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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6029#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 812 fasta sequence
[ACCCACGCGTCCGGACCAGACGACGGCGAGCGACGGTAGACAGGCCGGGGGGTCTAGCAGCGCCCTCACGGACGTTCGGACCCACTTCATCCAGGACAATCAGGCGGTGGAGGCGAGCCGGATACAGCAGCGATCCTCGAACCGGACGTTCGTCACCGTGCTCAAGACGACGCTGCGCACTCGCGGCCTCTCCCTGCAGGACGTACCGCCCCTGGCGACGGAAGCGCTGACCGAGGCGGACGAAACGCTGCAGATCATCCTGATTGTGGTATCGGCGGCCCTAGCCGTCCTGTGCGTGATACTGTTCGTGGCGTTCTTCATCAAGATCCGCAGCCTAAATCGCCAGCTGAAGGCCCTGTCCGCGACCGACTTTGGGTCGATTTCGTCCGAGCTGAATGGGAAGCCGACGCGCAACGTGCCCACAACGAACATCTTCTCGATCGAGGGCTCCAATCCGGTGCTTAACGATAACGAGTTCCGCGACCGGATGGGTGGTAGTGGTGGCGGTGTTTATGACGATCTCAGTCTACAATCGGAAGAATCCGACTTCAACGACGTGGACA-GGGACATTTTCGCACCGAAGCG-AAAGGAGAGTCTTAATCCCGCGCTCCTGGAGCACATACGCCAGCGTTCGCTAAACCCAATGGCGAACGGAACTGACAAGAGCAACGACGGCGCGCCAACCTCCAACCATAAAAAGCTCGACGAAACTGACGACGAGCTGTCCCACCGGNTCTAGCGCGTGTGTAGTGGNTTCGATGTCGATGGTTTTATGTGCTGGTTTGGTGTTAATTTTAGCTGTAAATACATTT]
[+] EMBL BM582353 [ACCCACGCGTCCGGACCAGACGACGGCGAGCGACGGTAGACAGGCCGGGGGGTCTAGCAGCGCCCTCACGGACGTTCGGACCCACTTCATCCAGGACAATCAGGCGGTGGAGGCGAGCCGGATACAGCAGCGATCCTCGAACCGGACGTTCGTCACCGTGCTCAAGACGACGCTGCGCACTCGCGGCCTCTCCCTGCAGGACGTACCGCCCCTGGCGACGGAAGCGCTGACCGAGGCGGACGAAACGCTGCAGATCATCCTGATTGTGGTATCGGCGGCCCTAGCCGTCCTGTGCGTGATACTGTTCGTGGCGTTCTTCATCAAGATCCGCAGCCTAAATCGCCAGCTGAAGGCCCTGTCCGCGACCGACTTTGGGTCGATTTCGTCCGAGCTGAATGGGAAGCCGACGCGCAACGTGCCCACAACGAACATCTTCTCGATCGAGGGCTCCAATCCGGTGCTTAACGATAACGAGTTCCGCGACCGGATGGGTGGTAGTGGTGGCGGTGTTTATGACGATCTCAGTCTACAATCGGAAGAATCCGACTTCAACGACGTGGACAGGGGACATTTTCGCACCGAAGCGAAAAGGAGAGTCTTAATCCCGCGCTCCTGGAGCACATACGCC ]
[+] EMBL BX621661 [ ACGGCGAGCGACGGTAGACAGGCCGGGGGGTCTAGCAGCGCCCTCACGGACGTTCGGACCCACTTCATCCAGGACAATCAGGCGGTGGAGGCGAGCCGGATACAGCAGCGATCCTCGAACCGGACGTTCGTCACCGTGCTCAAGACGACGCTGCGCACTCGCGGCCTCTCCCTGCAGGACGTACCGCCCCTGGCGACGGAAGCGCTGACCGAGGCGGACGAAACGCTGCAGATCATCCTGATTGTGGTATCGGCGGCCCTAGCCGTCCTGTGCGTGATACTGTTCGTGGCGTTCTTCATCAAGATCCGCAGCCTAAATCGCCAGCTGAAGGCCCTGTCCGCGACCGACTTTGGGTCGATTTCGTCCGAGCTGAATGGGAAGCCGACGCGCAACGTGCCCACAACGAACATCTTCTCGATCGAGGGCTCCAATCCGGTGCTTAACGATAACGAGTTCCGCGACCGGATGGGTGGTAGTGGTGGCGGTGTTTATGACGATCTCAGTCTACAATCGGAAGAATCCGACTTCAACGACGTGGACA GGGACATTTTCGCACCGAAGCG AAAGGAGAGTCTTAATCCCGCGCTCCTGGAGCACATACGCCAGCGTTCGCTAAACCCAATGGCGAACGGAACTGACAAGAGCAACGACGGCGCGCCAACCTCCAACCATAAAAAGCTCGACGAAACTGACGACGAGCTGTCCCACCGGNTCTAGCGCGTGTGTAGTGGNTTCGATGTCGA ]
[-] EMBL BX628966 [ AGCAGCGATCCTCGAACCGGACGTTCGTCACCGTGCTCAAGACGACGCTGCGCACTCGCGGCCTCTCCCTGCAGGACGTACCGCCCCTGGCGACGGAAGCGCTGACCGAGGCGGACGAAACGCTGCAGATCATCCTGATTGTGGTATCGGCGGCCCTAGCCGTCCTGTGCGTGATACTGTTCGTGGCGTTNTTCATCAAGATCCGCAGCCTAAATCGCCAGCTGAAGGCCCTGTCCGCGACCGACTTTGGGTCGATTTCGTCCGAGCTGAATGGGAAGCCGACGCGCAACGTGCCCACAACGAACATCTTNTCGATCGAGGGCTCCAATCCGGTGCTTAACGATAACGAGTTCCGCGACCGGATGGGTGGTAGTGGTGGCGGTGTTTATGACGATCTCAGTCTACAATCGGAAGAATCCGACTTCAACGACGTGGACA GGGACATTTTCGCACCGAAGCG AAAGGAGAGTNTTAATCCCGCGCTCCTGGAGCACATACGCCAGCGTTCGCTAAACCCAATGGCGAACGGAACTGACAAGAGCAACGACGGCGCGCCAACCTCCAACCATAAAAAGCTCGACGAAACTGACGACGAGCTGTCCCACCGGTTCTAGCGCGTGTGTAGTGGTTTCGATGTCGATGGTTTTATGTGCTGGTTTGGTGTTAATTTTAGCTGTAAATACATTT]
consensusID : consensus_6029#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 763 fasta sequence
[GCAGATCGGCCCGAGGCGTTAAGTTTTTGCCCAAGAGCTGACCCGGTGCGTACGAAATGGAATGCAACATCGACGACATCGACCAGACGACGGCGAGCGACGGTAGACAGGCCGGGGGGTCTAGCAGCGCCCTCACTGACGTTCGGACCCACTTCATCCAGGACAATCAGGCGGTGGAGGCGAGCCGGATACAGCAGCGATCCTCGAACCGGGACGTTCGTCACCGTGGCTCAAAGAACGACGCTGCGGCACTCGCGGGCTCTCCNCTGCAGGGACGTACCGGCCCTTGGCGACGGAAAGCGCTGACCGAGGCGGACGATACGCTTGCGAGATCATCCGTGATTTGTGGTATCGGGCGTGCGCTAGCCGTACTGTGCGTGATACTGTTCGTNGGCGGTTCGTTCAGTCGAAGAATTCGGCAGCGCGTAAATCGGCACAGGCTGAAAGGCCCCTTGTTCCGGGACGCGGACTTTTGGGTCGATTTCGTCCGAGCTGAATGGGAAGCCGACGGCGGCAACTGTGGCCAACGAACGAANCATCTTTCTCGGATCGAGGGCTCCAATCTTGGGTGGCGTTTNACAACCGGAGTTAAGCCGGAAGGGGTATCCCGGGCGGGAAGCCCCGGGGACTTAGCAGGCAGGTTAGAGATTGAGACTAGGCCGAGAGAGGGTTTTAAGCATTGAAGCAGGAATTCNTTCCGAGAGGTACCTTANCAGCAAAGTTCCGGGGGCAAGAGGGGAACAGTTCCCCGGACGCGTTNTCC]
[+] EMBL BX467995 [GCAGATCGGCCCGAGGCGTTAAGTTTTTGCCCAAGAGCTGACCCGGTGCGTACGAAATGGAATGCAACATCGACGACATCGACCAGACGACGGCGAGCGACGGTAGACAGGCCGGGGGGTCTAGCAGCGCCCTCACTGACGTTCGGACCCACTTCATCCAGGACAATCAGGCGGTGGAGGCGAGCCGGATACAGCAGCGATCCTCGAACCGGGACGTTCGTCACCGTGGCTCAAAGAACGACGCTGCGGCACTCGCGGGCTCTCCNCTGCAGGGACGTACCGGCCCTTGGCGACGGAAAGCGCTGACCGAGGCGGACGATACGCTTGCGAGATCATCCGTGATTTGTGGTATCGGGCGTGCGCTAGCCGTACTGTGCGTGATACTGTTCGTNGGCGGTTCGTTCAGTCGAAGAATTCGGCAGCGCGTAAATCGGCACAGGCTGAAAGGCCCCTTGTTCCGGGACGCGGACTTTTGGGTCGATTTCGTCCGAGCTGAATGGGAAGCCGACGGCGGCAACTGTGGCCAACGAACGAANCATCTTTCTCGGATCGAGGGCTCCAATCTTGGGTGGCGTTTNACAACCGGAGTTAAGCCGGAAGGGGTATCCCGGGCGGGAAGCCCCGGGGACTTAGCAGGCAGGTTAGAGATTGAGACTAGGCCGAGAGAGGGTTTTAAGCATTGAAGCAGGAATTCNTTCCGAGAGGTACCTTANCAGCAAAGTTCCGGGGGCAAGAGGGGAACAGTTCCCCGGACGCGTTNTCC]
consensusID : consensus_6029#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 653 fasta sequence
[GCAGAATCGCCACGAGGTTGACAGACGACGGCGAGCGACGCGTAGACAGGCCGGGGGGTCTAGCAGCGCCCTCACGGACGTTCGGACCCACTTCATCCAGGACAATCAGGCGGTGGAGGCGAGCCGGATACAGCAGCGATCCTCGAACCGGACGTTCGTCACCGTGCTCAAGACGACGCTGCGCACTCGCGGCCTCTCCCTGCAGGACGTACCGCCCTGGCGACGGAAGCGCTGACCGAGGCGGACGAAACGCTGCAGATCATCCTGATTGTGGTATCGGCGGCCCTAGCCGTCCTGTGCGTGATACTGTTCGTGGCGTTCTTCATCAAGATCCGCAGCCTAAATCGCCAGCTGAAGGCCCTGTCCGCGACCGACTTTGGGTCGATTTCGTCCGAGCTGAATGGGAAGCCGACGCGCAACGTGCCCACAACGAACATCTTCTCGATCGAGGGCTCCAATCCGGTGCTTAACGATAACGAGTTCCGCGACCGGATGGGTGGTAGTGGTGGCGGTGTTTATGACGATCTCAGTCTACAATCGGAAGAATCCGACTTCAACGACGTGGACAGGGGACATTATCGCACCGAAGGCGAAAGGAGAGTCTNGAANTCCCGNGGACNCCTGGAGCACATACGCCAGGCGTACGCTAAACC]
[+] EMBL BX467276 [GCAGAATCGCCACGAGGTTGACAGACGACGGCGAGCGACGCGTAGACAGGCCGGGGGGTCTAGCAGCGCCCTCACGGACGTTCGGACCCACTTCATCCAGGACAATCAGGCGGTGGAGGCGAGCCGGATACAGCAGCGATCCTCGAACCGGACGTTCGTCACCGTGCTCAAGACGACGCTGCGCACTCGCGGCCTCTCCCTGCAGGACGTACCGCCCTGGCGACGGAAGCGCTGACCGAGGCGGACGAAACGCTGCAGATCATCCTGATTGTGGTATCGGCGGCCCTAGCCGTCCTGTGCGTGATACTGTTCGTGGCGTTCTTCATCAAGATCCGCAGCCTAAATCGCCAGCTGAAGGCCCTGTCCGCGACCGACTTTGGGTCGATTTCGTCCGAGCTGAATGGGAAGCCGACGCGCAACGTGCCCACAACGAACATCTTCTCGATCGAGGGCTCCAATCCGGTGCTTAACGATAACGAGTTCCGCGACCGGATGGGTGGTAGTGGTGGCGGTGTTTATGACGATCTCAGTCTACAATCGGAAGAATCCGACTTCAACGACGTGGACAGGGGACATTATCGCACCGAAGGCGAAAGGAGAGTCTNGAANTCCCGNGGACNCCTGGAGCACATACGCCAGGCGTACGCTAAACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6029#0 ------------------------------------------------------------
consensus_6029#2 ------------------------------------------------------------
consensus_6029#1 GCAGATCGGCCCGAGGCGTTAAGTTTTTGCCCAAGAGCTGACCCGGTGCGTACGAAATGG 60
consensus_6029#0 --------ACCCACGCGTCCGGACCAGACGACGGCGAGCGACG-GTAGACAGGCCGGGGG 51
consensus_6029#2 ---GCAGAATCGCCACGAGGTTGACAGACGACGGCGAGCGACGCGTAGACAGGCCGGGGG 57
consensus_6029#1 AATGCAACATCGACG-ACATCGACCAGACGACGGCGAGCGACG-GTAGACAGGCCGGGGG 118
* * * ******************* ****************
consensus_6029#0 GTCTAGCAGCGCCCTCACGGACGTTCGGACCCACTTCATCCAGGACAATCAGGCGGTGGA 111
consensus_6029#2 GTCTAGCAGCGCCCTCACGGACGTTCGGACCCACTTCATCCAGGACAATCAGGCGGTGGA 117
consensus_6029#1 GTCTAGCAGCGCCCTCACTGACGTTCGGACCCACTTCATCCAGGACAATCAGGCGGTGGA 178
****************** *****************************************
consensus_6029#0 GGCGAGCCGGATACAGCAGCGATCCTCGAACCGG-ACGTTCGTCACCGTG-CTCAAG--A 167
consensus_6029#2 GGCGAGCCGGATACAGCAGCGATCCTCGAACCGG-ACGTTCGTCACCGTG-CTCAAG--A 173
consensus_6029#1 GGCGAGCCGGATACAGCAGCGATCCTCGAACCGGGACGTTCGTCACCGTGGCTCAAAGAA 238
********************************** *************** ***** *
consensus_6029#0 CGACGCTGCG-CACTCGCGGCCTCTCCC-TGCAGG-ACGTACCG-CCCCTGGCGACGGAA 223
consensus_6029#2 CGACGCTGCG-CACTCGCGGCCTCTCCC-TGCAGG-ACGTACCG-CCC-TGGCGACGGAA 228
consensus_6029#1 CGACGCTGCGGCACTCGCGGGCTCTCCNCTGCAGGGACGTACCGGCCCTTGGCGACGGAA 298
********** ********* ****** ****** ******** *** ***********
consensus_6029#0 -GCGCTGACCGAGGCGGACGAAACGCT-GC-AGATCATCC-TGATT-GTGGTATCGG-CG 277
consensus_6029#2 -GCGCTGACCGAGGCGGACGAAACGCT-GC-AGATCATCC-TGATT-GTGGTATCGG-CG 282
consensus_6029#1 AGCGCTGACCGAGGCGGACGATACGCTTGCGAGATCATCCGTGATTTGTGGTATCGGGCG 358
******************** ***** ** ********* ***** ********** **
consensus_6029#0 -GCCCTAGCCGTCCTGTGCGTGATACTGTTCGTGG------CGTTCT-TCATCAAGATCC 329
consensus_6029#2 -GCCCTAGCCGTCCTGTGCGTGATACTGTTCGTGG------CGTTCT-TCATCAAGATCC 334
consensus_6029#1 TGCGCTAGCCGTACTGTGCGTGATACTGTTCGTNGGCGGTTCGTTCAGTCGAAGAATTCG 418
** ******** ******************** * ***** ** * **
consensus_6029#0 GCAGCC--TAAATCGCCA---GCTGAAGG---CCCTGT-CCGCGACC--GACTTT-GGGT 377
consensus_6029#2 GCAGCC--TAAATCGCCA---GCTGAAGG---CCCTGT-CCGCGACC--GACTTT-GGGT 382
consensus_6029#1 GCAGCGCGTAAATCGGCACAGGCTGAAAGGCCCCTTGTTCCGGGACGCGGACTTTTGGGT 478
***** ******* ** ****** * ** *** *** *** ****** ****
consensus_6029#0 CGATTTCGTCCGAGCTGAATGGGAAGCCGACGC--GCAAC-GTGCCCAC--AACGAAC-A 431
consensus_6029#2 CGATTTCGTCCGAGCTGAATGGGAAGCCGACGC--GCAAC-GTGCCCAC--AACGAAC-A 436
consensus_6029#1 CGATTTCGTCCGAGCTGAATGGGAAGCCGACGGCGGCAACTGTGGCCAACGAACGAANCA 538
******************************** ***** *** *** ****** *
consensus_6029#0 TCTTCTC--GATCGAGGGCTCCAATCC--GGTGCTTAACGATAACGAGTTCCGCGACCGG 487
consensus_6029#2 TCTTCTC--GATCGAGGGCTCCAATCC--GGTGCTTAACGATAACGAGTTCCGCGACCGG 492
consensus_6029#1 TCTTTCTCGGATCGAGGGCTCCAATCTTGGGTGGCGTTTNACAACCGGAGTTA-AGCCGG 597
**** ***************** **** * *** * ****
consensus_6029#0 ATGGGTGGTAGTGGTGGCGGTGTTTATGACGATCTCAGTCTACAATCGGAAGAATCCGAC 547
consensus_6029#2 ATGGGTGGTAGTGGTGGCGGTGTTTATGACGATCTCAGTCTACAATCGGAAGAATCCGAC 552
consensus_6029#1 AAGGG--GTATCCCGGGCGGGAAGCCCCGGGGACTTAGCAGGCAGGTTAGAGATTGAGAC 655
* *** *** ***** * ** ** ** *** * ***
consensus_6029#0 TTCAACGAC-GTGGACAGGG-ACATTTTCGCACCGAAG-CGAAAGGAGAGTCTT--AATC 602
consensus_6029#2 TTCAACGAC-GTGGACAGGGGACATTATCGCACCGAAGGCGAAAGGAGAGTCTNGAANTC 611
consensus_6029#1 TAGGCCGAGAGAGGGTTTTAAGCATTGAAGCAG-GAATTCNTTCCGAGAGGTACCTTANC 714
* *** * ** **** *** *** * ***** *
consensus_6029#0 CCGCG--CTCCTGGAGCACATACGCCAG-CGTTCGCTAAACCCAATGGCGAACGGAACTG 659
consensus_6029#2 CCGNGGACNCCTGGAGCACATACGCCAGGCGTACGCTAAACC------------------ 653
consensus_6029#1 AGCAAAGTTCCGGGGGCA-AGAGGGGAACAGTTCCCCGGACGCGTTNTCC---------- 763
** ** *** * * * * ** * * **
consensus_6029#0 ACAAGAGCAACGACGGCGCGCCAACCTCCAACCATAAAAAGCTCGACGAAACTGACGACG 719
consensus_6029#2 ------------------------------------------------------------
consensus_6029#1 ------------------------------------------------------------
consensus_6029#0 AGCTGTCCCACCGGNTCTAGCGCGTGTGTAGTGGNTTCGATGTCGATGGTTTTATGTGCT 779
consensus_6029#2 ------------------------------------------------------------
consensus_6029#1 ------------------------------------------------------------
consensus_6029#0 GGTTTGGTGTTAATTTTAGCTGTAAATACATTT 812
consensus_6029#2 ---------------------------------
consensus_6029#1 ---------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||