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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6032#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 901 fasta sequence
[AGATCGCAGCAGGNCTNACAGTATCCAGCGACGCTTCGACACGAACATGCTGCTTTCGCTGAGCACATAAGCATCGATCTGGTCGTTTCTGGTGAAGCTGATGATTTCGCAACGTACGGTTTTCAGCAGTGCATCCCACATCGGTCTGGGGATCTTTCGCAGATCGGCATTCTTGCACGCTGTCGACGGTTCGAACCAGATTTCCAGCAGCTTTTCCACACCTTCGAAAAAGTGCATATCCTCCCTGCTACTACTATTACTACTGCTATTACTTAAGTCCTCCGACTCCGCCATTCTGTCTGGTGTACAACTTGCTTTGTTTTAGCGCGCTTCCGCTTGCTCTCAC-------TCTCCTTTCTCGCTTGATGACGCGAATTCACCGTTTGACGGCGGTCGT--AGAGAGCCTTTTTTTTGGTTGTGAAGTAATATTTATCCCAAAACCTTACTCGGGTCCATTTGGGATAAAATGGGCAAAACGGCACGGACACGGAGTGTGTGTTGAAGTTGAAGTGATTTC-AAACAAACAAAAAAAAAACGGCCACAGACTTGCACGTTCCTTTCCTTCCTTCTATTTAGTCTAGAAGAATCCGTTCGACGCGTCGTCGGTTGCAAAAAATCGAACGTACCAAGTAAGGGTGTGTGTAAATGTGGAAGTATGAGTGTGTGCGGGAATTAACCGGGATATAAAAAAAGTTTAACTAATGCACTTTCACCAAAAACTAACGAGGGAGGTAAGGAAAATAGGGACCACTCGCTTTTGTCGCTATTTTCCCGTTTTGTTTCTTTGCGCTTTTGCACTTTTGCTTGCTGCTGCTGCTGCTGCTGCTAAGAAAAATCGATCTCAGCCGCGAGAGAGAGGACGCTGTGCGGGAGGGGTGAGTCTTTTCTACGCGGGCGTCCGCGG]
[+] EMBL AL696231 [AGATCGCAGCAGGNCTNACAGTATCCAGCGACGCTTCGACACGAACATGCTGCTTTCGCTGAGCACATAAGCATCGATCTGGTCGTTTCTGGTGAAGCTGATGATTTCGCAACGTACGGTTTTCAGCAGTGCATCCCACATCGGTCTGGGGATCTTTCGCAGATCGGCATTCTTGCACGCTGTCGACGGTTCGAACCAGATTTCCAGCAGCTTTTCCACACCTTCGAAAAAGTGCATATCCTCCCTGCTACTACTATTACTACTGCTATTACTTAAGTCCTCCGACTCCGCCATTCTGTCTGGTGTACAACTTGCTTTGTTTTAGCGCGCTTCCGCTTGCTCTCAC TCTCCTTTCTCGCTTGATGACGCGAATTCACCGTTTGACGGCGGTCGT AGAGAGCC TTTTTTGGTTGTGAAGTAATATTTATCCCAAAA CTTACTCGGGTCCATTTGGGATAAAATGGGC AAACGGCACGGACACGGAGTGTGTGTGAAAGTTGAAGTGATTTCAAAACAAACAAAAAAAAAACCGGCACAGACTTGgca ]
[-] EMBL BM621185 [ TCTGGTCGTTTCTGGTGAAGCTGATGATTTCGCATCGTACGGTTTTCAGCAGTGCATCCCACATCGGTCTGGGGATCTTTCGCAGATCGGCATTCTTGCACGCTGTCGACGGTTCGAACCAGATTTCCAGCAGCTTTTCCACACCTTCGAAAAAGTGCATATCCTCCCTGCTACTACTATTACTACTGCTATTACTTAAGTCCTCCGACTCCGCCATTCTGTCTGGTGTACAACTTGCTTTGTTTTAGCGCGCTTCCGCTTGCTCTCACTCTCCTTTCTCCTTTCTCGCTTGATGACGCGAATTCACCGTTTGACGGCGGTCGTAGAGAGAGCCTTTTTTTTGGTTGTGAAGTAATATTTATCCCAAAACCTTACTCGGGTCCATTTGGGATAAAGTGGGCAAAACGGCACGAACACGGAGTGTGTGTTGCAGTTGAAGTGATTTC AAACAAACAAACAAAAAACGGCCACAGACTTGCACGTTCCTTTCCTTCCTTCTATTTAGTCTAGAAGAATCCGTTCGACGCGTCGTCGGTTGCAAAAAATCGAACGTACCAAGTAAGGGTGTGTGTAAATGTGGAAGTATGAGTGTGTGCGGGAATTAACCGGGATATAAAAAAAGTTTAACTAATGCACTTTCACCAAAAACTAACGAGGGAGGTcgg ]
[-] EMBL BM599775 [ GTGCATATCCTCCCTGCTACTACTATTACTACTGCTATTACTTAAGTCCTCCGACTCCGCCATTCTGTCTGGTGTACAACTTGCTTTGTTTTAGCGCGCTTCCGCTTGCTCTCAC TCTCCTTTCTCGCTTGATGACGCGAATTCACCGTTTGACGGCGGTCGT AGAGAGCCTTTTTTTTGGTTGTGAAGTAATATTTATCCCAAAACCTTACTCGGGTCCATTTGGGATAAAATGGGCAAAACGGCACGGACACGGAGTGTGTG TGAAGTTGAAGTGATTTC AAACAAAC AAAAAAAAACGGCCACAGACTTGCACGTTCCTTTCCTTCCTTCTATTTAGTCTAGAAGAATCCGTTCGACGCGTCGTCGGTTGCAAAAAATCGAACGTACCAAGTATGGGTGTGTGTAAATGTGGAAGTATGAGTGTGTGCGGGAATTAACCGGGATAGAAATAAAGATAAACTAATGCACTTTCACCAAAAACTAACGAGGGAGGTAAGGAAAATAGGGACCACTCGCTTTTGTCGCTATTTTCCCGTTTTGTTTCTTTGCGCTTTTGCACTTTTGCTTGCTGCTGCTGCTGCTGCTGCTAAGAAAAATCGATCTCAGCCGCGAGAGAGAGGACGCTGTGCGGGAGGGGTGAGTCTTTTCTACGCGG ]
[-] EMBL BM652480 [ t TCTCCTTTCTCGCTTGATGACGCGAATTCACCGTTTGACGGCGGTCGTAGAGAGAGCCTTTTTTTTGGTTGTGAAGTAATATTTATCCCAAAACCTTACTCGGGTCCATTTGGGATAAAGTGGGCAAAACGGCACGAACACGGAGTGTGTGTTGCAGTTGAAGTGATTTC AAACAAACAAACAAAAAACGGCCACAGACTTGCACGTTCCTTTCCTTCCTTCTATTTAGTCTAGAAGAATCCGTTCGACGCGTCGTCGGTTGCAAAAAATCGAACGTACCAAGTAAGGGTGTGTGTAAATGTGGAAGTATGAGTGTGTGCGGGAATTAACCGGGATATAAAAAAAGTTTAACTAATGCACTTTCACCAAAAACTAACGAGGGAGGTAAGGAAAATAGGGACCACTCGCTTTTGTCGCTATTTTCCCGTTTTATTTCTTTGCGCTTTTGCACTTTTGCTTGCTACTGCTGCTGCTGCTGCTAAGAAAAATCGATCTCAGCCGCGAGAGAGAGGACGCTGTGCGGGAGGGGTGAGTCTTTTCTACCCACGCGTCCGCGG]
consensusID : consensus_6032#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 700 fasta sequence
[CGCTTGATGACGCGAATTCCCCCTGTCGATGAAGGGTTCACCTGATATAGTTTATTGTCCCCTGGGGCAGGTGGTGTGGAACTTTTCGCCCCAAAAGTCCTAACTAGACCCTTAGCACCACGTTCACGCGTGTGGACGCTTAGAACAACGTTAATATTTGCACTACTTTGCTGCTTACCGTTTGACGGCGGTCGTAGAGAGCCTTTTTTTTGGTTGTGAAGTAATATTTATCCCAAAACCTTACTCGGGTCCATTTGGGATAAAATGGGCAAAACGGCACGGACACGGAGTGTGTGTGAAGTTGAAGTGATTTCAAACAAACAAAAAAAAAAACGGCCACAGACTTGCACGTTCCTTTCCTTCCTTCTATTTAGTCTAGAAGAATCCGTTCGACGCGTCGTCGGTTGCAAAAAATCGAACGTACCAAGTATGGGTGTGTGTAAATGTGGAAGTATGAGTGTGTGCGGGAATTAACCGGGATAGAAATAAAGATAAACTAATGCACTTTCACCAAAAACTAACGAGGGAGGTAAGGAAAATAGGGACCACTCGCTTTTGTCGCTATTTTCCCGTTTTGTTTCTTTGCGCTTTTGCACTTTTGCTTGCTGCTGCTGCTGCTGCTGCTAAGAAAAATCGATCTCAGCCGCGAGAGAGAGGACGCTGTGCGGGAGGGGTGAGTCTTTTCTCGGACGCGTGGGTC]
[-] EMBL BM632332 [CGCTTGATGACGCGAATTCCCCCTGTCGATGAAGGGTTCACCTGATATAGTTTATTGTCCCCTGGGGCAGGTGGTGTGGAACTTTTCGCCCCAAAAGTCCTAACTAGACCCTTAGCACCACGTTCACGCGTGTGGACGCTTAGAACAACGTTAATATTTGCACTACTTTGCTGCTTACCGTTTGACGGCGGTCGTAGAGAGCCTTTTTTTTGGTTGTGAAGTAATATTTATCCCAAAACCTTACTCGGGTCCATTTGGGATAAAATGGGCAAAACGGCACGGACACGGAGTGTGTGTGAAGTTGAAGTGATTTCAAACAAACAAAAAAAAAAACGGCCACAGACTTGCACGTTCCTTTCCTTCCTTCTATTTAGTCTAGAAGAATCCGTTCGACGCGTCGTCGGTTGCAAAAAATCGAACGTACCAAGTATGGGTGTGTGTAAATGTGGAAGTATGAGTGTGTGCGGGAATTAACCGGGATAGAAATAAAGATAAACTAATGCACTTTCACCAAAAACTAACGAGGGAGGTAAGGAAAATAGGGACCACTCGCTTTTGTCGCTATTTTCCCGTTTTGTTTCTTTGCGCTTTTGCACTTTTGCTTGCTGCTGCTGCTGCTGCTGCTAAGAAAAATCGATCTCAGCCGCGAGAGAGAGGACGCTGTGCGGGAGGGGTGAGTCTTTTCTCGGACGCGTGGGTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6032#0 AGATCGCAGCAGGNCTNACAGTATCCAGCGACGCTTCGACACGAACATGCTGCTTTCGCT 60
consensus_6032#1 ------------------------------------------------------------
consensus_6032#0 GAGCACATAAGCATCGATCTGGTCGTTTCTGGTGAAGCTGATGATTTCGCAACGTACGGT 120
consensus_6032#1 ------------------------------------------------------------
consensus_6032#0 TTTCAGCAGTGCATCCCACATCGGTCTGGGGATCTTTCGCAGATCGGCATTCTTGCACGC 180
consensus_6032#1 ------------------------------------------------------------
consensus_6032#0 TGTCGACGGTTCGAACCAGATTTCCAGCAGCTTTTCCACACCTTCGAAAAAGTGCATATC 240
consensus_6032#1 -------------CGCTTGATGAC--GCGAATTCCCCCTGTCGATGAAGG-GTTCACCTG 44
* *** * ** ** ** * *** ** ** *
consensus_6032#0 CTCCCTGCTACTA-CTATTACTACTGCTATTACTTAAGTCCTCCGACTCCGCCATTCTGT 299
consensus_6032#1 ATATAGTTTATTGTCCCCTGGGGCAGGTGGTG-TGGAACTTTTCGCCCCAAAAGTCCTAA 103
* ** * * * * * * * * * * ** * * * **
consensus_6032#0 CTGGTGTACAACTTGCTTTGTTTTAGCGCGCTTCCGCTTGCTCTCACTCTCCTTTCTCGC 359
consensus_6032#1 CTAG-ACCCTTAGCACCACGTTCACGCGTGTGGACGCTTAGAACAACGTTAATATTT-GC 161
** * * * *** *** * ***** ** * * * * **
consensus_6032#0 TTGATGACGCGAATTCACCGTTTGACGGCGGTCGTAGAGAGCCTTTTTTTTGGTTGTGAA 419
consensus_6032#1 ACTACTTTGCTG-CTTACCGTTTGACGGCGGTCGTAGAGAGCCTTTTTTTTGGTTGTGAA 220
* ** * ********************************************
consensus_6032#0 GTAATATTTATCCCAAAACCTTACTCGGGTCCATTTGGGATAAAATGGGCAAAACGGCAC 479
consensus_6032#1 GTAATATTTATCCCAAAACCTTACTCGGGTCCATTTGGGATAAAATGGGCAAAACGGCAC 280
************************************************************
consensus_6032#0 GGACACGGAGTGTGTGTTGAAGTTGAAGTGATTTCAAACAAACAAAAAAAAAA-CGGCCA 538
consensus_6032#1 GGACACGGAGTGTGTGT-GAAGTTGAAGTGATTTCAAACAAACAAAAAAAAAAACGGCCA 339
***************** *********************************** ******
consensus_6032#0 CAGACTTGCACGTTCCTTTCCTTCCTTCTATTTAGTCTAGAAGAATCCGTTCGACGCGTC 598
consensus_6032#1 CAGACTTGCACGTTCCTTTCCTTCCTTCTATTTAGTCTAGAAGAATCCGTTCGACGCGTC 399
************************************************************
consensus_6032#0 GTCGGTTGCAAAAAATCGAACGTACCAAGTAAGGGTGTGTGTAAATGTGGAAGTATGAGT 658
consensus_6032#1 GTCGGTTGCAAAAAATCGAACGTACCAAGTATGGGTGTGTGTAAATGTGGAAGTATGAGT 459
******************************* ****************************
consensus_6032#0 GTGTGCGGGAATTAACCGGGATATAAAAAAAGTTTAACTAATGCACTTTCACCAAAAACT 718
consensus_6032#1 GTGTGCGGGAATTAACCGGGATAGAAATAAAGATAAACTAATGCACTTTCACCAAAAACT 519
*********************** *** **** * *************************
consensus_6032#0 AACGAGGGAGGTAAGGAAAATAGGGACCACTCGCTTTTGTCGCTATTTTCCCGTTTTGTT 778
consensus_6032#1 AACGAGGGAGGTAAGGAAAATAGGGACCACTCGCTTTTGTCGCTATTTTCCCGTTTTGTT 579
************************************************************
consensus_6032#0 TCTTTGCGCTTTTGCACTTTTGCTTGCTGCTGCTGCTGCTGCTGCTAAGAAAAATCGATC 838
consensus_6032#1 TCTTTGCGCTTTTGCACTTTTGCTTGCTGCTGCTGCTGCTGCTGCTAAGAAAAATCGATC 639
************************************************************
consensus_6032#0 TCAGCCGCGAGAGAGAGGACGCTGTGCGGGAGGGGTGAGTCTTTTCT---ACGCGGGCGT 895
consensus_6032#1 TCAGCCGCGAGAGAGAGGACGCTGTGCGGGAGGGGTGAGTCTTTTCTCGGACGCGTGGGT 699
*********************************************** ***** * **
consensus_6032#0 CCGCGG 901
consensus_6032#1 C----- 700
*
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||