cluster # 604

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Anopheles gambiae
cluster # 604 cluster # 604 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_604#0 length = 581 sequences # 1

consensus_604#1 length = 462 sequences # 1

consensusID : consensus_604#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 581
fasta sequence

                              [GAAACAGAAACAGAAACAGACAAACCCAGCAAATTGGGCAAAATGGAGGAGAAAAAAGGAATAAAACAAGACAAATAGAAGAGCATAGCTAAACATGCTAACGAAGGATTGGAGATAACGAGTTGTACGATGTGTGGTAAACAGCAAAGCGGGTAAGGAGCAAACACATTACAAACACACTAAAGACAGCACGAAGAGCACACAACTTAATTTAGACAGTGAGTTAATAGAGTAGGTAAAACCGATTCGAAACCACAATCATAACCAAAACTAAGGACAACTAAGAACAGAACACAAAAAGAAGAAAAAAAAACCCCAAAGCAAAATAAAAAAATAAAATAACTTTACTCGCCAAAGGCAACAACCAGCATATGCAGAAGGTGGGCGGCTCTTACACGTACTCGCCCACACTGATTGAAATAACTCGTCATTATCATCACTCTCATCGTATCATATATTGGAGGAGCACGGGCGAAGGGGAATACGGTTGTGTGACAGAAAACAAGACCAGCGCACTTCACATTTGAAGAAAACCCTGAAACCCCGAAGCCCCGAACAGAATCTATCACAGTGAAAGGAAA]

[+] EMBL BX614354             [GAAACAGAAACAGAAACAGACAAACCCAGCAAATTGGGCAAAATGGAGGAGAAAAAAGGAATAAAACAAGACAAATAGAAGAGCATAGCTAAACATGCTAACGAAGGATTGGAGATAACGAGTTGTACGATGTGTGGTAAACAGCAAAGCGGGTAAGGAGCAAACACATTACAAACACACTAAAGACAGCACGAAGAGCACACAACTTAATTTAGACAGTGAGTTAATAGAGTAGGTAAAACCGATTCGAAACCACAATCATAACCAAAACTAAGGACAACTAAGAACAGAACACAAAAAGAAGAAAAAAAAACCCCAAAGCAAAATAAAAAAATAAAATAACTTTACTCGCCAAAGGCAACAACCAGCATATGCAGAAGGTGGGCGGCTCTTACACGTACTCGCCCACACTGATTGAAATAACTCGTCATTATCATCACTCTCATCGTATCATATATTGGAGGAGCACGGGCGAAGGGGAATACGGTTGTGTGACAGAAAACAAGACCAGCGCACTTCACATTTGAAGAAAACCCTGAAACCCCGAAGCCCCGAACAGAATCTATCACAGTGAAAGGAAA]




>consensus_604#0
GAAACAGAAACAGAAACAGACAAACCCAGCAAATTGGGCAAAATGGAGGAGAAAAAAGGA
ATAAAACAAGACAAATAGAAGAGCATAGCTAAACATGCTAACGAAGGATTGGAGATAACG
AGTTGTACGATGTGTGGTAAACAGCAAAGCGGGTAAGGAGCAAACACATTACAAACACAC
TAAAGACAGCACGAAGAGCACACAACTTAATTTAGACAGTGAGTTAATAGAGTAGGTAAA
ACCGATTCGAAACCACAATCATAACCAAAACTAAGGACAACTAAGAACAGAACACAAAAA
GAAGAAAAAAAAACCCCAAAGCAAAATAAAAAAATAAAATAACTTTACTCGCCAAAGGCA
ACAACCAGCATATGCAGAAGGTGGGCGGCTCTTACACGTACTCGCCCACACTGATTGAAA
TAACTCGTCATTATCATCACTCTCATCGTATCATATATTGGAGGAGCACGGGCGAAGGGG
AATACGGTTGTGTGACAGAAAACAAGACCAGCGCACTTCACATTTGAAGAAAACCCTGAA
ACCCCGAAGCCCCGAACAGAATCTATCACAGTGAAAGGAAA

consensusID : consensus_604#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 462
fasta sequence

                              [AGGAAAAGAAGTTGATGAGAAAGATGCTCCATAGGAAATTGAAAAAAAGGACTAGATTAAATGGAAGAACAAAATAGAAGAAAAAAACCCAAAGCAAAATAAAAAAATAAAATAACTTTACTCGCCAAAGGCAACAACCAGCATATGCAGAAGGTGGGCGGCTCTTACACGTACTCGCCCACACTGATTGAAATAACTCGTCATTATCATCACTCTCATCGTATCATATATTGGAGGAGCACGGGCGAAGGGGAATACGGTTGTGTGACAGAAAACAAGACCAGCGCACTTCACATTTGAAGAAAACCCTGAAACCCCGAAGCCCCGAACAGAATCTATCACAGTGAAAGGAAAACCAGGTTACAAAAAAAAACATATAAATAATATTGGAGAAGCGTTCGAAGCAAATATAAACTAAACATAGCGATTAATAGTTAAACAAAATAAATCGAAAACATACAC]

[+] EMBL BX622572             [AGGAAAAGAAGTTGATGAGAAAGATGCTCCATAGGAAATTGAAAAAAAGGACTAGATTAAATGGAAGAACAAAATAGAAGAAAAAAACCCAAAGCAAAATAAAAAAATAAAATAACTTTACTCGCCAAAGGCAACAACCAGCATATGCAGAAGGTGGGCGGCTCTTACACGTACTCGCCCACACTGATTGAAATAACTCGTCATTATCATCACTCTCATCGTATCATATATTGGAGGAGCACGGGCGAAGGGGAATACGGTTGTGTGACAGAAAACAAGACCAGCGCACTTCACATTTGAAGAAAACCCTGAAACCCCGAAGCCCCGAACAGAATCTATCACAGTGAAAGGAAAACCAGGTTACAAAAAAAAACATATAAATAATATTGGAGAAGCGTTCGAAGCAAATATAAACTAAACATAGCGATTAATAGTTAAACAAAATAAATCGAAAACATACAC]




>consensus_604#1
AGGAAAAGAAGTTGATGAGAAAGATGCTCCATAGGAAATTGAAAAAAAGGACTAGATTAA
ATGGAAGAACAAAATAGAAGAAAAAAACCCAAAGCAAAATAAAAAAATAAAATAACTTTA
CTCGCCAAAGGCAACAACCAGCATATGCAGAAGGTGGGCGGCTCTTACACGTACTCGCCC
ACACTGATTGAAATAACTCGTCATTATCATCACTCTCATCGTATCATATATTGGAGGAGC
ACGGGCGAAGGGGAATACGGTTGTGTGACAGAAAACAAGACCAGCGCACTTCACATTTGA
AGAAAACCCTGAAACCCCGAAGCCCCGAACAGAATCTATCACAGTGAAAGGAAAACCAGG
TTACAAAAAAAAACATATAAATAATATTGGAGAAGCGTTCGAAGCAAATATAAACTAAAC
ATAGCGATTAATAGTTAAACAAAATAAATCGAAAACATACAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_604#0      GAAACAGAAACAGAAACAGACAAACCCAGCAAATTGGGCAAAATGGAGGAGAAAAAAGGA 60
consensus_604#1      ------------------------------------------------------------
                                                                                 

consensus_604#0      ATAAAACAAGACAAATAGAAGAGCATAGCTAAACATGCTAACGAAGGATTGGAGATAACG 120
consensus_604#1      ------------------------------------------------------------
                                                                                 

consensus_604#0      AGTTGTACGATGTGTGGTAAACAGCAAAGCGGGTAAGGAGCAAACACATTACAAACACAC 180
consensus_604#1      ------------------------------------------------------------
                                                                                 

consensus_604#0      TAAAGACAGCACGAAGAGCACACAACTTAATTTAGACAGTGAGTTAATAGAGTAGGTAAA 240
consensus_604#1      -----------------------------------------AGGAAAAGAAGTTGATGAG 19
                                                              **  **   *** * * * 

consensus_604#0      ACCGATTCGAAACCACAATCATAACCAAAACTAAGGACAACTAAGAACAGAACACAAAAA 300
consensus_604#1      AAAGATGCT---CCATAG--GAAATTGAAAAAAAGGACTAGATTAAATGGAAGA-ACAAA 73
                     *  *** *    *** *     **   ***  ****** *     **  *** * * ***

consensus_604#0      GAAGAAAAAAAAACCCCAAAGCAAAATAAAAAAATAAAATAACTTTACTCGCCAAAGGCA 360
consensus_604#1      ATAGAAGAAAAAAACCCAAAGCAAAATAAAAAAATAAAATAACTTTACTCGCCAAAGGCA 133
                       **** ****** **********************************************

consensus_604#0      ACAACCAGCATATGCAGAAGGTGGGCGGCTCTTACACGTACTCGCCCACACTGATTGAAA 420
consensus_604#1      ACAACCAGCATATGCAGAAGGTGGGCGGCTCTTACACGTACTCGCCCACACTGATTGAAA 193
                     ************************************************************

consensus_604#0      TAACTCGTCATTATCATCACTCTCATCGTATCATATATTGGAGGAGCACGGGCGAAGGGG 480
consensus_604#1      TAACTCGTCATTATCATCACTCTCATCGTATCATATATTGGAGGAGCACGGGCGAAGGGG 253
                     ************************************************************

consensus_604#0      AATACGGTTGTGTGACAGAAAACAAGACCAGCGCACTTCACATTTGAAGAAAACCCTGAA 540
consensus_604#1      AATACGGTTGTGTGACAGAAAACAAGACCAGCGCACTTCACATTTGAAGAAAACCCTGAA 313
                     ************************************************************

consensus_604#0      ACCCCGAAGCCCCGAACAGAATCTATCACAGTGAAAGGAAA------------------- 581
consensus_604#1      ACCCCGAAGCCCCGAACAGAATCTATCACAGTGAAAGGAAAACCAGGTTACAAAAAAAAA 373
                     *****************************************                   

consensus_604#0      ------------------------------------------------------------
consensus_604#1      CATATAAATAATATTGGAGAAGCGTTCGAAGCAAATATAAACTAAACATAGCGATTAATA 433
                                                                                 

consensus_604#0      -----------------------------
consensus_604#1      GTTAAACAAAATAAATCGAAAACATACAC 462