These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6045#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1229 fasta sequence [GATTGCCCCAGGTTTTACTGCGATCGTATGGAAAAGCGCCTGAGTATCTTCCACCCACCGGTCAGACACCGTCGCCGACCACACCATCACAGCCACCCGTGGCCACTACGACGCCGACACCACCGACTAGCGCCACGCCCGATTCCTACCCAAGCTATGACGATGAGTACGACGACTCGATCGTGATCGATGCGCGAAGCGGTGCCGGAACTAACTACTCCGACTACTCTTCCACGGATTCTGATGACGGAGATGTTACGGTTACCGCGGCCACAACTTCAGCCACTACCCGCTCGTTTACCATCACGAAAAGTACCGCGGCACGGAGGAACAAACTCAGACAATACTGGGTGGATCGTCTTCGATTGAGGTGAGCTATGCCACACGCACCAACCGGCAAGCGACATCGTTGCGTTTGGATCCATCGACCGCTTCGGGTGCGTTCGACTTCGGGCCATCTTTCCGTGGATCCTTCCCAACGACTACTTTCCCACCGAGCACTACCAACGTACCGTCGACGGTCGGTTCCAGCTCCAGCTCAACGTCCAGCGGCAGTACGCCACAGCGCTCCGTGACGATCATCTCTTCTACCACGCCACGCACTGTTGTGTCGGCACGATTCAGCGAAACGGGTGACTCCACTTCTCAGAGCACATCTTCGGCACGGACGACGTATGAATCGCAAAGTGTGACATCGGGCATTACCTCGCAATCGGTCGTTGTTGGACAGGGACTGACGCAGGAACAGATCCATGCCAACCAGGAACAGTTCATCAAGCTGCTGTCCGAGCGGGATTCGATTGCGGAGGTTGGCTTTGGACCGAAAGGAGACACCTCCGGTACGCTGATCGATGCGTACGTGCGTAGCCGTGTCCTGTCCGCCACGCCTGCTCCCCGCGATGCAAAGGAAACGTCACGCACCGTCAACATTCGGCGCATTGTCGTGTCACGTCCAGTGGAAACCGAGCAGGAGGTCGAGGTGCGTGAGCAAGGGTACGCGACCACTATTGCACCTCCGCCGTATGAGCACAAGCGGGATGTAAGCGAAGTGACCCCGACCGAACGTGCCGATCGAGGACAGCAACCGCCGGTGTACGTTAATGCTAAGCCACCAGCATTCGCCGATGATCGAGATCAGTAGGTTAGCGAAATTGCGTTTGGTTCAGGAACCGCACGAGACAATACCATTTACGCACAGCAAGCAACAGACGGCATTTTGTAGGCAGCTT] [+] EMBL AL693627 [GATTGCCCCAGGTTTTACTGCGATCGTATGGAAAAGCGCCTGAGTATCTTCCACCCACCGGTCAGACACCGTCGCCGACCACACCATCACAGCCACCCGTGGCCACTACGACGCCGACACCACCGACTAGCGCCACGCCCGATTCCTACCCAAGCTATGACGATGAGTACGACGACTCGATCGTGATCGATGCGCGAAGCGGTGCCGGAACTAACTACTCCGACTACTCTTCCACGGATTCTGATGACGGAGATGTTACGGTTACCGCGGCCACAACTTCAGCCACTACCCGCTCGTTTACCATCACGAAAAGTACCGCGGCACGGAGGAACAAACTCAGACAATACTGGGTGGATCGTCTTCGATTGAGGTGAGCTATGCCACACGCACCAACCGGCAAGCGACATCGTTGCGTTTGGATCCATCGACCGCTTCGGGTGCGTTCGACTTCGGGCCATCTTTCCGTGGATCCTTCCCAACGACTACTTTCCCACCGAGCACTACCAACGTACCGTCGACGGTCGGTTCCAGCTCCAGCTCAACGTCCAGCGGCAGTACGCCACAGCGCTCCGTGACGATCATCTCTTCTACCACGCCACGCACTGTTGTGTCGGCACGATTCAGCGAAACGGGTGACTCCACTTCTCAGAGCACATCTTCGGCACGGACGACGTATGAATCGCAAAGTGTGACATCGGGCATTACCTCGCAATCGGTCGTTGTTGGACAGGGACTGACGCAGGAACAGATCCATGCCAACCAGGAACAGTTCATCAAGCTGCTGTCCGAG ] [+] EMBL BX620832 [ ACTCCACTTCTCAGAGCACATCTTCGGCACGGACGGCGTATGAATCGCAAAGTGTTACATCGGGCATTACCTCGCAATCGGTCGTTGTTGGGCAGGGACTGACGCAGGAACAGATCCATGCCAACCAGGAACAGTTCATCAAGCTGCTGTCCGAGCGGGATTCGATTGCGGAGGTTGGCTTTGGACCGAAAGGAGACACCTCCGGTACGCTGATCGATGCGTACGTGCGTAGCCGTGTCCTGTCCGCCACGCCTGCTCCCCGCGATGCAAAGGAAACGTCACGCACCGTCAACATTCGGCGCATTGTCGTGTCACGTCCAGTGGAAACCGAGCAGGAGGTCGAGGTGCGTGAGCAAGGGTACGCGACCACTATTGCACCTCCGCCGTATGAGCACAAGCGGGATGTAAGCGAAGTGACCCCGACCGAACGTGCCGATCGAGGACAGCAACCGCCGGTGTACGTTAATGCTAAGCCACCAGCATTCGCCGATGATCGAGATCAGTAGGTTAGCGAAATTGCGTTTGGTTCAGGAACCGCACGAGACAATACCATTTACGCACAGCAAGCAACAGACGGCATTTTGTAGGCAGCTT] consensusID : consensus_6045#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 702 fasta sequence [CATACGCCACCCACCTGGCGCCCCATCCATTCGTGTACCATCCGGCTAATGCTGGCCATCTGCTGCACCATGTAGCTTACGTAGATCAGCATTCGCCAGCTCTCTTGGCGACGCATCCCACCACAGCACATCCGGCCACCGTTTTCCATGTTCCATCGTCTACTCCGCTCTATCCCGTCACGCCCGCCACCACTAACGACGACTGCGATCGTAATGGAAAAGCGCCTGAGTATCTTCCACCCACCGGTCAGACACCGTCGCCGACCACACCATCACAGCCACCCGTGGCCACTACGACGCCGACACCACCGACTAGCGCCACGCCCGATTCCTACCCAAGCTATGACGATGAGTACGACGACTCGATCGTGATCGATGCGCGAAGCGGTGCCGGAACTAACTACTCCGACTACTCTTCCACGGATTCTGATGACGGAGATGTTACGGTTACCGCGGCCACAACTTCAGCCACTACCCCGCTCGTTTACCATCACGAAAAGTACCGCGGCACGGAGGAACAAACTCAGACAAGACTGGGTGGATCGTCTTCGATTGAGGTGAGCTATGCCACACGCACCACACCGGCAAGCGACATCGTTGCGTTTGATCCATCGACCGCTTCGGGTGCGTTCGACTTCGGGNCATCTTTCCGTGGATCCTTCCCAACGACTACTTTNCCACCGAGCACTACCAACGTACCGT] [+] EMBL BX624841 [CATACGCCACCCACCTGGCGCCCCATCCATTCGTGTACCATCCGGCTAATGCTGGCCATCTGCTGCACCATGTAGCTTACGTAGATCAGCATTCGCCAGCTCTCTTGGCGACGCATCCCACCACAGCACATCCGGCCACCGTTTTCCATGTTCCATCGTCTACTCCGCTCTATCCCGTCACGCCCGCCACCACTAACGACGACTGCGATCGTAATGGAAAAGCGCCTGAGTATCTTCCACCCACCGGTCAGACACCGTCGCCGACCACACCATCACAGCCACCCGTGGCCACTACGACGCCGACACCACCGACTAGCGCCACGCCCGATTCCTACCCAAGCTATGACGATGAGTACGACGACTCGATCGTGATCGATGCGCGAAGCGGTGCCGGAACTAACTACTCCGACTACTCTTCCACGGATTCTGATGACGGAGATGTTACGGTTACCGCGGCCACAACTTCAGCCACTACCCCGCTCGTTTACCATCACGAAAAGTACCGCGGCACGGAGGAACAAACTCAGACAAGACTGGGTGGATCGTCTTCGATTGAGGTGAGCTATGCCACACGCACCACACCGGCAAGCGACATCGTTGCGTTTGATCCATCGACCGCTTCGGGTGCGTTCGACTTCGGGNCATCTTTCCGTGGATCCTTCCCAACGACTACTTTNCCACCGAGCACTACCAACGTACCGT] consensusID : consensus_6045#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 579 fasta sequence [GGCAGAATCGGCACGNNGGACATCGTCTACTCCGCTCTATCCCGTCACGCCCGCCACCACTAACGACGACTGCGATCGTAATGGAAAAGCGCCTGAGTATCTTCCACCCACCGGCCAGACACCGGTCGCCGACCACACCATCACAGCCACCCGTGGCCACTACGACGCCGACACCACCGACTAGCGCCACGCCCGATTCCTACCCAAGCTATGACGATGAGTACGACGACTCGATCGTGATCGATGCGCGAAGCGGTGCCGGAACTAACTACTCCGACTACTCTTCCACGGACTCTGATGACGGAGATGTTACGGTTACCGCGGGCACAACTTCAGGCACTACCCCGCTCGTCTACCATCACGAAAAGTACCGCGGCACGGAGGAACAAACTCAGACAAGACTGGGTGGATCGTCTTCGATTGAGGTGAGCTATGCCACACGCACCACGACCGGCAAGTGACATCGTTGCGGTTTGAGTCCATCGACCGCTTCAGGGTGCGGTTCGACGTTCGGGCCATCTTTTCCCGTGGATCCCTTCCCAAAGGACTAACGTTGCCCACGCGGAGGAACCAANCNAA] [+] EMBL BX468088 [GGCAGAATCGGCACGNNGGACATCGTCTACTCCGCTCTATCCCGTCACGCCCGCCACCACTAACGACGACTGCGATCGTAATGGAAAAGCGCCTGAGTATCTTCCACCCACCGGCCAGACACCGGTCGCCGACCACACCATCACAGCCACCCGTGGCCACTACGACGCCGACACCACCGACTAGCGCCACGCCCGATTCCTACCCAAGCTATGACGATGAGTACGACGACTCGATCGTGATCGATGCGCGAAGCGGTGCCGGAACTAACTACTCCGACTACTCTTCCACGGACTCTGATGACGGAGATGTTACGGTTACCGCGGGCACAACTTCAGGCACTACCCCGCTCGTCTACCATCACGAAAAGTACCGCGGCACGGAGGAACAAACTCAGACAAGACTGGGTGGATCGTCTTCGATTGAGGTGAGCTATGCCACACGCACCACGACCGGCAAGTGACATCGTTGCGGTTTGAGTCCATCGACCGCTTCAGGGTGCGGTTCGACGTTCGGGCCATCTTTTCCCGTGGATCCCTTCCCAAAGGACTAACGTTGCCCACGCGGAGGAACCAANCNAA] [+] EMBL AL931631 [ GAATC GCCCG AGGTNATCGTCTACTCCGCTCTATCCCGTCACGCCCGCCACCACTAACGACGACTGCGATCGTAATGGAAAAGCGCCTGAGTATCTTCCACCCACCGGCCAGACACC GTCGCCGACCACACCATCACAGCCACCCGTGGCCACTACGACGCCGACACCACCGACTAGCGCCACGCCCGATTCCTACCCAAGCTATGACGATGAGTACGACGACTCGATCGTGATCGATGCGCGAAGCGGTGCCGGAACTAACTACTCCGACTACTCTTCCACGGACTCTGATGACGGAGATGTTACGGTTACCGCGGCCACAACTTCAGCCACTACCCCGCTCGTCTACCATCACGAAAAGTACCGCGGCACGGAGGAACAAACTCAGACAAGACTGGGTGGATCGTCTTCGATTGAGGTGAGCTATGCCACACGCACCAC ACCGGCAAGTGACATC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6045#1 CATACGCCACCCACCTGGCGCCCCATCCATTCGTGTACCATCCGGCTAATGCTGGCCATC 60 consensus_6045#2 ------------------------------------------------------------ consensus_6045#0 ------------------------------------------------------------ consensus_6045#1 TGCTGCACCATGTAGCTTACGTAGATCAGCATTCGCCAGCTCTCTTGGCGACGCATCCCA 120 consensus_6045#2 ------------------------------------------------------------ consensus_6045#0 ------------------------------------------------------------ consensus_6045#1 CCACAGCACATCCGGCCACCGTTTTCCATGTTCCATCGTCTACTCCGCTCTATCCCGTCA 180 consensus_6045#2 -------------GGCAGAATCGGCACGNNGGACATCGTCTACTCCGCTCTATCCCGTCA 47 consensus_6045#0 ------------------------------------------------------------ consensus_6045#1 CGCCCGCCACCACTAACGACGACTGCGATCGTAATGGAAAAGCGCCTGAGTATCTTCCAC 240 consensus_6045#2 CGCCCGCCACCACTAACGACGACTGCGATCGTAATGGAAAAGCGCCTGAGTATCTTCCAC 107 consensus_6045#0 -----GATTGCCCCAGGTTTTACTGCGATCGTA-TGGAAAAGCGCCTGAGTATCTTCCAC 54 * * * * ************ ************************** consensus_6045#1 CCACCGGTCAGACACCG-TCGCCGACCACACCATCACAGCCACCCGTGGCCACTACGACG 299 consensus_6045#2 CCACCGGCCAGACACCGGTCGCCGACCACACCATCACAGCCACCCGTGGCCACTACGACG 167 consensus_6045#0 CCACCGGTCAGACACCG-TCGCCGACCACACCATCACAGCCACCCGTGGCCACTACGACG 113 ******* ********* ****************************************** consensus_6045#1 CCGACACCACCGACTAGCGCCACGCCCGATTCCTACCCAAGCTATGACGATGAGTACGAC 359 consensus_6045#2 CCGACACCACCGACTAGCGCCACGCCCGATTCCTACCCAAGCTATGACGATGAGTACGAC 227 consensus_6045#0 CCGACACCACCGACTAGCGCCACGCCCGATTCCTACCCAAGCTATGACGATGAGTACGAC 173 ************************************************************ consensus_6045#1 GACTCGATCGTGATCGATGCGCGAAGCGGTGCCGGAACTAACTACTCCGACTACTCTTCC 419 consensus_6045#2 GACTCGATCGTGATCGATGCGCGAAGCGGTGCCGGAACTAACTACTCCGACTACTCTTCC 287 consensus_6045#0 GACTCGATCGTGATCGATGCGCGAAGCGGTGCCGGAACTAACTACTCCGACTACTCTTCC 233 ************************************************************ consensus_6045#1 ACGGATTCTGATGACGGAGATGTTACGGTTACCGCGGCCACAACTTCAGCCACTACCCCG 479 consensus_6045#2 ACGGACTCTGATGACGGAGATGTTACGGTTACCGCGGGCACAACTTCAGGCACTACCCCG 347 consensus_6045#0 ACGGATTCTGATGACGGAGATGTTACGGTTACCGCGGCCACAACTTCAGCCACTACCC-G 292 ***** ******************************* *********** ******** * consensus_6045#1 CTCGTTTACCATCACGAAAAGTACCGCGGCACGGAGGAACAAACTCAGACAAGACTGGGT 539 consensus_6045#2 CTCGTCTACCATCACGAAAAGTACCGCGGCACGGAGGAACAAACTCAGACAAGACTGGGT 407 consensus_6045#0 CTCGTTTACCATCACGAAAAGTACCGCGGCACGGAGGAACAAACTCAGACAATACTGGGT 352 ***** ********************************************** ******* consensus_6045#1 GGATCGTCTTCGATTGAGGTGAGCTATGCCACACGCACCAC-ACCGGCAAGCGACATCGT 598 consensus_6045#2 GGATCGTCTTCGATTGAGGTGAGCTATGCCACACGCACCACGACCGGCAAGTGACATCGT 467 consensus_6045#0 GGATCGTCTTCGATTGAGGTGAGCTATGCCACACGCACCA--ACCGGCAAGCGACATCGT 410 **************************************** ********* ******** consensus_6045#1 TGCG-TTTGA-TCCATCGACCGCTTC-GGGTGCG-TTCGAC-TTCGGGNCATCTTT--CC 651 consensus_6045#2 TGCGGTTTGAGTCCATCGACCGCTTCAGGGTGCGGTTCGACGTTCGGGCCATCTTTTCCC 527 consensus_6045#0 TGCG-TTTGGATCCATCGACCGCTTC-GGGTGCG-TTCGAC-TTCGGGCCATCTTT--CC 464 **** **** *************** ******* ****** ****** ******* ** consensus_6045#1 GTGGATCCTTCCC--AACGACTAC--TTTNCCACCGAGCACTACCAACGTACCGT----- 702 consensus_6045#2 GTGGATCCCTTCCCAAAGGACTAACGTTGCCCACGCGGAGGAACCAANCNAA-------- 579 consensus_6045#0 GTGGATCCTTCCC--AACGACTAC--TTTCCCACCGAGCACTACCAACGTACCGTCGACG 520 ******** * ** ** ***** ** **** * ***** * consensus_6045#1 ------------------------------------------------------------ consensus_6045#2 ------------------------------------------------------------ consensus_6045#0 GTCGGTTCCAGCTCCAGCTCAACGTCCAGCGGCAGTACGCCACAGCGCTCCGTGACGATC 580 consensus_6045#1 ------------------------------------------------------------ consensus_6045#2 ------------------------------------------------------------ consensus_6045#0 ATCTCTTCTACCACGCCACGCACTGTTGTGTCGGCACGATTCAGCGAAACGGGTGACTCC 640 consensus_6045#1 ------------------------------------------------------------ consensus_6045#2 ------------------------------------------------------------ consensus_6045#0 ACTTCTCAGAGCACATCTTCGGCACGGACGACGTATGAATCGCAAAGTGTGACATCGGGC 700 consensus_6045#1 ------------------------------------------------------------ consensus_6045#2 ------------------------------------------------------------ consensus_6045#0 ATTACCTCGCAATCGGTCGTTGTTGGACAGGGACTGACGCAGGAACAGATCCATGCCAAC 760 consensus_6045#1 ------------------------------------------------------------ consensus_6045#2 ------------------------------------------------------------ consensus_6045#0 CAGGAACAGTTCATCAAGCTGCTGTCCGAGCGGGATTCGATTGCGGAGGTTGGCTTTGGA 820 consensus_6045#1 ------------------------------------------------------------ consensus_6045#2 ------------------------------------------------------------ consensus_6045#0 CCGAAAGGAGACACCTCCGGTACGCTGATCGATGCGTACGTGCGTAGCCGTGTCCTGTCC 880 consensus_6045#1 ------------------------------------------------------------ consensus_6045#2 ------------------------------------------------------------ consensus_6045#0 GCCACGCCTGCTCCCCGCGATGCAAAGGAAACGTCACGCACCGTCAACATTCGGCGCATT 940 consensus_6045#1 ------------------------------------------------------------ consensus_6045#2 ------------------------------------------------------------ consensus_6045#0 GTCGTGTCACGTCCAGTGGAAACCGAGCAGGAGGTCGAGGTGCGTGAGCAAGGGTACGCG 1000 consensus_6045#1 ------------------------------------------------------------ consensus_6045#2 ------------------------------------------------------------ consensus_6045#0 ACCACTATTGCACCTCCGCCGTATGAGCACAAGCGGGATGTAAGCGAAGTGACCCCGACC 1060 consensus_6045#1 ------------------------------------------------------------ consensus_6045#2 ------------------------------------------------------------ consensus_6045#0 GAACGTGCCGATCGAGGACAGCAACCGCCGGTGTACGTTAATGCTAAGCCACCAGCATTC 1120 consensus_6045#1 ------------------------------------------------------------ consensus_6045#2 ------------------------------------------------------------ consensus_6045#0 GCCGATGATCGAGATCAGTAGGTTAGCGAAATTGCGTTTGGTTCAGGAACCGCACGAGAC 1180 consensus_6045#1 ------------------------------------------------- consensus_6045#2 ------------------------------------------------- consensus_6045#0 AATACCATTTACGCACAGCAAGCAACAGACGGCATTTTGTAGGCAGCTT 1229 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||