCTGCAAAATGCCAACACAGAAGAAGAAAGTGAAAAAACCAAAAGAGGACACAGAAAGCAAAGCGCCAGCGGCCAACGTGAAGCAGGAACCGGAAGAGCTGAAACCGCTGAGCGCGTACGTCGACGACCGGCTAGAGCTGATACGGCAGGTGTTTTCCTGCGTCAAGCCGAAGGAAATCAAGTATCTGCTGCCCGACTTCCTGGAGGGAAAATCGAACGACGTGATCAAGGAGCGTTGCCTGGACGAGCTGCTCGGCATCTCCACCAAGCGGCTGCACTCCATCATCCAAAACACGAAATGTCCCACCGACACGGAGTCCTCATCGGAGGGGTCGGACGTGGAGAAAATCGAAGAGCACATTTCTTTGGATGAAATTTCGTCCGAATCCGATGTCGACTCGAAGCGCACCGC]




>consensus_6027#2
CCGCGGACGCGTGGGTTTCCTCATTTTTCGGTGCAAAAAGTGTACCTTGTAAATTAAACA
TAAACTGCAAAGGGCTATAGTGTTCACACCAAGCGGTTACACAACTTTTCCATTAGCTTG
TACACGCTCACTTGCACTGTAAGCATCGGATTTCTTTCACCACTGTGAACTGCGCTGAAC
CGCTCCGTGATATTCCATTCGGCAGAACTACTCTCGTAAAACCAGCCTGCAAAATGCCAA
CACAGAAGAAGAAAGTGAAAAAACCAAAAGAGGACACAGAAAGCAAAGCGCCAGCGGCCA
ACGTGAAGCAGGAACCGGAAGAGCTGAAACCGCTGAGCGCGTACGTCGACGACCGGCTAG
AGCTGATACGGCAGGTGTTTTCCTGCGTCAAGCCGAAGGAAATCAAGTATCTGCTGCCCG
ACTTCCTGGAGGGAAAATCGAACGACGTGATCAAGGAGCGTTGCCTGGACGAGCTGCTCG
GCATCTCCACCAAGCGGCTGCACTCCATCATCCAAAACACGAAATGTCCCACCGACACGG
AGTCCTCATCGGAGGGGTCGGACGTGGAGAAAATCGAAGAGCACATTTCTTTGGATGAAA
TTTCGTCCGAATCCGATGTCGACTCGAAGCGCACCGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6027#1      ------------------------------------------------------------
consensus_6027#2      ------------------------------------------------------------
consensus_6027#0      AGAATCGCCNGAGGTNGCACATTTCTTTGGATGAAATTTCGTCCGATTCCGATGTCGACT 60
                                                                                  

consensus_6027#1      --CCGAGCTTGGCCAAGAGATTTTCCTCATTTTTCGGTG-----CAAAAAGTGTACCTTG 53
consensus_6027#2      ------CCGCGGACGCGTGGGTTTCCTCATTTTTCGGTG-----CAAAAAGTGTACCTTG 49
consensus_6027#0      CGAAGCGCACTGCTAAGCGGAACAAAAAAGCCGACGGTGGCAAGCAAGGAACGGAAGAAA 120
                             *   *    * *         *     *****     ***  *  * *     

consensus_6027#1      TAAAT--TAAACATAAACTGCAAAGGGCTATAGTGTTCACACCAAGCGGTTACACAACTT 111
consensus_6027#2      TAAAT--TAAACATAAACTGCAAAGGGCTATAGTGTTCACACCAAGCGGTTACACAACTT 107
consensus_6027#0      GGAATGGTGAACCAAAGTCGGAAAAGGAGATGAC-TGTGCTGGAGCTGCTCGAGCTGCAG 179
                        ***  * ***  **   * *** **  **    *   *   *   * *    *  *  

consensus_6027#1      TTCCATTAGCTTGT-ACACGCTCAC---TTGCACTGTAA---GCATCG--GATTTCTTTC 162
consensus_6027#2      TTCCATTAGCTTGT-ACACGCTCAC---TTGCACTGTAA---GCATCG--GATTTCTTTC 158
consensus_6027#0      GCCCGTGCACGTGCGATCCGTTCGCAGCTGGCGCTGGAACCGGTAACGAAGATAGAAATC 239
                        ** *   * **  *  ** ** *   * ** *** **   * * **  ***     **

consensus_6027#1      ACCACTGTGAACTGCGCTGAACCGCTCCGTGATATTCCATTCGGCAGAACTACTCTCGTA 222
consensus_6027#2      ACCACTGTGAACTGCGCTGAACCGCTCCGTGATATTCCATTCGGCAGAACTACTCTCGTA 218
consensus_6027#0      GACTCCGAGCATGAGGCAGAGGACGGTCGCCATGGTGACGTCGATACGGACGACGAGACG 299
                        * * * * *    ** **       **  **  *    ***  *              

consensus_6027#1      AAACCAGCCTGCAAAATGCCAACACAGAA--GAAGAAAGTGAAAAAACCAAAAGAGGACA 280
consensus_6027#2      AAACCAGCCTGCAAAATGCCAACACAGAA--GAAGAAAGTGAAAAAACCAAAAGAGGACA 276
consensus_6027#0      AAGCT-GCCCGCAAGA-GCTCGCACTGGCTCGAAAGCGTCGGACGGGGCGAAAAATGGCA 357
                      ** *  *** **** * **   *** *    ***      * *     * *** * * **

consensus_6027#1      CAGA----AAGCAAAGCGCCAGCGGCCAACGTGAAGCAGGAACCGGAAGAGCTGAAAC-C 335
consensus_6027#2      CAGA----AAGCAAAGCGCCAGCGGCCAACGTGAAGCAGGAACCGGAAGAGCTGAAAC-C 331
consensus_6027#0      CTCAGTTCAAGAATGAAAACAACGCCCAACAGCTCAC-GAAACGGGTGCGGCTGAAACGT 416
                      *  *    *** *      ** ** *****      * * *** **    ********  

consensus_6027#1      GCTGAGCGCGTACGTC-GACGACCGGCTAGAGCTGATACG-GCAGGTGTTTTCCTGCG-T 392
consensus_6027#2      GCTGAGCGCGTACGTC-GACGACCGGCTAGAGCTGATACG-GCAGGTGTTTTCCTGCG-T 388
consensus_6027#0      AACTTCCGCATACGCAAGGTGGGCGACGAGGACGATGATGAGCAGGAGCTGTCCAGCAAT 476
                            *** ****   *  *  ** * **  *    * * ***** * * *** **  *

consensus_6027#1      CAAGCCGAAGGAAATCAAGTATCTGCTGCCCGACTTCCTGGAGGGAAAATCGAACGACGT 452
consensus_6027#2      CAAGCCGAAGGAAATCAAGTATCTGCTGCCCGACTTCCTGGAGGGAAAATCGAACGACGT 448
consensus_6027#0      CCGCCCGACACTGGGCGGGAAAAATCGACCGAACTGGCGATGGAAGCGATGGTAGAGGAG 536
                      *   ****       *  * *    *  **  ***  *    *     ** * *      

consensus_6027#1      GATCAAGGAGCGTTGCCTGGACGAGCTGCTCGGCATCTCCACCAAGCGGCTGCACTCCAT 512
consensus_6027#2      GATCAAGGAGCGTTGCCTGGACGAGCTGCTCGGCATCTCCACCAAGCGGCTGCACTCCAT 508
consensus_6027#0      GAGCAAGAGAAGGCACCGGAAAGTTCCCCGCAGCAGATGGACGAAAAGATGGAAGAGGAT 596
                      ** ****    *   ** * * *  *  * * ***  *  ** **  *   * *    **

consensus_6027#1      C---ATCCAAAACACG----AAATGTCCCACCGAC----------ACGGAGTCCTCATCG 555
consensus_6027#2      C---ATCCAAAACACG----AAATGTCCCACCGAC----------ACGGAGTCCTCATCG 551
consensus_6027#0      GGAGAGGAAAAACGCGCGCCAAGCGTCACACAAGCTGAGGAGGAAAAGCAAACCGAGCCG 656
                          *   ***** **    **  *** ***   *          * * *  **    **

consensus_6027#1      GAGGGGTCGGACGTGGAGAA---AATCGAAGAGCACATTTCTTTGGATGAAATTTCGTCC 612
consensus_6027#2      GAGGGGTCGGACGTGGAGAA---AATCGAAGAGCACATTTCTTTGGATGAAATTTCGTCC 608
consensus_6027#0      GACAGTTCAGCGGTAGAAAAGGAAACCGAAACTGACACCGCGGAAG-CGAATGCGTGTAC 715
                      **  * ** *  ** ** **   ** ****    ***   *    *  ***     ** *

consensus_6027#1      GATT---CCGATGTCGACTCGAAGCGCACCGCTAA------------------------- 644
consensus_6027#2      GAAT---CCGATGTCGACTCGAAGCGCACCGC---------------------------- 637
consensus_6027#0      GAACGTACCAGTAACAACAACGGAAGCAACGGATGCTACTCAAAAGGATGATGCCGACGC 775
                      **     **  *  * **       *** **                             

consensus_6027#1      -----------------------------------------------
consensus_6027#2      -----------------------------------------------
consensus_6027#0      TGAACCACCTCAAACCGTCCGTGCTGGCGAGGAAGGGGACCGGGAAA 822