cluster # 6042

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Anopheles gambiae
cluster # 6042 cluster # 6042 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6042#0 length = 654 sequences # 2

consensus_6042#1 length = 618 sequences # 1
consensus_6042#2 length = 596 sequences # 2

consensusID : consensus_6042#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 654
fasta sequence

                              [CCGCCCACGCGTCCG-GCGGACGTGTGTTACCCTCCTAGAGTGCTGTGCATCCCCAAATCACAACAGTTCCTACATTTTGTATTTCGCTGCAGCAAGCGACCGTACTACGCATCGCGTACGCATACACGGCAAGTCTTACGACAGCGGCATTAAAGCTTCCTTCACCCGGAACCTCGTGGGCGTTACGCACCGACGAAGAAGATTCGAATTGTGCAAAACACAACCGAGCAAAGGACAGCGAACCGCCGCTATATACACAGAACAATAGAGCGCGCGCGCGCGCATCAGTGTGTGTGGGTGTGTGC-GTATGGTGTGTGTGCTTGTCGCTGTTGCTGCATACGGAGCGAAGGCGAGAACGCCGTAAAACCGACGCAGCAATAAAAGGAAGAAGCAAAAACCGGGTGCAATAAAACATACACACACATACGACCGGCCACACATCCCTCAGAGAAAGGCAGCGAGCAGCGCAAAGCAATAATAATGGTCGCCAGCGAGCCCGAGGACGACGTCCAAAAGAATTCTCCACCTCCCATGGAGAACAACGATGACAACGCACCCTCGAAACGCTTCTACCGGCAGCAGGTGTGGACCACGATGAAAGCCCTCTTCCCGCAGGGTTCGGCCTCGAGCAACTACGTCAACAGAAAGATACCA]

[+] EMBL BM575588             [CCGCCCACGCGTCCG GCGGACGTGTGTTACCCTCCTAGAGTGCTGTGCATCCCCAAATCACAACAGTTCCTACATTTTGTATTTCGCTGCAGCAAGCGACCGTACTACGCATCGCGTACGCATACACGGCAAGTCTTACGACAGCGGCATTAAAGCTTCCTTCACCCGGAACCTCGTGGGCGTTACGCACCGACGAAGAAGATTCGAATTGTGCAAAACACAACCGAGCAAAGGACAGCGAACCGCCGCTATATACACAGAACAATAGAGCGCGCGCGCGCGCATCAGTGTGTGTGGGTGTGTGC GTA                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BM581147             [            CCGAGCGGACGTGTGTTACCCTCCTAGAGTGCTGTGCATCCCCAAATCACAACAGTTCCTACATTTTGTATTTCGCTGCAGCAAGCGACCGTACTACGCATCGCGTACGCATACACGGCAAGTCTTACGACAGCGGCATTAAAGCTTCCTTCACCCGGAACCTCGTGGGCGTTACGCACCGACGAAGAAGATTCGAATTGTGCAAAACACAACCGAGCAAAGGACAGCGAACCGCCGCTATATACACAGAACAATAGAGCGCGCGCGCGCGCATCAGTGTGTGTGGGTGTGTGCTGT TGGTGTGTGTGCTTGTCGCTGTTGCTGCATACGGAGCGAAGGCGAGAACGCCGTAAAACCGACGCAGCAATAAAAGGAAGAAGCAAAAACCGGGTGCAATAAAACATACACACACATACGACCGGCCACACATCCCTCAGAGAAAGGCAGCGAGCAGCGCAAAGCAATAATAATGGTCGCCAGCGAGCCCGAGGACGACGTCCAAAAGAATTCTCCACCTCCCATGGAGAACAACGATGACAACGCACCCTCGAAACGCTTCTACCGGCAGCAGGTGTGGACCACGATGAAAGCCCTCTTCCCGCAGGGTTCGGCCTCGAGCAACTACGTCAACAGAAAGATACCA]




>consensus_6042#0
CCGCCCACGCGTCCGGCGGACGTGTGTTACCCTCCTAGAGTGCTGTGCATCCCCAAATCA
CAACAGTTCCTACATTTTGTATTTCGCTGCAGCAAGCGACCGTACTACGCATCGCGTACG
CATACACGGCAAGTCTTACGACAGCGGCATTAAAGCTTCCTTCACCCGGAACCTCGTGGG
CGTTACGCACCGACGAAGAAGATTCGAATTGTGCAAAACACAACCGAGCAAAGGACAGCG
AACCGCCGCTATATACACAGAACAATAGAGCGCGCGCGCGCGCATCAGTGTGTGTGGGTG
TGTGCGTATGGTGTGTGTGCTTGTCGCTGTTGCTGCATACGGAGCGAAGGCGAGAACGCC
GTAAAACCGACGCAGCAATAAAAGGAAGAAGCAAAAACCGGGTGCAATAAAACATACACA
CACATACGACCGGCCACACATCCCTCAGAGAAAGGCAGCGAGCAGCGCAAAGCAATAATA
ATGGTCGCCAGCGAGCCCGAGGACGACGTCCAAAAGAATTCTCCACCTCCCATGGAGAAC
AACGATGACAACGCACCCTCGAAACGCTTCTACCGGCAGCAGGTGTGGACCACGATGAAA
GCCCTCTTCCCGCAGGGTTCGGCCTCGAGCAACTACGTCAACAGAAAGATACCA

consensusID : consensus_6042#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 618
fasta sequence

                              [CCGGCGGAGCGCACACATCACTACATACCAAACGTTGAGTGAAGCGGACGTGTGTTACCCTCCCAGAGTGCTGTGCATCCCAAAATCACAACAGTTCCTACATTTTGTATTTCGCTGCAGCAAGCGACCGTACTACGCATCGCGTACGCATACACGGCAAGTCTTACGACAGCGGCATTAAAGCTTCCTTCACCCGGAACCTCGTGGGCGTTACGCACCGACGAAGAAGATTCGAATTGTGCAAAACACAACCGAGCAAAGGACAGCGAACCGCCGCATTAGCTATATACACAGAACAATAGAGCGCGCGCGCGCGCATCAGTGTGTGTGGGTGTGTGCGTACGTGTGTTTGAAAGTGGTCGAGAAAAGACACAACTGTAGCTTATTTTTTTTATTTTGGTTTGTTGTTTTATTGTTGACCGTGTGGTGACCATCAAAACCAGTGTTGGTGTGTGTGCTTGGCGCTGTTGCTGCATACGGAGCGAAGGCGAGAACGCCGTAAAACCGACGCAGCAATAAAAGGAAGAAGCAAAAACCGGGTGCAATAAAACATACACACACATACGACCGGCCACACATCCCTCAGAGAAAGGCAGCGAGCAGCGCAAAGCAATAATA]

[+] EMBL BM633027             [CCGGCGGAGCGCACACATCACTACATACCAAACGTTGAGTGAAGCGGACGTGTGTTACCCTCCCAGAGTGCTGTGCATCCCAAAATCACAACAGTTCCTACATTTTGTATTTCGCTGCAGCAAGCGACCGTACTACGCATCGCGTACGCATACACGGCAAGTCTTACGACAGCGGCATTAAAGCTTCCTTCACCCGGAACCTCGTGGGCGTTACGCACCGACGAAGAAGATTCGAATTGTGCAAAACACAACCGAGCAAAGGACAGCGAACCGCCGCATTAGCTATATACACAGAACAATAGAGCGCGCGCGCGCGCATCAGTGTGTGTGGGTGTGTGCGTACGTGTGTTTGAAAGTGGTCGAGAAAAGACACAACTGTAGCTTATTTTTTTTATTTTGGTTTGTTGTTTTATTGTTGACCGTGTGGTGACCATCAAAACCAGTGTTGGTGTGTGTGCTTGGCGCTGTTGCTGCATACGGAGCGAAGGCGAGAACGCCGTAAAACCGACGCAGCAATAAAAGGAAGAAGCAAAAACCGGGTGCAATAAAACATACACACACATACGACCGGCCACACATCCCTCAGAGAAAGGCAGCGAGCAGCGCAAAGCAATAATA]




>consensus_6042#1
CCGGCGGAGCGCACACATCACTACATACCAAACGTTGAGTGAAGCGGACGTGTGTTACCC
TCCCAGAGTGCTGTGCATCCCAAAATCACAACAGTTCCTACATTTTGTATTTCGCTGCAG
CAAGCGACCGTACTACGCATCGCGTACGCATACACGGCAAGTCTTACGACAGCGGCATTA
AAGCTTCCTTCACCCGGAACCTCGTGGGCGTTACGCACCGACGAAGAAGATTCGAATTGT
GCAAAACACAACCGAGCAAAGGACAGCGAACCGCCGCATTAGCTATATACACAGAACAAT
AGAGCGCGCGCGCGCGCATCAGTGTGTGTGGGTGTGTGCGTACGTGTGTTTGAAAGTGGT
CGAGAAAAGACACAACTGTAGCTTATTTTTTTTATTTTGGTTTGTTGTTTTATTGTTGAC
CGTGTGGTGACCATCAAAACCAGTGTTGGTGTGTGTGCTTGGCGCTGTTGCTGCATACGG
AGCGAAGGCGAGAACGCCGTAAAACCGACGCAGCAATAAAAGGAAGAAGCAAAAACCGGG
TGCAATAAAACATACACACACATACGACCGGCCACACATCCCTCAGAGAAAGGCAGCGAG
CAGCGCAAAGCAATAATA

consensusID : consensus_6042#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 596
fasta sequence

                              [CCGCGGACGCGTGGGAAACGTTGAGTGAAGCGGACGTGTGTTACCCTCCTAGAGTGCTGTGCATCCCCAAATCACAACAGTTCCTACATTTTGTATTTCGCTGCAGCAAGCGACCGTACTACGCATCGCGTACGCATACACGGCAAGTCTTACGACAGCGGCATTAAAGCTTCCTTCACCCGGAACCTCGTGGGCGTTACGCACCGACGAAGAAGATTCGAATTGTGCAAAACACAACCGAGCAAAGGACAGCGAACCGCCGCTATATACACAGAACAATAGAGCGCGCGCGCGCGCATCAGTGTGTGTGGGTGTGTGCGTACGTGTGCTTGAAAGTGGTCGAGAAAAGACACAACTGTAGCTTATTTTTTTATTTTGGTTTGTTGTTTTATTGTTGACCGTGTGGTGACCATCAAAACCAGTGTTGGTGTGTGTGCTTGTCGCTGTTGCTGCATACGGAGCGAAGGCGAGAACGCCGTAAAACCGACGCAGCAATAAAAGGAAGAAGCAAAAACCGGGTGCAATAAAACATACACACACATACATACACATACACTCACACTGTCATATTTATGCGGAATGAATTGTAATGAATT]

[+] EMBL BM617561             [CCGCGGACGCGTGGGAAACGTTGAGTGAAGCGGACGTGTGTTACCCTCCTAGAGTGCTGTGCATCCCCAAATCACAACAGTTCCTACATTTTGTATTTCGCTGCAGCAAGCGACCGTACTACGCATCGCGTACGCATACACGGCAAGTCTTACGACAGCGGCATTAAAGCTTCCTTCACCCGGAACCTCGTGGGCGTTACGCACCGACGAAGAAGATTCGAATTGTGCAAAACACAACCGAGCAAAGGACAGCGAACCGCCGCTATATACACAGAACAATAGAGCGCGCGCGCGCGCATCAGTGTGTGTGGGTGTGTGCGTACGTGTGCTTGAAAGTGGTCGAGAAAAGACACAACTGTAGCTTATTTTTTTATTTTGGTTTGTTGTTTTATTGTTGACCGTGTGGTGACCATCAAAACCAGTGTTGGTGTGTGTGCTTGTCGCTGTTGCTGCATACGGAGCGAAGGCGAGAACGCCGTAAAACCGACGCAGCAATAAAAGGAAGAAGCAAAAACCGGGTGCAATAAAACATACACACACATACATACACATACACTCACACTGTCATATTTATGCGGAATGAATTGTAATGAATT]
[+] EMBL BM585748             [                ccgGTTGAGTGAAGCGGACGTGTGTTACCCTCCTAGAGTGCTGTGCATCCCCAAATCACAACAGTTCCTACATTTTGTATTTCGCTGCAGCAAGCGACCGTACTACGCATCGCGTACGCATACACGGCAAGTCTTACGACAGCGGCATTAAAGCTTCCTTCACCCGGAACCTCGTGGGCGTTACGCACCGACGAAGAAGATTCGAATTGTGCAAAACACAACCGAGCAAAGGACAGCGAACCGCCGCTATATACACAGAACAATAGAGCGCGCGCGCGCGCATCAGTGTGTGTGGGTGTGTGCGTACGTGTGCTTGAAAGTGGTCGAGAAAAGACACAACTGTAGCTTATTTTTTTATTTTGGTTTGTTGTTTTATTGTTGACCGTGTGGTGACCATCAAAACCAGTGTTGGTGTGTGTGCTTGTCGCTGTTGCTGCATACGGAGCGAAGGCGAGAACGCCGTAAAACCGACGCAGCAATAAAAGGAAGAAGC                                                                                       ]




>consensus_6042#2
CCGCGGACGCGTGGGAAACGTTGAGTGAAGCGGACGTGTGTTACCCTCCTAGAGTGCTGT
GCATCCCCAAATCACAACAGTTCCTACATTTTGTATTTCGCTGCAGCAAGCGACCGTACT
ACGCATCGCGTACGCATACACGGCAAGTCTTACGACAGCGGCATTAAAGCTTCCTTCACC
CGGAACCTCGTGGGCGTTACGCACCGACGAAGAAGATTCGAATTGTGCAAAACACAACCG
AGCAAAGGACAGCGAACCGCCGCTATATACACAGAACAATAGAGCGCGCGCGCGCGCATC
AGTGTGTGTGGGTGTGTGCGTACGTGTGCTTGAAAGTGGTCGAGAAAAGACACAACTGTA
GCTTATTTTTTTATTTTGGTTTGTTGTTTTATTGTTGACCGTGTGGTGACCATCAAAACC
AGTGTTGGTGTGTGTGCTTGTCGCTGTTGCTGCATACGGAGCGAAGGCGAGAACGCCGTA
AAACCGACGCAGCAATAAAAGGAAGAAGCAAAAACCGGGTGCAATAAAACATACACACAC
ATACATACACATACACTCACACTGTCATATTTATGCGGAATGAATTGTAATGAATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6042#1      CCGGCGGAGCGCACACATCACTACATACCAAACGTTGAGTGAAGCGGACGTGTGTTACCC 60
consensus_6042#2      --------------CCGCGGACGCGTGGGAAACGTTGAGTGAAGCGGACGTGTGTTACCC 46
consensus_6042#0      ----------------------------CCGCCCACGCGTCCGGCGGACGTGTGTTACCC 32
                                                      *   * **   *****************

consensus_6042#1      TCCCAGAGTGCTGTGCATCCCAAAATCACAACAGTTCCTACATTTTGTATTTCGCTGCAG 120
consensus_6042#2      TCCTAGAGTGCTGTGCATCCCCAAATCACAACAGTTCCTACATTTTGTATTTCGCTGCAG 106
consensus_6042#0      TCCTAGAGTGCTGTGCATCCCCAAATCACAACAGTTCCTACATTTTGTATTTCGCTGCAG 92
                      *** ***************** **************************************

consensus_6042#1      CAAGCGACCGTACTACGCATCGCGTACGCATACACGGCAAGTCTTACGACAGCGGCATTA 180
consensus_6042#2      CAAGCGACCGTACTACGCATCGCGTACGCATACACGGCAAGTCTTACGACAGCGGCATTA 166
consensus_6042#0      CAAGCGACCGTACTACGCATCGCGTACGCATACACGGCAAGTCTTACGACAGCGGCATTA 152
                      ************************************************************

consensus_6042#1      AAGCTTCCTTCACCCGGAACCTCGTGGGCGTTACGCACCGACGAAGAAGATTCGAATTGT 240
consensus_6042#2      AAGCTTCCTTCACCCGGAACCTCGTGGGCGTTACGCACCGACGAAGAAGATTCGAATTGT 226
consensus_6042#0      AAGCTTCCTTCACCCGGAACCTCGTGGGCGTTACGCACCGACGAAGAAGATTCGAATTGT 212
                      ************************************************************

consensus_6042#1      GCAAAACACAACCGAGCAAAGGACAGCGAACCGCCGCATTAGCTATATACACAGAACAAT 300
consensus_6042#2      GCAAAACACAACCGAGCAAAGGACAGCGAACCGCCGC------TATATACACAGAACAAT 280
consensus_6042#0      GCAAAACACAACCGAGCAAAGGACAGCGAACCGCCGC------TATATACACAGAACAAT 266
                      *************************************      *****************

consensus_6042#1      AGAGCGCGCGCGCGCGCATCAGTGTGTGTGGGTGTGTGCGTACG-TGTGTTTGAAAGTGG 359
consensus_6042#2      AGAGCGCGCGCGCGCGCATCAGTGTGTGTGGGTGTGTGCGTACG-TGTGCTTGAAAGTGG 339
consensus_6042#0      AGAGCGCGCGCGCGCGCATCAGTGTGTGTGGGTGTGTGCGTATGGTGTGTGTGCTTGTCG 326
                      ****************************************** * ****  **   ** *

consensus_6042#1      TCGAGAAAAGACACA-ACTGTAGCTTATTTTTTTTATTTTGGTTTGTTGTTTTATTGTTG 418
consensus_6042#2      TCGAGAAAAGACACA-ACTGTAGCTTATTTTTTT-ATTTTGGTTTGTTGTTTTATTGTTG 397
consensus_6042#0      CTGTTGCTGCATACGGAGCGAAGGCGAGAACGCC---GTAAAACCGACGCAGCAATAA-A 382
                        *       * **  *  * **   *           *      *  *    * *    

consensus_6042#1      ACCGTGTGGTGACCATCAAAACCAGTGTTG-GTGTGTGTGCTTGGCGCTGTTGCTGCATA 477
consensus_6042#2      ACCGTGTGGTGACCATCAAAACCAGTGTTG-GTGTGTGTGCTTGTCGCTGTTGCTGCATA 456
consensus_6042#0      AGGAAGAAGCAAAAACCGGGTGCAATAAAACATACACACACATACGACCGGCCACACATC 442
                      *    *  *  *  * *     ** *      *       * *    * *      *** 

consensus_6042#1      C---GGAGCGAAGGCGAGAACGCCGTAAAACCGACGCAGCAATAAAAGGAAGAAGCAAAA 534
consensus_6042#2      C---GGAGCGAAGGCGAGAACGCCGTAAAACCGACGCAGCAATAAAAGGAAGAAGCAAAA 513
consensus_6042#0      CCTCAGAGAAAGGCAGCGAGCAGCGCAAAGCAATAATAATGGTCGCCAGCGAGCCCGAGG 502
                      *    ***  * *  * ** *  ** *** *      *    *     *      * *  

consensus_6042#1      ACCGGGTGCAATAAAACA-TACAC------------ACACATACGACCGGCCACACAT-- 579
consensus_6042#2      ACCGGGTGCAATAAAACA-TACAC------------ACACATACATACACATACACTCA- 559
consensus_6042#0      ACGACGTCCAAAAGAATTCTCCACCTCCCATGGAGAACAACGATGACAACGCACCCTCGA 562
                      **   ** *** * **   * ***            ***   *         ** *    

consensus_6042#1      ----CCCTCAGAGAAAGGCAGCGAGCAGCGCAAAGCAATAATA----------------- 618
consensus_6042#2      --CACTGTCATATTTATGCGGAATGAATTGTAATGAATT--------------------- 596
consensus_6042#0      AACGCTTCTACCGGCAGCAGGTGTGGACCACGATGAAAGCCCTCTTCCCGCAGGGTTCGG 622
                          *    *     *    *   * *     * * *                       

consensus_6042#1      --------------------------------
consensus_6042#2      --------------------------------
consensus_6042#0      CCTCGAGCAACTACGTCAACAGAAAGATACCA 654