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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6051#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1205 fasta sequence
[CGACCCACGCGTCCGGTTCCCACTTCATCTCGCAAGCGGCCACTTGTTGCTGTGTTGCAATTGAAATTACCTGGTGCAAGGAAATGTTACACTCGCAATTAAATACTAGTACCGCGTAGACATCCAGGCGAGCAAAGAGATGATTATAGAGGGAGGGAGAGAGAGAGAAGAAGCGTTTGGGAGAATAAGTTGCATTTTGAATATGAAACAAACAAAACAGGTAGCAATCCTAGTTACAAAATAATAATGAAATGGAAGGAGATGTAAAACGAAACAATTGTTAGGTGTGGTGTGGTGTACAGTTTGTCCCTCCAAAACTACACACACACAGCATTGAAAGCACATTTAAAAGTGGAAGACAAAAGCAAGCAACGAAGCAGAAAAGGAAGACAAAATATTGGTTATTATTCCTTCTCTCCCCTTTTTTTTACAAAATCATTTAAATACTTGACCCTCGAAACAAATCAAATCAATGGGGGCTAACCTGTTATGCATTCTATCTTACTTCTTAATCTTAATCAATGTAATGGGAGAAATGAAGCAGAAAACACACAAAAAACAAGAAGAATTAACCTATGTTCCTTCTATTTCCAGTTTCACCTTGTGTTTCGAAGAAGCAATGTAGTTGAAAAGAATGAAACCCCTTTACACAAATACATATACACACACTGCCGAAGTGAAAGAGGAAAATGAAATGAAAATGGAAACAAAAAAAGCAAAAAAAAAGAGATAAAGAAGTGAAAACAGGAAAAACAAATCAACAAAACATAAGAACAACCGAAACAACAGAAACCAAAAAAACCAAAACCGTAAACGAAAACTACCATATTGCAATAGTCTGAATTTAGCAAACGTGTGTTGCGGTATATAGTGTGAATAAAGTCTAGTAAAAAAAACAAATCAATTGAAGCTAATGCACACAAACACGATGAAGATGACGATGATGATGAAAATAGATAGTGAGAACAACAACAGAAACCGACTCTCGTGCACCACGTGCAACGAGCAGAGACAGCACACAGAGAGAAAGAGAGGGATTGGAATCTAAGATCCATATTGTAATTGAACTATGTGCATAATAACTACATTACATTGAAATATGCATCAGAACGGTAATTAGCAAATTAATTAAGCCTCCCAAACAAACCCCCTCCTCTCCCCATACCGAAAAGCGAATTGTGTACATGCGCAAGGCGGAGCGAAAG]
[+] EMBL BM656443 [CGACCCACGCGTCCGGTTCCCACTTCATCTCGCAAGCGGCCACTTGTTGCTGTGTTGCAATTGAAATTACCTGGTGCAAGGAAATGTTACACTCGCAATTAAATACTAGTACCGCGTAGACATCCAGGCGAGCAAAGAGATGATTATAGAGGGAGGGAGAGAGAGAGAAGAAGCGTTTGGGAGAATAAGTTGCATTTTGAATATGAAACAAACAAAACAGGTAGCAATCCTAGTTACAAAATAATAATGAAATGGAAGGAGATGTAAAACGAAACAATTGTTAGGTGTGGTGTGGTGTACAGTTTGTCCCTCCAAAACTACACACACACAGCATTGAAAGCACATTTAAAAGTGGAAGACAAAAGCAAGCAACGAAGCAGAAAAGGAAGACAAAATATTGGTTATTATTCCTTCTCTCCCCTTTTTTTTACAAAATCATTTAAATACTTGACCCTCGAAACAAATCAAATCAATGGGGGCTAACCTGTTATGCATTCTATCTTACTTCTTAATCTTAATCAATGTAATGGGAGAAATGAAGCAGAAAACACACAAAAAACAAGAAGAATTAACCTATGTTCCTTCTATTTCCAGTTTCACCTTGTGTTTCGAAGAAGCAATGTAGTTGAAAAGAATGAAACCCCTTTACACAAATACATATACACACACTGCCGAAGTGAAAGAGGAAAATGAAATG ]
[+] EMBL BM647412 [ CCGGTTTCACCTTGTGTTTCGAAGAAGCAATGTAGTTGAAAAGAATGAAACCCCTTTACACAAATACATATACACACACTGCCGAAGTGAAAGAGGAAAATGAAATGAAAATGGAAACAAAAAAAGCAAAAAAAAAGAGATAAAGAAGTGAAAACAGGAAAAACAAATCAACAAAACATAAGAACAACCGAAACAACAGAAACCAAAAAAACCAAAACCGTAAACGAAAACTACCATATTGCAATAGTCTGAATTTAGCAAACGTGTGTTGCGGTATATAGTGTGAATAAAGTCTAGTAAAAAAAACAAATCAATTGAAGCTAATGCACACAAACACGATGAAGATGACGATGATGATGAAAATAGATAGTGAGAACAACAACAGAAACCGACTCTCGTGCACCACGTGCAACGAGCAGAGACAGCACACAGAGAGAAAGAGAGGGATTGGAATCTAAGATCCATATTGTAATTGAACTATGTGCATAATAACTACATTACATTGAAATATGCATCAGAACGGTAATTAGCAAATTAATTAAGCCTCCCAAACAAACCCCCTCCTCTCCCCATACCGAAAAGCGAATTGTGTACATGCGCAAGGCGGAGCGAAAG]
consensusID : consensus_6051#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 881 fasta sequence
[TCTTCCGAGGTGGAGTTGGAGAAGCGACGATGAAGCCTTTTTTTTATTATTATATATTCTTTTGTTGTACTCTTACCCTTTTCTTCCTCCCTCGAACACGGTTCACAACAGATATTTTACTATCGATAGAAGAGTTACTCTAAATTGCTAATAGAAACTAATAGCAGCTTTAGCGGAGAAAGGATTCGATTTCATTACGCAAAAAATATTACGCAAGAAAAACCAACCCGACCGTCATCACACCCATACACATATACACACTCCTATCCACACGCTGGGTGTTGGTGATGGTGGGGCCGGCGGGGTGTGGTATATTTTGAGATTTTCTTTTGGAAGCAGAAACTAACTAAAACCATCGGTTATAGAAATTGTATTATAAATTGTGTGCTCCCTTTCCCTCTGTTCCCACTTCATCTCGCAAGCGGCCACTTGTTGCTGTGTTGCAATTGAAATTACCTGGTGCAAGGAAATGGTACACTCGCAATTAAATACTAGTACCGCGTAGACA-TCCAGGCGAGCAAAGAGATGATTATAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAGCGTTTGGGAGAATAAGTTGCATTTTGAATATGAAACAAACAAAACAGGTAGCAATCCTAGTTACAAAATAATAATGAAATGGAAGGAGATGTAAAACGAAACAATTGTTAGGCGTGGTGTGGTGTACAGTTTGTCCCTCCAAAACTACATACACACAGCATTGAAGCACATTTAAAAATGGAAGACAAAAGCAAGCAACGAAGCAGAAAAGGAAGACAAAAGAAGGCAATTGGTTATTATTCCTTTTCCCCCTTTTTTTACAAAATCATTTAAATACTTGACCCTCAAATCAAATCAAATCTACGGGG]
[+] EMBL BM577601 [TCTTCCGAGGTGGAGTTGGAGAAGCGACGATGAAGCCTTTTTTTTATTATTATATATTCTTTTGTTGTACTCTTACCCTTTTCTTCCTCCCTCGAACACGGTTCACAACAGATATTTTACTATCGATAGAAGAGTTACTCTAAATTGCTAATAGAAACTAATAGCAGCTTTAGCGGAGAAAGGATTCGATTTCATTACGCAAAAAATATTACGCAAGAAAAACCAACCCGACCGTCATCACACCCATACACATATACACACTCCTATCCACACGCTGGGTGTTGGTGATGGTGGGGCCGGCGGGGTGTGGTATATTTTGAGATTTTCTTTTGGAAGCAGAAACTAACTAAAACCATCGGTTATAGAAATTGTATTATAAATTGTGTGCTCCCTTTCCCTCTGTTCCCACTTCATCTCGCAAGCGGCCACTTGTTGCTGTGTTGCAATTGAAATTACCTGGTGCAAGGAAATGGTACACTCGCAATTAAATACTAGTACCGCGTAGACA TCCAGGCGAGCAAAGAGAT ]
[+] EMBL BM648854 [ ccgAAGAAAACCCAACCCGACCGTCATCACACCC ACACATATACACACTCCTATCCACACGCTGGGTGTTGGTGATGGTGGGGCCGGCGGTGTGTGGTATATTTTGAGATTTTTTTTTGTAAGCAAAAACTAACTAAAACCATCGTTTATAGAAATTGTATTATAAATTGTGTGCTCCCTTTCCCTCTGTTCCCACTTCATCTCGCAAGCGGCCACTAGTTGCTGTGTTGCAAATTAAATTACCTGGTGCAAGGAAATGTTACACTCGCAATTAAATACTAGTACCACGTACACACTCGA GCGAGCAAAGAGATGATTATAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAGCGTTTGGGAGAATAAGTTGCATTTTGAATATGAAACAAACAAAACAGGTAGCAATCCTAGTTACAAAATAATAATGAAATGGAAGGAGATGTAAAACGAAACAATTGTTAGGCGTGGTGTGGTGTACAGTTTGTCCCTCCAAAACTACATACACACAGCATTGAAGCACATTTAAAAATGGAAGACAAAAGCAAGCAACGAAGCAGAAAAGGAAGACAAAAGAAGGCAATTGGTTATTATTCCTTTTCCCCCTTTTTTTACAAAATCATTTAAATACTTGACCCTCAAATCAAATCAAATCTACGGGG]
consensusID : consensus_6051#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence
[CCGCCCACGCGTCCGTGTTCAGATCGCAAGCGGCCACTAGTTGCTGTGTTGCAAATTAAATTACCTGGTGCAAGGAAATGTTACACTCGCAATTAAATACTAGTACCACGTACACACTCGAGCGAGCAAAGAGATGATTATAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAGCGTTTGGGAGAATAAGTTGCATTTTGAATATGAAACAAACAAAACAGGTAGCAATCCTAGTTACAAAATAATAATGAAATGGAAGGAGATGTAAAACGAAACAATTGTTAGGCGTGGTGTGGTGTACAGTTTGTCCCTCCAAAACTACATACACACAGCATTGAAGCACATTTAAAAATGGAAGACAAAAGCAAGCAACGAAGCAGAAAAGGAAGACAAAAGAAGGCAATTGGTTATTATTCCTTTTCCCCCTTTTTTTACAAAATCATTTAAATACTTGACCCTCAAATCAAATCAAATCTACGGGGGCTAACCTGTTATGCATTCTATCTTACTTCTTAATCTTAATCAATGTAATGGGAGAAATGAAGCAGAAAACACACAAAAAACAAGAAGAATTAACCTATGTTCCTTCTATTTCCAGTTTCACCTTGTGTTTCGAAGAAGCAATGTAGTTGAAAAGAATGAAACCCCTTTACACAAATACATATACACACA]
[+] EMBL BM643788 [CCGCCCACGCGTCCGTGTTCAGATCGCAAGCGGCCACTAGTTGCTGTGTTGCAAATTAAATTACCTGGTGCAAGGAAATGTTACACTCGCAATTAAATACTAGTACCACGTACACACTCGAGCGAGCAAAGAGATGATTATAGAGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAGCGTTTGGGAGAATAAGTTGCATTTTGAATATGAAACAAACAAAACAGGTAGCAATCCTAGTTACAAAATAATAATGAAATGGAAGGAGATGTAAAACGAAACAATTGTTAGGCGTGGTGTGGTGTACAGTTTGTCCCTCCAAAACTACATACACACAGCATTGAAGCACATTTAAAAATGGAAGACAAAAGCAAGCAACGAAGCAGAAAAGGAAGACAAAAGAAGGCAATTGGTTATTATTCCTTTTCCCCCTTTTTTTACAAAATCATTTAAATACTTGACCCTCAAATCAAATCAAATCTACGGGGGCTAACCTGTTATGCATTCTATCTTACTTCTTAATCTTAATCAATGTAATGGGAGAAATGAAGCAGAAAACACACAAAAAACAAGAAGAATTAACCTATGTTCCTTCTATTTCCAGTTTCACCTTGTGTTTCGAAGAAGCAATGTAGTTGAAAAGAATGAAACCCCTTTACACAAATACATATACACACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6051#0 ------------------------------------------------------------
consensus_6051#2 ------------------------------------------------------------
consensus_6051#1 TCTTCCGAGGTGGAGTTGGAGAAGCGACGATGAAGCCTTTTTTTTATTATTATATATTCT 60
consensus_6051#0 ------------------------------------------------------------
consensus_6051#2 ------------------------------------------------------------
consensus_6051#1 TTTGTTGTACTCTTACCCTTTTCTTCCTCCCTCGAACACGGTTCACAACAGATATTTTAC 120
consensus_6051#0 ------------------------------------------------------------
consensus_6051#2 ------------------------------------------------------------
consensus_6051#1 TATCGATAGAAGAGTTACTCTAAATTGCTAATAGAAACTAATAGCAGCTTTAGCGGAGAA 180
consensus_6051#0 ------------------------------------------------------------
consensus_6051#2 ------------------------------------------------------------
consensus_6051#1 AGGATTCGATTTCATTACGCAAAAAATATTACGCAAGAAAAACCAACCCGACCGTCATCA 240
consensus_6051#0 ------------------------------------------------------------
consensus_6051#2 ------------------------------------------------------------
consensus_6051#1 CACCCATACACATATACACACTCCTATCCACACGCTGGGTGTTGGTGATGGTGGGGCCGG 300
consensus_6051#0 ------------------------------------------------------------
consensus_6051#2 ------------------------------------------------------------
consensus_6051#1 CGGGGTGTGGTATATTTTGAGATTTTCTTTTGGAAGCAGAAACTAACTAAAACCATCGGT 360
consensus_6051#0 --------------------------CGACCCACGCGTCCGGTTCCCACTTCATCTCGCA 34
consensus_6051#2 --------------------------CCGCCCACGCGTCCGTGT------TCAGATCGCA 28
consensus_6051#1 TATAGAAATTGTATTATAAATTGTGTGCTCCCTTTCCCTCTGTTCCCACTTCATCTCGCA 420
*** * * * *** *****
consensus_6051#0 AGCGGCCACTTGTTGCTGTGTTGCAATTGAAATTACCTGGTGCAAGGAAATGTTACACTC 94
consensus_6051#2 AGCGGCCACTAGTTGCTGTGTTGCAAATTAAATTACCTGGTGCAAGGAAATGTTACACTC 88
consensus_6051#1 AGCGGCCACTTGTTGCTGTGTTGCAATTGAAATTACCTGGTGCAAGGAAATGGTACACTC 480
********** *************** * *********************** *******
consensus_6051#0 GCAATTAAATACTAGTACCGCGTAGACATCCAGGCGAGCAAAGAGATGATTATAGAGGGA 154
consensus_6051#2 GCAATTAAATACTAGTACCACGTACACACTCGAGCGAGCAAAGAGATGATTATAGAGGGA 148
consensus_6051#1 GCAATTAAATACTAGTACCGCGTAGACATCCAGGCGAGCAAAGAGATGATTATAGAGGGA 540
******************* **** *** * ***************************
consensus_6051#0 GGGAGAGAGAGAGA--------------AGAAGCGTTTGGGAGAATAAGTTGCATTTTGA 200
consensus_6051#2 GAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAGCGTTTGGGAGAATAAGTTGCATTTTGA 208
consensus_6051#1 GAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAAGCGTTTGGGAGAATAAGTTGCATTTTGA 600
* ************ ********************************
consensus_6051#0 ATATGAAACAAACAAAACAGGTAGCAATCCTAGTTACAAAATAATAATGAAATGGAAGGA 260
consensus_6051#2 ATATGAAACAAACAAAACAGGTAGCAATCCTAGTTACAAAATAATAATGAAATGGAAGGA 268
consensus_6051#1 ATATGAAACAAACAAAACAGGTAGCAATCCTAGTTACAAAATAATAATGAAATGGAAGGA 660
************************************************************
consensus_6051#0 GATGTAAAACGAAACAATTGTTAGGTGTGGTGTGGTGTACAGTTTGTCCCTCCAAAACTA 320
consensus_6051#2 GATGTAAAACGAAACAATTGTTAGGCGTGGTGTGGTGTACAGTTTGTCCCTCCAAAACTA 328
consensus_6051#1 GATGTAAAACGAAACAATTGTTAGGCGTGGTGTGGTGTACAGTTTGTCCCTCCAAAACTA 720
************************* **********************************
consensus_6051#0 CACACACACAGCATTGAAAGCACATTTAAAAGTGGAAGACAAAAGCAAGCAACGAAGCAG 380
consensus_6051#2 CATACACACAGCATTGAA-GCACATTTAAAAATGGAAGACAAAAGCAAGCAACGAAGCAG 387
consensus_6051#1 CATACACACAGCATTGAA-GCACATTTAAAAATGGAAGACAAAAGCAAGCAACGAAGCAG 779
** *************** ************ ****************************
consensus_6051#0 AAAAGGAAGACAAAATA------TTGGTTATTATTCCTTCTCTCCCCTTTTTTTTACAAA 434
consensus_6051#2 AAAAGGAAGACAAAAGAAGGCAATTGGTTATTATTCCTTTT--CCCCCTTTTTTTACAAA 445
consensus_6051#1 AAAAGGAAGACAAAAGAAGGCAATTGGTTATTATTCCTTTT--CCCCCTTTTTTTACAAA 837
*************** * **************** * **** ************
consensus_6051#0 ATCATTTAAATACTTGACCCTCGAAACAAATCAAATCAATGGGGGCTAACCTGTTATGCA 494
consensus_6051#2 ATCATTTAAATACTTGACCCTCAAATCAAATCAAATCTACGGGGGCTAACCTGTTATGCA 505
consensus_6051#1 ATCATTTAAATACTTGACCCTCAAATCAAATCAAATCTACGGGG---------------- 881
********************** ** *********** * ****
consensus_6051#0 TTCTATCTTACTTCTTAATCTTAATCAATGTAATGGGAGAAATGAAGCAGAAAACACACA 554
consensus_6051#2 TTCTATCTTACTTCTTAATCTTAATCAATGTAATGGGAGAAATGAAGCAGAAAACACACA 565
consensus_6051#1 ------------------------------------------------------------
consensus_6051#0 AAAAACAAGAAGAATTAACCTATGTTCCTTCTATTTCCAGTTTCACCTTGTGTTTCGAAG 614
consensus_6051#2 AAAAACAAGAAGAATTAACCTATGTTCCTTCTATTTCCAGTTTCACCTTGTGTTTCGAAG 625
consensus_6051#1 ------------------------------------------------------------
consensus_6051#0 AAGCAATGTAGTTGAAAAGAATGAAACCCCTTTACACAAATACATATACACACACTGCCG 674
consensus_6051#2 AAGCAATGTAGTTGAAAAGAATGAAACCCCTTTACACAAATACATATACACACA------ 679
consensus_6051#1 ------------------------------------------------------------
consensus_6051#0 AAGTGAAAGAGGAAAATGAAATGAAAATGGAAACAAAAAAAGCAAAAAAAAAGAGATAAA 734
consensus_6051#2 ------------------------------------------------------------
consensus_6051#1 ------------------------------------------------------------
consensus_6051#0 GAAGTGAAAACAGGAAAAACAAATCAACAAAACATAAGAACAACCGAAACAACAGAAACC 794
consensus_6051#2 ------------------------------------------------------------
consensus_6051#1 ------------------------------------------------------------
consensus_6051#0 AAAAAAACCAAAACCGTAAACGAAAACTACCATATTGCAATAGTCTGAATTTAGCAAACG 854
consensus_6051#2 ------------------------------------------------------------
consensus_6051#1 ------------------------------------------------------------
consensus_6051#0 TGTGTTGCGGTATATAGTGTGAATAAAGTCTAGTAAAAAAAACAAATCAATTGAAGCTAA 914
consensus_6051#2 ------------------------------------------------------------
consensus_6051#1 ------------------------------------------------------------
consensus_6051#0 TGCACACAAACACGATGAAGATGACGATGATGATGAAAATAGATAGTGAGAACAACAACA 974
consensus_6051#2 ------------------------------------------------------------
consensus_6051#1 ------------------------------------------------------------
consensus_6051#0 GAAACCGACTCTCGTGCACCACGTGCAACGAGCAGAGACAGCACACAGAGAGAAAGAGAG 1034
consensus_6051#2 ------------------------------------------------------------
consensus_6051#1 ------------------------------------------------------------
consensus_6051#0 GGATTGGAATCTAAGATCCATATTGTAATTGAACTATGTGCATAATAACTACATTACATT 1094
consensus_6051#2 ------------------------------------------------------------
consensus_6051#1 ------------------------------------------------------------
consensus_6051#0 GAAATATGCATCAGAACGGTAATTAGCAAATTAATTAAGCCTCCCAAACAAACCCCCTCC 1154
consensus_6051#2 ------------------------------------------------------------
consensus_6051#1 ------------------------------------------------------------
consensus_6051#0 TCTCCCCATACCGAAAAGCGAATTGTGTACATGCGCAAGGCGGAGCGAAAG 1205
consensus_6051#2 ---------------------------------------------------
consensus_6051#1 ---------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||