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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6031#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 827 fasta sequence
[CCGGTCCGTGCATGTGCGTGCGTCGTGATAGCAGCATCACCATGAATCGTGTCATTTTGGTGTCATTTTTGTGCGTCTGTGTGCTCGGGTACATATCCTCCGTCGATGGAGTTCCGGCACGTGGGAAGCAACCGGCCAATAGGTCGTCGGAAGAATCGGGCGAAATGGAACAATCGAACAGCCGGGAGCGTGCAATGGAACGTAAGGGCCCGGGAAAGCGACAGAAGGGACAATCGTCGAAGGAGAGTGGCGAGATGAAAATGAAGCGTCCCCGACCGCCTCCACGTCGAAGGAATAAGAATAGGAACAAAAATCGATCAACGACCAGCACCACAACGACTTCCACGACAACGGTTTCACCAGCGTCGAACCCTTCGAGCACTGCTTCAGTTTCCCAGTCCACCACGACGACGCCAGTTGCAACTAGAGCAGCTACATCCACTACTCCGGTATCAACCACTTTCAGCCCGCGAGTACATCCACAAACTCCGTCATCTACGAATTCAGCTACGAGTACATCCAACAACTTCCGTCATCTAACAAAATCAGGCTTACCAAGTACATCAACCAAGGCTCGGTCTTTCTACAAAGGCTTCTCAAGGCACTAACCCCAAGGGAACCATCCAACGAACCCCTTACAAACTTACTTAAGGGTCCCGGGACCAACCCCAAACGGGGGAGATTTGGAAACACCTTTTTTAACCCAAGTTCCAGGTTTCTTTTTTTCCACCCAACAAAAACCGGGGGGCCCGAAACCGGTTCCCCCACCCGGAAACCCCGGTCCTTGGGGGCCGTGGCCCCAAATTAAACCCGGTTCATCCTAAATT]
[+] EMBL BM657725 [CCGGTCCGTGCATGTGCGTGCGTCGTGATAGCAGCATCACCATGAATCGTGTCATTTTGGTGTCATTTTTGTGCGTCTGTGTGCTCGGGTACATATCCTCCGTCGATGGAGTTCCGGCACGTGGGAAGCAACCGGCCAATAGGTCGTCGGAAGAATCGGGCGAAATGGAACAATCGAACAGCCGGGAGCGTGCAATGGAACGTAAGGGCCCGGGAAAGCGACAGAAGGGACAATCGTCGAAGGAGAGTGGCGAGATGAAAATGAAGCGTCCCCGACCGCCTCCACGTCGAAGGAATAAGAATAGGAACAAAAATCGATCAACGACCAGCACCACAACGACTTCCACGACAACGGTTTCACCAGCGTCGAACCCTTCGAGCACTGCTTCAGTTTCCCAGTCCACCACGACGACGCCAGTTGCAACTAGAGCAGCTACATCCACTACTCCGGTATCAACCACTTTCAGCCCGCGAGTACATCCACAAACTCCGTCATCTACGAATTCAGCTACGAGTACATCCAACAACTTCCGTCATCTAACAAAATCAGGCTTACCAAGTACATCAACCAAGGCTCGGTCTTTCTACAAAGGCTTCTCAAGGCACTAACCCCAAGGGAACCATCCAACGAACCCCTTACAAACTTACTTAAGGGTCCCGGGACCAACCCCAAACGGGGGAGATTTGGAAACACCTTTTTTAACCCAAGTTCCAGGTTTCTTTTTTTCCACCCAACAAAAACCGGGGGGCCCGAAACCGGTTCCCCCACCCGGAAACCCCGGTCCTTGGGGGCCGTGGCCCCAAATTAAACCCGGTTCATCCTAAATT]
consensusID : consensus_6031#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 702 fasta sequence
[CCGGTGCGTGCGTCGTGAT---AGCAGCATCACCATGAATCGTGTCATTTTGGTGTCATTTTTGTGCGTCTGTGTGCTCGGGTACATATCCTCCGTCGATGGAGTTCCGGCACGTGGGAAGCAACCGGCCAATAGGTCGTCGGAAGAATCGGGCGAAATGGAACAATCGAACAGCCGGGAGCGTGCAATGGAACGTAAGGGCCCGGGAAAGCGACAGAAGGGACAATCGTCGAAGGAGAGTGGCGAGATGAAAATGAAGCGTCCCCGACCGCCTCCACGTCGAAGGAATAAGAATAGGAACAAAAATCGATCAACGACCAGCACCACAACGACTTCCACGACAACGGTTTCACCAGCGTCGAACCCTTCGAGCACTGCTTCAGTTTCCCAGTCCACCACGACGACGCCAGCCGCAACTAGAGCAGCTACATCCACTACTCCGGTATCAACTACTTCAGCCGCGAGTACATCCACAACTCCGTCATCTACGACTTCAGCTACGAGTACATCCACAACTCCGTCATCTACGACTTCAGCTACGAGTACATCAACAAGCTCGTCTTCTACAACGCTCTCAAGCACTACCCAAGGACCATCAACGACCCCTACGACTACTACGTCCAGCACAACCACAACGGCGAGTTCGACCACTTCTACCACATCCAGCTCTTCTTCCACCACAGACCGGGGCCGACCGTCGCCACC]
[+] EMBL BM613914 [CCGGTGCGTGCGTCGTGAT AGCAGCATCACCATGAATCGTGTCATTTTGGTGTCATTTTTGTGCGTCTGTGTGCTCGGGTACATATCCTCCGTCGATGGAGTTCCGGCACGTGGGAAGCAACCGGCCAATAGGTCGTCGGAAGAATCGGGCGAAATGGAACAATCGAACAGCCGGGAGCGTGCAATGGAACGTAAGGGCCCGGGAAAGCGACAGAAGGGACAATCGTCGAAGGAGAGTGGCGAGATGAAAATGAAGCGTCCCCGACCGCCTCCACGTCGAAGGAATAAGAATAGGAACAAAAATCGATCAACGACCAGCACCACAACGACTTCCACGACAACGGTTTCACCAGCGTCGAACCCTTCGAGCACTGCTTCAGTTTCCCAGTCCACCACGACGACGCCAGTTGCAACTAGAGCAGCTACATCCACTACTCCGGTATCAACCACTTCAGCCGCGAGTACATCCACAACTCCGTCATCTACGACTTCAGCTACGAGTACATCCACAACTCCGTCATCTACGACATCAGCTACGAGTACATCAACAAGCTCGTCTTCTACAACGCTCTCAAGCACTACCCAAGGACCATCAACGACCCCTACGACTACTACGTCCAGCACAACCACAACGGCGAGTTCGACCACTTCTACCACATCCAGCTCTTCTTCCACCACAGACCGGGGCCGACCGTCGCCACC]
[+] EMBL BX628419 [ CGTGCGCCGTGATAGCAGCAGCATCACCATGAATCGTGTCATTTTGGTGTCATTTTTGTGCGTCTGTGTGCTCGGGTACATATCCTCCGTCGATGGAGTTCCGGCACGTGGGAAGCAACCGGCCAATAGGTCGTCGGAAGAATCGGGCGAAATGCAACAATCGAACAGCCGGGAGCGTGCAATGGAACGTAAGGGCCCGGGAAAGCGACAGAAGGGACAATCGTCGAAGGAGAGTGGCGAGATGAAAATGAAGCGTCCCCGACCGCCGCCACGTCGAAGGAATAAGAATAGGAACAAAAATCGATCAACGACCAGCACCACAACGACTTCCACGACAACGGTTTCACCAGCGACGAACCCTTCGAGCACTGCTTCAGTTTCCCAGTCCACCACGACGACGCCAGCCGCAACTAGAGCAGCTACATCCACTACTCCGATATCAACTACTTCAGCCGCGAGTACATCCACAACTCCGTCATCTACGACTTCAGCTACGAGTACATCCACAACTCCGTCATCTACGACTTCAGCTACGAGTACATCAACAAGCT ]
[+] EMBL BM606179 [ TCCCAGTCCACCACCACGACGCCGGCCGCAACTAGAGCAGCCACATCCACTACTCCGGTATCAACTACTTCAGCCGCGAGTACATCCACAACTCCGTCATCTACGACTTCAGCTACGAGTACATCCACAACTCCGTCATCTACGACTTCAGCTACGAGTACATCAACAAGCTCGTCTTCTACAACGCTTTCAAGCACTACCCAAGGACC ]
consensusID : consensus_6031#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 508 fasta sequence
[AGAATCGGCACGAGGGTNATAAATGAAGCGTCCCCGACCGCCGCCACGTTGAAAGGGAATAAGAATAGGAACAAAAATCGATCAACGACCAGACCACAACGACTTTCACGGACAACGGTTTCACCAGCGACGAAACCTTTGAGCACTGCTTTCAGTTTCCCAGTCACCACGGAACGACGCCAGGCCGCAAACTAAGAGACAGCTAACATTCACTAAATTCCGGNATATCAACTACTTCAGNGCCGCGGAGTACATTCACAAACTCCCGGGTCATTCTAACGACTTCAGGCTACGAGGTACATCCACAAACTTCCGTCATCTACGAACTTTTCAAGCTTACAGAAGTTACCATTCAAGCAAGGCTCGTTCTTCTACAACGCTTTCACATGCACTACCCAAGGACCATCAAACGAACCCTTAACGACTTACTTAACGTTTCAGNCGACGAACCACAANGTGGCGAAGGTTCCGAACCACATTCTTACACACATTCCNAGGCTCCTTTCTT]
[+] EMBL BX469660 [AGAATCGGCACGAGGGTNATAAATGAAGCGTCCCCGACCGCCGCCACGTTGAAAGGGAATAAGAATAGGAACAAAAATCGATCAACGACCAGACCACAACGACTTTCACGGACAACGGTTTCACCAGCGACGAAACCTTTGAGCACTGCTTTCAGTTTCCCAGTCACCACGGAACGACGCCAGGCCGCAAACTAAGAGACAGCTAACATTCACTAAATTCCGGNATATCAACTACTTCAGNGCCGCGGAGTACATTCACAAACTCCCGGGTCATTCTAACGACTTCAGGCTACGAGGTACATCCACAAACTTCCGTCATCTACGAACTTTTCAAGCTTACAGAAGTTACCATTCAAGCAAGGCTCGTTCTTCTACAACGCTTTCACATGCACTACCCAAGGACCATCAAACGAACCCTTAACGACTTACTTAACGTTTCAGNCGACGAACCACAANGTGGCGAAGGTTCCGAACCACATTCTTACACACATTCCNAGGCTCCTTTCTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6031#0 CCGGTCCGTGCATGTGCGTGCGTCGTGATAGCAGCATCACCATGAATCGTGTCATTTTGG 60
consensus_6031#1 ----------CCGGTGCGTGCGTCGTGATAGCAGCATCACCATGAATCGTGTCATTTTGG 50
consensus_6031#2 ------------------------------------------------------------
consensus_6031#0 TGTCATTTTTGTGCGTCTGTGTGCTCGGGTACATATCCTCCGTCGATGGAGTTCCGGCAC 120
consensus_6031#1 TGTCATTTTTGTGCGTCTGTGTGCTCGGGTACATATCCTCCGTCGATGGAGTTCCGGCAC 110
consensus_6031#2 ------------------------------------------------------------
consensus_6031#0 GTGGGAAGCAACCGGCCAATAGGTCGTCGGAAGAATCGGGCGAAATGGAACAATCGAACA 180
consensus_6031#1 GTGGGAAGCAACCGGCCAATAGGTCGTCGGAAGAATCGGGCGAAATGGAACAATCGAACA 170
consensus_6031#2 ------------------------------------------------------------
consensus_6031#0 GCCGGGAGCGTGCAATGGAACGTAAGGGCCCGGGAAAGCGACAGAAGGGACAATCGTCGA 240
consensus_6031#1 GCCGGGAGCGTGCAATGGAACGTAAGGGCCCGGGAAAGCGACAGAAGGGACAATCGTCGA 230
consensus_6031#2 -------------------------------------------------AGAATCGGC-- 9
* ***** *
consensus_6031#0 AGGAGAGTGGCGAGATGAAAATGAAGCGTCCCCGACCGCCTCCACGTCGAA--GGAATAA 298
consensus_6031#1 AGGAGAGTGGCGAGATGAAAATGAAGCGTCCCCGACCGCCTCCACGTCGAA--GGAATAA 288
consensus_6031#2 ACGAGGGTNAT-------AAATGAAGCGTCCCCGACCGCCGCCACGTTGAAAGGGAATAA 62
* *** ** ********************** ****** *** *******
consensus_6031#0 GAATAGGAACAAAAATCGATCAACGACCAGCACCACAACGACTTCCACG-ACAACGGTTT 357
consensus_6031#1 GAATAGGAACAAAAATCGATCAACGACCAGCACCACAACGACTTCCACG-ACAACGGTTT 347
consensus_6031#2 GAATAGGAACAAAAATCGATCAACGACCAG-ACCACAACGACTTTCACGGACAACGGTTT 121
****************************** ************* **** **********
consensus_6031#0 CACCAGCGTCGAACCCTTCGAGCACTGCTT-CAGTTTCCCAGTCCACCACG--ACGACGC 414
consensus_6031#1 CACCAGCGTCGAACCCTTCGAGCACTGCTT-CAGTTTCCCAGTCCACCACG--ACGACGC 404
consensus_6031#2 CACCAGCGACGAAACCTTTGAGCACTGCTTTCAGTTTCCCAGTC-ACCACGGAACGACGC 180
******** **** **** *********** ************* ****** *******
consensus_6031#0 CAG-TTGCAACTAGAG---CAGCTA-CATCCACTA--CTCCGGTAT--CAACCACTTTCA 465
consensus_6031#1 CAG-CCGCAACTAGAG---CAGCTA-CATCCACTA--CTCCGGTAT--CAACTACTT-CA 454
consensus_6031#2 CAGGCCGCAAACTAAGAGACAGCTAACATTCACTAAATTCCGGNATATCAACTACTTCAG 240
*** **** ** ****** *** ***** ***** ** **** ****
consensus_6031#0 GCCCGCG-AGTACATCCACAAACTCC---GTCATCT--ACGAATTCAG-CTACGAG-TAC 517
consensus_6031#1 GCC-GCG-AGTACATCCACAA-CTCC---GTCATCT--ACGACTTCAG-CTACGAG-TAC 504
consensus_6031#2 NGCCGCGGAGTACATTCACAAACTCCCGGGTCATTCTAACGACTTCAGGCTACGAGGTAC 300
* *** ******* ***** **** ***** **** ***** ******* ***
consensus_6031#0 ATCCAACAACTTCCGTCATCTAACAAAAT--CAGGCTTACCAAGTACA----TCAACCAA 571
consensus_6031#1 ATCCA-CAACT-CCGTCATCTA-CGACTT--CAG--CTAC-GAGTACA----TCAAC--A 550
consensus_6031#2 ATCCACAAACTTCCGTCATCTACGAACTTTTCAAGCTTACAGAAGTTACCATTCAAGCAA 360
***** **** ********** * * ** *** * * **** *
consensus_6031#0 GGCTCGGTCTTTCTACAAAGGCTTCTCAAGGCACTAACCCCAAGGGAACCATCCAACGAA 631
consensus_6031#1 AGCTCG--TCTTCTACAACG--CTCTCAAG-CACTA--CCCAAGG--ACCATC-AACGA- 599
consensus_6031#2 GGCTCG-TTCTTCTACAACGCTTTCACATG-CACTA--CCCAAGG--ACCATCAAACGAA 414
***** ******** * ** ** * ***** ******* ****** *****
consensus_6031#0 CCCCTTACAAACTTACTTAAGGGTCCCGG-GACCAACCCCAAACGGGGGAGATTTGGAAA 690
consensus_6031#1 -CCCCTACGA--CTACT---ACGTCCAGC-A--CAACCACAAC----GGCGAGTTCGA-- 644
consensus_6031#2 CCCTTAACGA-CTTACTTAACGTTTCAGNCGACGAACCACAANGTGGCGAAGGTTCCGAA 473
** ** * **** * * * **** *** * **
consensus_6031#0 CACCTTTTTTAACCCAAGTTCCAGGTTTCTTTTTTTCCACCCAACAAAAACCGGGGGGCC 750
consensus_6031#1 --CCACTTCTACCACA---TCCAG----CTCTTCTTCCACC----ACAGACCGGGG---C 688
consensus_6031#2 CCACATTCTTA-CACACATTCCNAGGCTCCTTTCTT------------------------ 508
* * ** * ** *** * ** **
consensus_6031#0 CGAAACCGGTTCCCCCACCCGGAAACCCCGGTCCTTGGGGGCCGTGGCCCCAAATTAAAC 810
consensus_6031#1 CGA--CCGTCGCCACC-------------------------------------------- 702
consensus_6031#2 ------------------------------------------------------------
consensus_6031#0 CCGGTTCATCCTAAATT 827
consensus_6031#1 -----------------
consensus_6031#2 -----------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||