cluster # 6050

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Anopheles gambiae
cluster # 6050 cluster # 6050 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_6050#0 length = 858 sequences # 4

consensus_6050#1 length = 633 sequences # 1

consensusID : consensus_6050#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 858
fasta sequence

                              [CCGGTTCCTTGCGAGACGCACTTTGGTGTTAGGACAGTTTTTTGCACACTTTTCACCCCCCAGAATGGGCCGCAAGGATAAGAACAAGAAAAAGGGCCAAGGAGCCGAAAAAACGTCCATGAAAACGGACAAAAAGCTTGTAGCGAAGCAGAAAAAGCTGCTCGCCAAGCTGGGTGAGGAAGACATCGAAAACATTGTGGCCAAGTACGAAACGAAGGACACG-AAATCGTCCGATCTCACCGAAATCGTTTGCCCGCCGCCAACGGCCCGGGTAAACGTGGGCATCTGTGCCCATCCGGCCGATCGGGAGGAAATCTTCATCCACGGGGGAGAGTTTTTCAACGGCCAGCAGACGGTCATCTACGGTGACTTTTACTCGTACAACGTGGCCAAGAATGAGTGGAAAACGCTGAAATCCTCCATCTGTCCGGCACCACGCAGCGGCCATCAGATGGTACCGGTCGCGACGGACGGTGGCCAGATCTGGCTGTTCGGGGGCGAGTATGCGTCGCCCTCGCAGCTGCAGTTCTACCACTTCCGCGACCTGTGGGTGTACCGGATGGCAAAGAAGCAGTGGGAAAAGATAAACGCCCCGAACGGTCCGAGCGCTCGCAGTGGCCATCGGATGGTGGTGACGCGCAAAAAGCTATTCGTGTTTGGCGGCTTCCACGACAACAACGCCTCGTACCGGTACTTTAATGACCTGTACGCGTTCTCGCTGGAAAGCTACACCTGGACGAAGATAGAGGGGGNCGGGCCGGTCCCTCCCCGCGCTCCGGTTGCTGCATGGTGGCGAACGCCGACGGGAAAATCCTCATCTGGGGCGGATACTCGAAGACCAGCGTGAAGAAGGAATTG]

[+] EMBL BM575495             [CCGGTTCCTTGCGAGACGCACTTTGGTGTTAGGACAGTTTTTTGCACACTTTTCACCCCCCAAAATGGGCCGCAAGGATAAGAACAAGAAAAAGGGCCAAGGAGCCGAAAAAACGTCCATGAAAACGGACAAAAAGCTTGTAGCGAAGCAGAAAAAGCTGCTCGCCAAGCTGGGTGAGGAAGATATCGAAAACATTGTAGCCAAGTACGAAACGAAGGACACG AAATCGTCCGATCTCACCGAAATCGTTTGCCCGCCGCCAACGGCCCGGGTAAACGTGGGCATCTGCGCCCATCCGGCCGATCGGGAGGAAATCTTCATCCATGGGGGAGAGTTTTTCAACGGCCAGCAGACGGTCATCTACGGTGACTTTTACTCGTATAATGTGGCCAAGAATGAGTGGAAAGCGCTGAAATCCTCCATCTGTCCGGCACCGCGCAGCGGCCATCAGATGGTACCGGTCGCGACGGACGGTGGCCAGATCTGGCTGTTCGGGGGCGAGTATGCGTCGCCCTCGCAGCTGCAATTCTACCACTTCCGCGACCTCTGGGTGTACCGGATGGCGAAGAAGCAGTGGGAAAAGATTAACGCCCCGAACGGTCCGAGCGCTCGCAGTGGCCATCGGATGGTGGTGACGCGCAAAAAGCTATTCGTGTTTGGCGGCTTCCACGACAACAACGCCTCGTACCGGTACTTTAA                                                                                                                                                               ]
[+] EMBL BX622944             [                        GGTGTTAGGACAGTTTTTTGCACACTTTTCACCCCCCAGAATGGGCCGCAAGGATAAGAACAAGAAAAAGGGCCAAGGAGCCGAAAAAACGTCCATGAAAACGGACAAAAAGCTTGTAGCGAAGCAGAAAAAGCTGCTCGCCAAGCTGGGTGAGGAAGACATCGAAAACATTGTGGCCAAGTACGAAACGAAGGACACG AAATCGTCCGATCTCACCGAAATCGTTTGCCCGCCGCCAACGGCCCGGGTAAACGTGGGCATCTGTGCCCATCCGGCCGATCGGGAGGAAATCTTCATCCACGGGGGAGAGTTTTTCAACGGCCAGCAGACGGTCATCTACGGTGACTTTTACTCGTACAACGTGGCCAAGAATGAGTGGAAAACGCTGAAATCCTCCATCTGTCCGGCACCACGCAGCGGCCATCAGATGGTACCGGTCGCGACGGACGGTGGCCAGATCTGGCTGTTCGGGGGCGAGTATGCGTCGCCCTCGCAGCTGCAGTTCTACCACTTCCGCGACCTGTGGGTGTACCGGATGGCAAAGAAGCAGTGGGAAAAGATAAACGCCCCGAACGGTCCGAGCGCTCGCAGTGGCCATCGGATGGTGGTGACGCGCAAAAAGCTATTCGTGTTTGGCGGCTTCCACGACAACAACGCCTCGTACCGGTACTTTAATGACCTGTACGCGTTCTCGCTGGAAAGCTACACCTGGA                                                                                                                         ]
[+] EMBL BX624035             [                                         TTGCACACTTTTCACCCCCCAGAATGGGCCGCAAGGATAAGAACAAGAAAAAGGGCCAAGGAGCCGAAAAAACGTCCATGAAAACGGACAAAAAGCTTGTAGCGAAGCAGAAAAAGCTGCTCGCCAAGCTGGGTGAGGAAGACATCGAAAACATTGTGGCCAAGTACGAAACGAAGGACACG AAATCGTCCGATCTCACCGAAATCGTTTGCCCGCCGCCAACGGCCCGGGTAAACGTGGGCATCTGTGCCCATCCGGCCGATCGGGAGGAAATCTTCATCCACGGGGGAGAGTTTTTCAACGGCCAGCAGACGGTCATCTACGGTGACTTTTACTCGTACAACGTGGCCAAGAATGAGTGGAAAACGCTGAAATCCTCCATCTGTCCGGCACCACGCAGCGGCCATCAGATGGTACCGGTCGCGACGGACGGTGGCCAGATCTGGCTGTTCGGGGGCGAGTATGCGTCGCCCTCGCAGCTGCAGTTCTACCACTTCCGCGACCTGTGGGTGTACCGGATGGCAAAGAAGCAGTGGGAAAAGATAAACGCCCCGAACGGTCCGAGCGCTCGCAGTGGCCATCGGATGGTGGTGACGCGCAAAAAGCTATTCGTGTTTGGCGGCTTCCACGACAACAACGCCTCGTACCGGTACTTTAATGACCTGTACGCGTTCTCGCTGGAAAGCTACACCTGGACGAAGATAGAGGGGGNCGGGCCGGTCCCTCCCCGCGCTCCGGTTGCTGCATGGTGGCGAACGCCGACGGGAAAATCCTCATCTGGGGCGGATACTCGAAGACCAGCGTGAAGAAGGAATTG]
[+] EMBL BX602660             [                                                    TCACCCCCCAGAATGGGCCGCAAGGATAAGAACAAGAAAAAGGGCCAAGGAGCCGAAAAAACGTCCATGAAAACGGACAAAAAGCTTGTAGCGAAGCAGAAAAAGCTGCTCGCCAAGCTGGGTGAGGAAGACATCGAAAACATTGTGGCCAAGTACGAAACGAAGGACACGAAAATCGTCCGATCTCACCGAAATCGTTTGCCCGCCGCCAACGGCCCGGGTAAACGTGGGCATCTGTGCCCATCCGGCCGATCGGGAGGAAATCTTCATCCACGGGGGAGAGTTTTTCAACGGCCAGCAGACGGTCATCTACGGTGACTTTTACTCGTACAACGTGGCCAAGAATGAGTGGAAAACGCTGAAATCCTCCATCT                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]




>consensus_6050#0
CCGGTTCCTTGCGAGACGCACTTTGGTGTTAGGACAGTTTTTTGCACACTTTTCACCCCC
CAGAATGGGCCGCAAGGATAAGAACAAGAAAAAGGGCCAAGGAGCCGAAAAAACGTCCAT
GAAAACGGACAAAAAGCTTGTAGCGAAGCAGAAAAAGCTGCTCGCCAAGCTGGGTGAGGA
AGACATCGAAAACATTGTGGCCAAGTACGAAACGAAGGACACGAAATCGTCCGATCTCAC
CGAAATCGTTTGCCCGCCGCCAACGGCCCGGGTAAACGTGGGCATCTGTGCCCATCCGGC
CGATCGGGAGGAAATCTTCATCCACGGGGGAGAGTTTTTCAACGGCCAGCAGACGGTCAT
CTACGGTGACTTTTACTCGTACAACGTGGCCAAGAATGAGTGGAAAACGCTGAAATCCTC
CATCTGTCCGGCACCACGCAGCGGCCATCAGATGGTACCGGTCGCGACGGACGGTGGCCA
GATCTGGCTGTTCGGGGGCGAGTATGCGTCGCCCTCGCAGCTGCAGTTCTACCACTTCCG
CGACCTGTGGGTGTACCGGATGGCAAAGAAGCAGTGGGAAAAGATAAACGCCCCGAACGG
TCCGAGCGCTCGCAGTGGCCATCGGATGGTGGTGACGCGCAAAAAGCTATTCGTGTTTGG
CGGCTTCCACGACAACAACGCCTCGTACCGGTACTTTAATGACCTGTACGCGTTCTCGCT
GGAAAGCTACACCTGGACGAAGATAGAGGGGGNCGGGCCGGTCCCTCCCCGCGCTCCGGT
TGCTGCATGGTGGCGAACGCCGACGGGAAAATCCTCATCTGGGGCGGATACTCGAAGACC
AGCGTGAAGAAGGAATTG

consensusID : consensus_6050#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 633
fasta sequence

                              [CCGGACGCACTTTGGTTTTTTGCACACTTTTCACCCCCCAAAATGGGCCGCAAGGATAAGAACAAGAAAAAGGGCCAAGGAGCCGAAAAAACGTCCATGAAAACGGACAAAAAGCTTGTAGCGAAGCAGAAAAAGCTGCTCGCCAAGCTGGGTGAGGAAGATATCGAAAACATTGTAGCCAAGTACGAAACGAAGGACACGAAATCGTCCGATCTCACCGAAATCGTTTGCCCGCCGCCAACGGCCCGGGTAAACGTGGGCATCTGCGCCCATCCGGCCGATCGGGAGGAAATCTTCATCCACGGGGGAGAGTTTTTCAACGGCCAGCAGACGGTCATCTACGGTGACTTTTACTCGTACAACGTGGCCAAGAATGAGTGGAAAACGCTGAAATCCTCCATCTGTCCGGCACCACGCAGTGGCCATCAGATGGTACCGGTCGCGACGGACGGTGGCCAGATCTGGCTGTTCGGGGGCGAGTATGCGTCGCCCTCCCAGCTGCAGTTTTACCACTTCCGCGACCTGTGGGTGTACCGGATGGCGAAGAAGCAGTGGGAAAAGATCAACGCCCCGAACGGTCCGAGCGCTCGCAGTGGCCATCGGATGGTGGTGACGCGCAAAAAGCTATTTCGT]

[+] EMBL BM611280             [CCGGACGCACTTTGGTTTTTTGCACACTTTTCACCCCCCAAAATGGGCCGCAAGGATAAGAACAAGAAAAAGGGCCAAGGAGCCGAAAAAACGTCCATGAAAACGGACAAAAAGCTTGTAGCGAAGCAGAAAAAGCTGCTCGCCAAGCTGGGTGAGGAAGATATCGAAAACATTGTAGCCAAGTACGAAACGAAGGACACGAAATCGTCCGATCTCACCGAAATCGTTTGCCCGCCGCCAACGGCCCGGGTAAACGTGGGCATCTGCGCCCATCCGGCCGATCGGGAGGAAATCTTCATCCACGGGGGAGAGTTTTTCAACGGCCAGCAGACGGTCATCTACGGTGACTTTTACTCGTACAACGTGGCCAAGAATGAGTGGAAAACGCTGAAATCCTCCATCTGTCCGGCACCACGCAGTGGCCATCAGATGGTACCGGTCGCGACGGACGGTGGCCAGATCTGGCTGTTCGGGGGCGAGTATGCGTCGCCCTCCCAGCTGCAGTTTTACCACTTCCGCGACCTGTGGGTGTACCGGATGGCGAAGAAGCAGTGGGAAAAGATCAACGCCCCGAACGGTCCGAGCGCTCGCAGTGGCCATCGGATGGTGGTGACGCGCAAAAAGCTATTTCGT]




>consensus_6050#1
CCGGACGCACTTTGGTTTTTTGCACACTTTTCACCCCCCAAAATGGGCCGCAAGGATAAG
AACAAGAAAAAGGGCCAAGGAGCCGAAAAAACGTCCATGAAAACGGACAAAAAGCTTGTA
GCGAAGCAGAAAAAGCTGCTCGCCAAGCTGGGTGAGGAAGATATCGAAAACATTGTAGCC
AAGTACGAAACGAAGGACACGAAATCGTCCGATCTCACCGAAATCGTTTGCCCGCCGCCA
ACGGCCCGGGTAAACGTGGGCATCTGCGCCCATCCGGCCGATCGGGAGGAAATCTTCATC
CACGGGGGAGAGTTTTTCAACGGCCAGCAGACGGTCATCTACGGTGACTTTTACTCGTAC
AACGTGGCCAAGAATGAGTGGAAAACGCTGAAATCCTCCATCTGTCCGGCACCACGCAGT
GGCCATCAGATGGTACCGGTCGCGACGGACGGTGGCCAGATCTGGCTGTTCGGGGGCGAG
TATGCGTCGCCCTCCCAGCTGCAGTTTTACCACTTCCGCGACCTGTGGGTGTACCGGATG
GCGAAGAAGCAGTGGGAAAAGATCAACGCCCCGAACGGTCCGAGCGCTCGCAGTGGCCAT
CGGATGGTGGTGACGCGCAAAAAGCTATTTCGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_6050#0      CCGGTTCCTTGCGAGACGCACTTTGGTGTTAGGACAGTTTTTTGCACACTTTTCACCCCC 60
consensus_6050#1      -----------CCGGACGCACTTTGGT-----------TTTTTGCACACTTTTCACCCCC 38
                                 *  *************           **********************

consensus_6050#0      CAGAATGGGCCGCAAGGATAAGAACAAGAAAAAGGGCCAAGGAGCCGAAAAAACGTCCAT 120
consensus_6050#1      CAAAATGGGCCGCAAGGATAAGAACAAGAAAAAGGGCCAAGGAGCCGAAAAAACGTCCAT 98
                      ** *********************************************************

consensus_6050#0      GAAAACGGACAAAAAGCTTGTAGCGAAGCAGAAAAAGCTGCTCGCCAAGCTGGGTGAGGA 180
consensus_6050#1      GAAAACGGACAAAAAGCTTGTAGCGAAGCAGAAAAAGCTGCTCGCCAAGCTGGGTGAGGA 158
                      ************************************************************

consensus_6050#0      AGACATCGAAAACATTGTGGCCAAGTACGAAACGAAGGACACGAAATCGTCCGATCTCAC 240
consensus_6050#1      AGATATCGAAAACATTGTAGCCAAGTACGAAACGAAGGACACGAAATCGTCCGATCTCAC 218
                      *** ************** *****************************************

consensus_6050#0      CGAAATCGTTTGCCCGCCGCCAACGGCCCGGGTAAACGTGGGCATCTGTGCCCATCCGGC 300
consensus_6050#1      CGAAATCGTTTGCCCGCCGCCAACGGCCCGGGTAAACGTGGGCATCTGCGCCCATCCGGC 278
                      ************************************************ ***********

consensus_6050#0      CGATCGGGAGGAAATCTTCATCCACGGGGGAGAGTTTTTCAACGGCCAGCAGACGGTCAT 360
consensus_6050#1      CGATCGGGAGGAAATCTTCATCCACGGGGGAGAGTTTTTCAACGGCCAGCAGACGGTCAT 338
                      ************************************************************

consensus_6050#0      CTACGGTGACTTTTACTCGTACAACGTGGCCAAGAATGAGTGGAAAACGCTGAAATCCTC 420
consensus_6050#1      CTACGGTGACTTTTACTCGTACAACGTGGCCAAGAATGAGTGGAAAACGCTGAAATCCTC 398
                      ************************************************************

consensus_6050#0      CATCTGTCCGGCACCACGCAGCGGCCATCAGATGGTACCGGTCGCGACGGACGGTGGCCA 480
consensus_6050#1      CATCTGTCCGGCACCACGCAGTGGCCATCAGATGGTACCGGTCGCGACGGACGGTGGCCA 458
                      ********************* **************************************

consensus_6050#0      GATCTGGCTGTTCGGGGGCGAGTATGCGTCGCCCTCGCAGCTGCAGTTCTACCACTTCCG 540
consensus_6050#1      GATCTGGCTGTTCGGGGGCGAGTATGCGTCGCCCTCCCAGCTGCAGTTTTACCACTTCCG 518
                      ************************************ *********** ***********

consensus_6050#0      CGACCTGTGGGTGTACCGGATGGCAAAGAAGCAGTGGGAAAAGATAAACGCCCCGAACGG 600
consensus_6050#1      CGACCTGTGGGTGTACCGGATGGCGAAGAAGCAGTGGGAAAAGATCAACGCCCCGAACGG 578
                      ************************ ******************** **************

consensus_6050#0      TCCGAGCGCTCGCAGTGGCCATCGGATGGTGGTGACGCGCAAAAAGCTATTCGTGTTTGG 660
consensus_6050#1      TCCGAGCGCTCGCAGTGGCCATCGGATGGTGGTGACGCGCAAAAAGCTATTT-CGT---- 633
                      ***************************************************   **    

consensus_6050#0      CGGCTTCCACGACAACAACGCCTCGTACCGGTACTTTAATGACCTGTACGCGTTCTCGCT 720
consensus_6050#1      ------------------------------------------------------------
                                                                                  

consensus_6050#0      GGAAAGCTACACCTGGACGAAGATAGAGGGGGNCGGGCCGGTCCCTCCCCGCGCTCCGGT 780
consensus_6050#1      ------------------------------------------------------------
                                                                                  

consensus_6050#0      TGCTGCATGGTGGCGAACGCCGACGGGAAAATCCTCATCTGGGGCGGATACTCGAAGACC 840
consensus_6050#1      ------------------------------------------------------------
                                                                                  

consensus_6050#0      AGCGTGAAGAAGGAATTG 858
consensus_6050#1      ------------------