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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6030#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1016 fasta sequence
[CCGGTACGCTTAGCGCGCTAGCTAGCGAGAACAAAACGCGTGTGCCGGGTAGCTCGTTGTAATACGCGAGCATCGTGAACCACTTCTACCACAACCACCACCACCACCACCACCGCGGGGAAGGTCGCTCGCGTTTTTTTTGCTTATCGCTTTCGGTGCTCAAGATGGCGTCCGGGAGAAGTACATTGGCGGAAAGCCTCCGAGAGCTGTACCAGTTCAGTGTGGTCGACTACTGCATGTTTGGTGCGATGCTGATCCTTTCCGCTGCCTGCGGGATCTACTTTGGGTTCTTCAAGCGGAACAAGGGCGGTGATTCGGAGACGCCGGAAAGTAGCAGCAGTGACGATGAGAGTGCCCACCGTACGGTGACGGTGGCGAGCGGGAGCAAGCGCACCAAAACCACGTTCGGTTCCTCAACGATGGATGAGTACTTGCTCGGATCACGCAAGTTAAAAGCATTCCCAGTGGCGATGAGTCTTGTGGCGGGATACATATCAGGGGTAACGATACTGGGAACTCCGGCGGAGATTTACAACTTCGGCACGCAGTACTGGTTGATCGTGATTCCCATTCTGCTGAT-GGGTGTTGCGGTTTGTACCGTGTATCTGCCGGTGTTTTGCTCGCTGAAGCTGAACTCTTCGTACGAATATCTGGAG-CTGCGGTTCAGTTCGTCCGTTCGTTCGATAGCGTCAGTGATGTTTGTCATAGACGAGCTGCTTTTCCTACCGATGATCATCTATGTGCCAGCGTTAGCTTTCAATCAAGTAACCGGCTTCAATCTGTACGTGATCGGTGCGATCGTGTGCGTAGTTTGTATATTTTACACATTACTGGGAGGCATCAAAGCGGTGGTATTTACCGATGCGTGGCAAGTGGTCGTAATGTTCATCTCGGTGGTAGTTGTCGTAATTATCGGAACGATCGCAATCGGCGGCCCTGATGTCATCTGGGACCGGTCGGTAGAAGGTGGCCGGATAGACTTCTTCAACTTTAATCCCTCGATGTACGAGCGACAA]
[+] EMBL BM652699 [CCGGTACGCTTAGCGCGCTAGCTAGCGAGAACAAAACGCGTGTGCCGGGTAGCTCGTTGTAATACGCGAGCATCGTGAACCACTTCTACCACAACCACCACCACCACCACCACCGCGGGGAAGGTCGCTCGCGTTTTTTTTGCTTATCGCTTTCGGTGCTCAAGATGGCGTCCGGGAGAAGTACATTGGCGGAAAGCCTCCGAGAGCTGTACCAGTTCAGTGTGGTCGACTACTGCATGTTTGGTGCGATGCTGATCCTTTCCGCTGCCTGCGGGATCTACTTTGGGTTCTTCAAGCGGAACAAGGGCGGTGATTCGGAGACGCCGGAAAGCAGCAGCAGTGACGATGAGAGTGCCCACCGTACGGTGACGGTGGCGAGCGGGAGCAAGCGCACCAAAACCACGTTCGGTTCCTCAACGATGGATGAGTACTTGCTGGGATCGAGGAAGTTGAAGGCGTTCCCGGTAGCGATGAGTCTTGTGGCGGGATACATATCAGGGGTAACGATACTGGGAACTCCGGCGGAGATTTACAACTTCGGCACGCAGTACTGGTTGATCGTGATTCCCATTCTGCTGATGGGGTGTTGCGGTTTGTACCGTGTATTTGCCGGTGTTTTGCTCGCTGAAGCTGAACTCTTCGTACGAATATCTGGAGCCTGCGGTT ]
[+] EMBL BM633420 [ ccGCTGATCCTTTCCGCTGCCTGCGGGATCTACTTTGGGTTCTTCAAGCGGAACAAGGGCGGTGATTCGGAGACGCCGGAAAGTAGCAGCAGTGACGATGAGAGTGCCCACCGTACGGTGACGGTGGCGAGCGGGAGCAAGCGCACCAAAACCACGTTCGGTTCCTCAACGATGGATGAGTACTTGCTCGGATCACGCAAGTTAAAAGCATTCCCAGTGGCGATGAGTCTTGTGGCGGGATACATATCAGGGGTAACGATACTGGGAACTCCGGCGGAGATTTACAACTTCGGCACGCAGTACTGGTTGATCGTGATTCCCATTCTGCTGAT GGGTGTTGCGGTTTGTACCGTGTATCTGCCGGTGTTTTGCTCGCTGAAGCTGAACTCTTCGTACGAATATCTGGAG CTGCGGTTCAGTTCGTCCGTTCGTTCGATAGCGTCAGTGATGTTTGTCATAGACGAGCTGCTTTTCCTACCGATGATCATCTATGTGCCAGCGTTAGCTTTCAATCAAGTAACCGGCTTCAATCTGTACGTGATCGGTGCGATCGTGTGCGTAGTTTGTATATTTTACACATTACTGGGAGGCATCAAAGCGGTGGTATT ]
[+] EMBL BM640072 [ cCGCCGGAAAGTAGCAGCAGTGACGATGAGAGTGCCCACCGTACGGTGACGGTGGCGAGCGGGAGCAAGCGCACCAAAACCACGTTCGGTTCCTCAACGATGGATGAGTACTTGCTCGGATCACGCAAGTTAAAAGCATTCCCAGTGGCGATGAGTCTTGTGGCGGGATACATATCAGGGGTAACGATACTGGGAACTCCGGCGGAGATTTACAACTTCGGCACGCAGTACTGGTTGATCGTGATTCCCATTCTGCTGAT GGGTGTTGCGGTTTGTACCGTGTATCTGCCGGTGTTTTGCTCGCTGAAGCTGAACTCTTCGTACGAATATCTGGAG CTGCGGTTCAGTTCGTCCGTTCGTTCGATAGCGTCAGTGATGTTTGTCATAGACGAGCTGCTTTTCCTACCGATGATCATCTATGTGCCAGCGTTAGCTTTCAATCAAGTAACCGGCTTCAATCTGTACGTGATCGGTGCGATCGTGTGCGTAGTTTGTATATTTTACACATTACTGGGAGGCATCAAAGCGGTGGTATTTACCGATGCGTGGCAAGTGGTCGTAATGTTCATCTCGGTGGTAGTTGTCGTAATTATCGGAACGATCGCAATCGGCGGCCCTGATGTCATCTGGGACCGGTCGGTAGAAGGTGGCCGGATAGACTTCTTCAACTTTAATCCCTCGATGTACGAGCGACAA]
consensusID : consensus_6030#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence
[CCGCCCACGCGTCCGATAATTTGTCCAGTCACTCCAAACCCTCCAACGAACATCAATAGGGGTGGGCCCTGGCTCTGTGATGATGATTCTTTATCGCAAGTCCCACTGAGCGTGGTTCCATTTTTTATGACCGGTTTTACACCGACTGTCCGTTATCGCGTGTGTGTGTGTCTAGATGGTGGTGCAGGGGGTCAAAGTCTCAGTTTACGTTTCTGTGAAAATGTAGACGTGCGCCTGATTCGTCGTACCGTATCGTGCCGTCCAGTGCGCCAAAGCATTAAATCCATATAACGCCTTGTCGATTGTCAACACGAGGATGGCGTCCGGGAGAAGTACACTGGCGGAAAGCCTCCGGGAGCTGTACCAGTTCAGTGTGGTCGACTACTGCATGTTTGGTGCGATGCTGATCCTTTCCGCTGCCTGCGGGATCTACTTTGGGTTCTTCAAGCGGAACAAGGGCGGTGATTCGGAGACGCCGGAAAGTAGCAGCAGTGACGATGAGAGTGCCCACCGTACGGTGACGGTGGCGAGCGGAAGCAAGCGCACCAAAACCACGTTCGGTTCCTCAACGATGGATGAGTACTTGCTGGGATCGAGGAAGTTGAAGGCGTTCCCGGTAGCGATGAGTCTTGTGGCGGGATACATATCAGGGGTAACGATACTGGGAACTCCGGCGGAGATTTACAA]
[+] EMBL BM655705 [CCGCCCACGCGTCCGATAATTTGTCCAGTCACTCCAAACCCTCCAACGAACATCAATAGGGGTGGGCCCTGGCTCTGTGATGATGATTCTTTATCGCAAGTCCCACTGAGCGTGGTTCCATTTTTTATGACCGGTTTTACACCGACTGTCCGTTATCGCGTGTGTGTGTGTCTAGATGGTGGTGCAGGGGGTCAAAGTCTCAGTTTACGTTTCTGTGAAAATGTAGACGTGCGCCTGATTCGTCGTACCGTATCGTGCCGTCCAGTGCGCCAAAGCATTAAATCCATATAACGCCTTGTCGATTGTCAACACGAGGATGGCGTCCGGGAGAAGTACACTGGCGGAAAGCCTCCGGGAGCTGTACCAGTTCAGTGTGGTCGACTACTGCATGTTTGGTGCGATGCTGATCCTTTCCGCTGCCTGCGGGATCTACTTTGGGTTCTTCAAGCGGAACAAGGGCGGTGATTCGGAGACGCCGGAAAGTAGCAGCAGTGACGATGAGAGTGCCCACCGTACGGTGACGGTGGCGAGCGGAAGCAAGCGCACCAAAACCACGTTCGGTTCCTCAACGATGGATGAGTACTTGCTGGGATCGAGGAAGTTGAAGGCGTTCCCGGTAGCGATGAGTCTTGTGGCGGGATACATATCAGGGGTAACGATACTGGGAACTCCGGCGGAGATTTACAA]
consensusID : consensus_6030#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 499 fasta sequence
[CCGGCGCAGAAGGAAGCAGGGCAGTGCCGGTGAAGGCAGGACTTGCCCCGTTGTAGACAAGGGGAATGTGCAATTGAAGGTGTCGTCGTGCCAGCAATCGTTCGGTAACGTGTTGGAGGTGTGTTTTTTTCTTTTTCGTAAGAGATGGATTCTAGCAGAGGCACCGTGCTCGACAGCATCCGTGAGCTGTATCAGTTCGGTGTGGTGGATTACTGTATGTTTGCCGCAATGTTGATCCTTTCCGCTGCCTGCGGGATCTACTTTGGGTTCTTCAAACGCACCAAAGCGAAGGATACACCCACGGCCACGGATACGAGTGATCTCGATCTGGGTGAAAATCCTCCCACGTTAGGATCGGTGGAGAGTAAGACTCCGATCAGTCCGTTTGGATCGTCCACGATCGATGAGTATTTGCTGGGATCACGCAAGCTAAAAGCATTCCCAGTGGCGATGAGTCTGGTGGCGGGATACATATCCGGTGTAACGATACTGGGCACAC]
[+] EMBL BM649941 [CCGGCGCAGAAGGAAGCAGGGCAGTGCCGGTGAAGGCAGGACTTGCCCCGTTGTAGACAAGGGGAATGTGCAATTGAAGGTGTCGTCGTGCCAGCAATCGTTCGGTAACGTGTTGGAGGTGTGTTTTTTTCTTTTTCGTAAGAGATGGATTCTAGCAGAGGCACCGTGCTCGACAGCATCCGTGAGCTGTATCAGTTCGGTGTGGTGGATTACTGTATGTTTGCCGCAATGTTGATCCTTTCCGCTGCCTGCGGGATCTACTTTGGGTTCTTCAAACGCACCAAAGCGAAGGATACACCCACGGCCACGGATACGAGTGATCTCGATCTGGGTGAAAATCCTCCCACGTTAGGATCGGTGGAGAGTAAGACTCCGATCAGTCCGTTTGGATCGTCCACGATCGATGAGTATTTGCTGGGATCACGCAAGCTAAAAGCATTCCCAGTGGCGATGAGTCTGGTGGCGGGATACATATCCGGTGTAACGATACTGGGCACAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6030#0 ------------------------------------------------------------
consensus_6030#1 CCGCCCACGCGTCCGATAATTTGTCCAGTCACTCCAAACCCTCCAACGAACATCAATAGG 60
consensus_6030#2 ------------------------------------------------------------
consensus_6030#0 ------------------------------------------------------------
consensus_6030#1 GGTGGGCCCTGGCTCTGTGATGATGATTCTTTATCGCAAGTCCCACTGAGCGTGGTTCCA 120
consensus_6030#2 ------------------------------------------------------------
consensus_6030#0 ------------------------CCGGTACGCT-TAGCGCGCTAGC-TAGCGAGAACAA 34
consensus_6030#1 TTTTTTATGACCGGTTTTACACCGACTGTCCGTTATCGCGTGTGTGTGTGTCTAGATGGT 180
consensus_6030#2 ------------------------------------------CCGGCGCAGAAGGAAGCA 18
* **
consensus_6030#0 AACGCGTGTGCCGGGTAGCTCGTTGTAA---TACGCGAGCATCGTGAACCACTTCTACCA 91
consensus_6030#1 GGTGCAGGGGGTCAAAGTCTCAGTTTACGTTTCTGTGAAAATGTAGACGTGCGCCTGATT 240
consensus_6030#2 GGGCAGTGCCGGTGAAGGCAGGACTTGCCCCGTTGTAGACAAGGGGA---ATGTGCAATT 75
* * * * * **
consensus_6030#0 CAAC-CACC--ACCACCACCACCACCGCGGGGAAGGTCGCTCGCGTTTTTTTTGCTTATC 148
consensus_6030#1 CGTCGTACCGTATCGTGCCGTCCAGTGCGCCAAAGCATTAAATCCATATAACGCCTTGTC 300
consensus_6030#2 GAAGGTGTC--GTCGTGCCAGCAATCGTTCGGTAACGTGTTGGAGGTGTGTTTTTTTCTT 133
* * * * * * * * * ** *
consensus_6030#0 GCTTTCGGTGCTCAAGATGGCGTCCGGGAGAAGTACATTGGCGGAAAGCCTCCGAGAGCT 208
consensus_6030#1 GATTGTCAACACGAGGATGGCGTCCGGGAGAAGTACACTGGCGGAAAGCCTCCGGGAGCT 360
consensus_6030#2 TTTCGTAA-----GAGATGGATTCTAGCAGAGGCACCGTGCTCGACAGCATCCGTGAGCT 188
* ***** ** * *** * ** ** ** *** **** *****
consensus_6030#0 GTACCAGTTCAGTGTGGTCGACTACTGCATGTTTGGTGCGATGCTGATCCTTTCCGCTGC 268
consensus_6030#1 GTACCAGTTCAGTGTGGTCGACTACTGCATGTTTGGTGCGATGCTGATCCTTTCCGCTGC 420
consensus_6030#2 GTATCAGTTCGGTGTGGTGGATTACTGTATGTTTGCCGCAATGTTGATCCTTTCCGCTGC 248
*** ****** ******* ** ***** ******* ** *** ****************
consensus_6030#0 CTGCGGGATCTACTTTGGGTTCTTCAAGCGGAACAAGGGCGGTGATTCGGAGACGCCGGA 328
consensus_6030#1 CTGCGGGATCTACTTTGGGTTCTTCAAGCGGAACAAGGGCGGTGATTCGGAGACGCCGGA 480
consensus_6030#2 CTGCGGGATCTACTTTGGGTTCTTCAAACGCACCAAAGCGAAGGATACACCCACGGCCAC 308
*************************** ** * *** * *** * *** *
consensus_6030#0 AAGTAGCAGCAGTGACGATGAGAGTGCCCACCGTACGGTGACGGTGGCGAGCGGGAGCAA 388
consensus_6030#1 AAGTAGCAGCAGTGACGATGAGAGTGCCCACCGTACGGTGACGGTGGCGAGCGGAAGCAA 540
consensus_6030#2 GGATACGAGTGATCTCGATCTGGGTGAAAATCCTCCCACGTTAGGATCGGTGGAGAGTAA 368
** ** * **** * *** * * * * * * ** * ** **
consensus_6030#0 GCGCACCAAAACCACGTTCGGTTCCTCAACGATGGATGAGTACTTGCTCGGATCACGCAA 448
consensus_6030#1 GCGCACCAAAACCACGTTCGGTTCCTCAACGATGGATGAGTACTTGCTGGGATCGAGGAA 600
consensus_6030#2 GACTCCGATCAGTCCGTTTGGATCGTCCACGATCGATGAGTATTTGCTGGGATCACGCAA 428
* * * * **** ** ** ** ***** ******** ***** ***** * **
consensus_6030#0 GTTAAAAGCATTCCCAGTGGCGATGAGTCTTGTGGCGGGATACATATCAGGGGTAACGAT 508
consensus_6030#1 GTTGAAGGCGTTCCCGGTAGCGATGAGTCTTGTGGCGGGATACATATCAGGGGTAACGAT 660
consensus_6030#2 GCTAAAAGCATTCCCAGTGGCGATGAGTCTGGTGGCGGGATACATATCCGGTGTAACGAT 488
* * ** ** ***** ** *********** ***************** ** ********
consensus_6030#0 ACTGGGAACTCCGGCGGAGATTTACAACTTCGGCACGCAGTACTGGTTGATCGTGATTCC 568
consensus_6030#1 ACTGGGAACTCCGGCGGAGATTTACAA--------------------------------- 687
consensus_6030#2 ACTGGGCACAC------------------------------------------------- 499
****** ** *
consensus_6030#0 CATTCTGCTGATGGGTGTTGCGGTTTGTACCGTGTATCTGCCGGTGTTTTGCTCGCTGAA 628
consensus_6030#1 ------------------------------------------------------------
consensus_6030#2 ------------------------------------------------------------
consensus_6030#0 GCTGAACTCTTCGTACGAATATCTGGAGCTGCGGTTCAGTTCGTCCGTTCGTTCGATAGC 688
consensus_6030#1 ------------------------------------------------------------
consensus_6030#2 ------------------------------------------------------------
consensus_6030#0 GTCAGTGATGTTTGTCATAGACGAGCTGCTTTTCCTACCGATGATCATCTATGTGCCAGC 748
consensus_6030#1 ------------------------------------------------------------
consensus_6030#2 ------------------------------------------------------------
consensus_6030#0 GTTAGCTTTCAATCAAGTAACCGGCTTCAATCTGTACGTGATCGGTGCGATCGTGTGCGT 808
consensus_6030#1 ------------------------------------------------------------
consensus_6030#2 ------------------------------------------------------------
consensus_6030#0 AGTTTGTATATTTTACACATTACTGGGAGGCATCAAAGCGGTGGTATTTACCGATGCGTG 868
consensus_6030#1 ------------------------------------------------------------
consensus_6030#2 ------------------------------------------------------------
consensus_6030#0 GCAAGTGGTCGTAATGTTCATCTCGGTGGTAGTTGTCGTAATTATCGGAACGATCGCAAT 928
consensus_6030#1 ------------------------------------------------------------
consensus_6030#2 ------------------------------------------------------------
consensus_6030#0 CGGCGGCCCTGATGTCATCTGGGACCGGTCGGTAGAAGGTGGCCGGATAGACTTCTTCAA 988
consensus_6030#1 ------------------------------------------------------------
consensus_6030#2 ------------------------------------------------------------
consensus_6030#0 CTTTAATCCCTCGATGTACGAGCGACAA 1016
consensus_6030#1 ----------------------------
consensus_6030#2 ----------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||