|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6058#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1785 fasta sequence
[CCGCCCACGCGTCCGCAACAGCAGCAGCAGCAGCGTAGTATGCAGCCCGAATCGCCCACCCAGACGTACGGTGCGTACAGCCCAACGTTCAGCGACATCGATCAGGTCAGCAGCTTCGCCACCGAGGACAACTCGCCGCTCAATCAGCGCCGGCCACAGAACGGCAACATGTCGCCGATGCCCAACACGAGCCGCAGCTACTACACCGGCGAGCAGGGCCAGACGCAACCGCTGGTCCAGAACGTCGGACTGCCCAACCGCATGGACAGCCGCTCGACGGAGGTGTAAGGAGTATGGTTTAGCATGGTAAAACCACGCCTGGAGACATCTTCCTTGTATCAGTATATGACAGGCACATAGAACACACACATTTACACAAACACAGACATACACACACAGACACACAGATGCCAATGGGTATGTGTTTTGAAAGGGTTTCTTTCTTCCCCACTTCCTCCCAGCACCCATCCCCCCCCCCCCCTAACTAACCATGGCAGGTTTGACAGGTAGAAGTTCGGTTTAGTTGCAAAAGCGCAGCACTAAGAAAATAGCTTAATATATCGGGCAGCAGTGCCCTTGCTAGGAAGAACGCAACCAGTTTCGCAGCAGTTGAAGTGTTAATCTTATCGTGTAAGGAATAGGAGCGCACCGAGAGCCGAGAGAGTACCTCTCAGCAGCAGCACAGAGGAGGCATTCTTGGAGGTCTGCAGAGATAAGATAAGGCACTCGCTAGACCACCTCGAACGGTGTGTGCTCGATTTCAGTGTTTTTTTTTTGTTCGCAATAAGCAGTATTTTAGATATCCTCCATTTTGGACAACACCTCAACAACTCGTACGAGTGTTGTTTTGAGGTCTCATTATATTGACAGACTAATAGCAACTCTTCTCCAAGAAAAAAAAACAAACAAACAAAAGCACAGCAATGGCAATGCCCGGTTTTTGACGATCAAGCGCTGTACCAAGACGTCCTGAAAAACGAGACTTACTGTACCATCTGCACCAATGTTTTGAATTTAGCAGCTTCCCTTCCCCCGGCCTCCTCTATTTCTCGTCTGTCGTATCTACGTATCTTTTCTCGCCCACTCACCCACCTCTGGCGTGTCATTTGCAGGTGAGGAAGAGTACGTGGCACGGAACGCGGGCACCTCGTTCGGTATCGTGCTGGTCATAGTCATCCCGATACTGCTGATCGTCATACTGATCGTGCGCTACAAGATCAAAAGCTGGCAGCGTAGGGCGGGCGAGAAGGCCGGCAATAGTTTCTAGCAGTAGGGCGGACAAACAAATACAGTACCTTCGACAACAACAAACCAGTGCAGTTGCCACATCGATTCACTAAGCTTAGCGTTAGACGAGTCTAGACAATTAAGAATCATCTTTCCCCCGCTCCTTCCGGTAGACTACTTCTCTAGGTCTATAATGTACTTTTTTCTATGTTTATTTTTAAGGGGTTTGTGTTTGAAAATGAAGATAGAGAAAGAGAGAGGGAGTAAACAAAACTCCTTTACGTCGCTTCTTTTAAGTTACATGTAGCGTCAGTGTCAACGCATTTTTTTTTCATCCTTTATTCTGTTTGGTGCATGGACACCGTGAGGCAAGCGAGCACGATAACAAGTAATCGCTGTACCGCTTCATACGCATTGTGAAGCACAGGCACAATGTTAGATATGATTGATATGCAATGACAACAACGGTGCCTCCCTCCGCACACAAACAGTGCAGTTTCAAGAAACGATGAATTCAAAGATAACGATTTGTTTGCTTGGACATATCACAACACAAAA]
[+] EMBL BM635982 [CCGCCCACGCGTCCGCAACAGCAGCAGCAGCAGCGTAGTATGCAGCCCGAATCGCCCACCCAGACGTACGGTGCGTACAGCCCAACGTTCAGCGACATCGATCAGGTCAGCAGCTTCGCCACCGAGGACAACTCGCCGCTCAATCAGCGCCGGCCACAGAACGGCAACATGTCGCCGATGCCCAACACGAGCCGCAGCTACTACACCGGCGAGCAGGGCCAGACGCAACCGCTGGTCCAGAACGTCGGACTGCCCAACCGCATGGACAGCCGCTCGACGGAGGTGTAAGGAGTATGGTTTAGCATGGTAAAACCACGCCTGGAGACATCTTCCTTGTATCAGTATATGACAGGCACATAGAACACACACATTTACACAAACACAGACATACACACACAGACACACAGATGCCAATGGGTATGTGTTTTGAAAGGGTTTCTTTCTTCCCCACTTCCTCCCAGCACCCATCCCCCCCCCCCCCTAACTAACCATGGCAGGTTTGACAGGTAGAAGTTCGGTTTAGTTGCAAAAGCGCAGCACTAAGAAAATAGCTTAATATATCGGGCAGCAGTGCCCTTGCTAGGAAGAACGCAACCAGTTTCGCAGCAGTTGAAGTGTTAATCTTATCGTGTAAGGAATAGGAGCGCAC ]
[-] EMBL BM636811 [ TTGCAAAAGCGCAGCACTAAGAAAATAGCTTAATATATCGGGCAGCAGTGCCCTTGCTAGGAAGAACGTAACCAGTTTCGCAGCAGTTGAAGTGTTAATCTTATCGTGTAAGGAATAGGAGCGCACCGAGAGCCGAGAGAGTACCTCTCAGCAGCAGCACAGAGGAGGCATTCTTGGAGGTCTGCAGAGATAAGATAAGGCACTCGCTAGACCACCTCGAACGGTGTGTGCTCGATTTCAGTGTTTTTTTTTTGTTCGCAATAAGCAGTATTTTAGATATCCTCCATTTTGGACAACACCTCAACAACTCGTACGAGTGTTGTTTTGAGGTCTCATTATATTGACAGACTAATAGCAACTCTTCTCCAAGAAAAAAAAACAAACAAACAAAAGCACAGCAATGGCAATGCCCGGTTTTTGACGATCAAGCGCTGTACCAAGACGTCCTGAAAAACGAGACTTACTGTACCATCTGCACCAATGTTTTGAATTTAGCAGCTTCCCTTCCCCCGG ]
[+] EMBL BM600510 [ ACAAAAGCACAGCAATGGCAATGCCCGGTTTTTGACGATCAAGCGCTGTACCAAGACGTCCTGAAAAACGAGACTTACTGTACCATCTGCACCAATGTTTTGAATTCAGCAGCTTCCCCCCCCCCCCCCTCCTCTATTTCTCGTCTGTCGTATCTACGTATCTTTTCTCGCCCACTCACCCACCTCTGGCGTGTCATTTGCAGGTGAGGAAGAGTACGTGGCACGGAACGCGGGCACCTCGTTCGGTATCGTGCTGGTCATAGTCATCCCGATACTGCTGATCGTCATACTGATCGTGCGCTACAAGATCAAAAGCTGGCAGCGTAGGGCGGGCGAGAAGGCCGGCAATAGTTTCTAGCAGTAGGGCGGACAAACAAATACAGTACCTTCGACAACAACAAACCAGTGCAGTTGCCACATCGATTCACTAAGCTTAGCGTTAGACGAGTCTAGACAATTAAGAATCATCTTTCCCCCGCTCCTTCCGGTAGACTACTTCTCTAGGTCTATAATGTACTTTTTTCTATGTTTATTTTTAAGGGGTTTGTGTTTGAAAATGAAGATAGAGAAAGAGAGAGGGAGTAAACAAAACTCCTTTACGTCGCTTCTTTTAAGTTACATGTAGCGTCAGT ]
[+] EMBL BM575786 [ ccgAGCGTACGGCGGGCGAGAAGGCCGGCAATAGTTTCTAGCAGTAGGGCGGACAAACAAATACAGTACCTTCGACAACAACAAACCAGTGCAGTTGCCACATCGATTCACTAAGCTTAGCGTTAGACGCGTCTAGACAATTAAGGATCATCTTTCCCCCGCTCCTTCCAGTAGACTACTTCTCTAGGTCTATAATGTACTTTTTTCTATGCTTATTTTTAAGGGGTTTGTGTTTGAAAATGAAGATAGAGAAAGAGAGAGGGAGGAAACAAAACTCCTTTACGTCGCTTCTTTTAAGTTACATGTAGCGTCAGTGTCAACGCATTTTTTTTTCATCCTTTATTCTGTTTGGTGCATGGACACCGTGAGGCAAGCGAGCACGATAACAAGTAATCGCTGTACCGCTTCATACGCATTGTGAAGCACAGGCACAATGTTAGATATGATTGATATGCAATGACAACAACGGTGCCTCCCTCCGCACACAAACAGTGCAGTTTCAAGAAACGATGAATTCAAAGATAACGATTTGTTTGCTTGGACATATCACAACACAAAA]
consensusID : consensus_6058#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 637 fasta sequence
[CCCGAGGTTACACACCTCAACAACTCGTACGAGTGTGTTGTGAGGTCTCATTATATTGACAGACTAATAGCAACTCTTCTCCAAAAAAAAAAACAAACAAACAAAAGCACAGCAATGGCAATGCCCGGTTTTTGACGATCAAGCGCTGTACCAAGACGTCCTGAAAAACGAGACTTACTGTACCATCTGCACCAATGTTTTGAATTTAGCAGCTCCCCCCCCCCTCCTCCTCCTCCTCTATTTCTCGTCTGTCGTATCTACGTATCTTTTCTCGCCCACTCACCCACCTCTGGCGTGTCATTTGCAGGTGAGGAAGAGTACGTGGCACGGAACGCGGGCACCTCGTTCGGTATCGTTGGTCATAGTCATCCCGATACTGCTGATCGTCATACTGATCGTGCGCTACAAGATCAAAAGCTGGCAGCGTAGGGCGGGCGAGAAGGCCGGCAATAGTTTCTAGCAGTAGGGCGGACAAACAAATACAGTACCTTCGACAACAACAAACCAGTGCAGTTGCCACATCGATTCACTAAGCTTAGACGATAGACGCGTCTAGACAATTAAGGATCATCTTTCCCCCGCTCCTTCCAGTAGACTACATTCTCTAGGTCTATAATGTACTTTTCTATGTNTATAT]
[+] EMBL AL930283 [CCCGAGGTTACACACCTCAACAACTCGTACGAGTGTGTTGTGAGGTCTCATTATATTGACAGACTAATAGCAACTCTTCTCCAAAAAAAAAAACAAACAAACAAAAGCACAGCAATGGCAATGCCCGGTTTTTGACGATCAAGCGCTGTACCAAGACGTCCTGAAAAACGAGACTTACTGTACCATCTGCACCAATGTTTTGAATTTAGCAGCTCCCCCCCCCCTCCTCCTCCTCCTCTATTTCTCGTCTGTCGTATCTACGTATCTTTTCTCGCCCACTCACCCACCTCTGGCGTGTCATTTGCAGGTGAGGAAGAGTACGTGGCACGGAACGCGGGCACCTCGTTCGGTATCGTTGGTCATAGTCATCCCGATACTGCTGATCGTCATACTGATCGTGCGCTACAAGATCAAAAGCTGGCAGCGTAGGGCGGGCGAGAAGGCCGGCAATAGTTTCTAGCAGTAGGGCGGACAAACAAATACAGTACCTTCGACAACAACAAACCAGTGCAGTTGCCACATCGATTCACTAAGCTTAGACGATAGACGCGTCTAGACAATTAAGGATCATCTTTCCCCCGCTCCTTCCAGTAGACTACATTCTCTAGGTCTATAATGTACTTTTCTATGTNTATAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6058#0 CCGCCCACGCGTCCGCAACAGCAGCAGCAGCAGCGTAGTATGCAGCCCGAATCGCCCACC 60
consensus_6058#1 ------------------------------------------------------------
consensus_6058#0 CAGACGTACGGTGCGTACAGCCCAACGTTCAGCGACATCGATCAGGTCAGCAGCTTCGCC 120
consensus_6058#1 ------------------------------------------------------------
consensus_6058#0 ACCGAGGACAACTCGCCGCTCAATCAGCGCCGGCCACAGAACGGCAACATGTCGCCGATG 180
consensus_6058#1 ------------------------------------------------------------
consensus_6058#0 CCCAACACGAGCCGCAGCTACTACACCGGCGAGCAGGGCCAGACGCAACCGCTGGTCCAG 240
consensus_6058#1 ------------------------------------------------------------
consensus_6058#0 AACGTCGGACTGCCCAACCGCATGGACAGCCGCTCGACGGAGGTGTAAGGAGTATGGTTT 300
consensus_6058#1 ------------------------------------------------------------
consensus_6058#0 AGCATGGTAAAACCACGCCTGGAGACATCTTCCTTGTATCAGTATATGACAGGCACATAG 360
consensus_6058#1 ------------------------------------------------------------
consensus_6058#0 AACACACACATTTACACAAACACAGACATACACACACAGACACACAGATGCCAATGGGTA 420
consensus_6058#1 ------------------------------------------------------------
consensus_6058#0 TGTGTTTTGAAAGGGTTTCTTTCTTCCCCACTTCCTCCCAGCACCCATCCCCCCCCCCCC 480
consensus_6058#1 ------------------------------------------------------------
consensus_6058#0 CTAACTAACCATGGCAGGTTTGACAGGTAGAAGTTCGGTTTAGTTGCAAAAGCGCAGCAC 540
consensus_6058#1 ------------------------------------------------------------
consensus_6058#0 TAAGAAAATAGCTTAATATATCGGGCAGCAGTGCCCTTGCTAGGAAGAACGCAACCAGTT 600
consensus_6058#1 ------------------------------------------------------------
consensus_6058#0 TCGCAGCAGTTGAAGTGTTAATCTTATCGTGTAAGGAATAGGAGCGCACCGAGAGCCGAG 660
consensus_6058#1 ------------------------------------------------------------
consensus_6058#0 AGAGTACCTCTCAGCAGCAGCACAGAGGAGGCATTCTTGGAGGTCTGCAGAGATAAGATA 720
consensus_6058#1 ------------------------------------------------------------
consensus_6058#0 AGGCACTCGCTAGACCACCTCGAACGGTGTGTGCTCGATTTCAGTGTTTTTTTTTTGTTC 780
consensus_6058#1 ------------------------------------------------------------
consensus_6058#0 GCAATAAGCAGTATTTTAGATATCCTCCATTTTGGACAACACCTCAACAACTCGTACGAG 840
consensus_6058#1 ------------------------CCCGAGGTTACACA---CCTCAACAACTCGTACGAG 33
* * * ** *** *******************
consensus_6058#0 TGTTGTTTTGAGGTCTCATTATATTGACAGACTAATAGCAACTCTTCTCCAAGAAAAAAA 900
consensus_6058#1 TGT-GTTGTGAGGTCTCATTATATTGACAGACTAATAGCAACTCTTCTCCAA-AAAAAAA 91
*** *** ******************************************** *******
consensus_6058#0 AACAAACAAACAAAAGCACAGCAATGGCAATGCCCGGTTTTTGACGATCAAGCGCTGTAC 960
consensus_6058#1 AACAAACAAACAAAAGCACAGCAATGGCAATGCCCGGTTTTTGACGATCAAGCGCTGTAC 151
************************************************************
consensus_6058#0 CAAGACGTCCTGAAAAACGAGACTTACTGTACCATCTGCACCAATGTTTTGAATTTAGCA 1020
consensus_6058#1 CAAGACGTCCTGAAAAACGAGACTTACTGTACCATCTGCACCAATGTTTTGAATTTAGCA 211
************************************************************
consensus_6058#0 GCTTCCCTTCCCC----CGGCCTCCTCTATTTCTCGTCTGTCGTATCTACGTATCTTTTC 1076
consensus_6058#1 GCTCCCCCCCCCCTCCTCCTCCTCCTCTATTTCTCGTCTGTCGTATCTACGTATCTTTTC 271
*** *** **** * ****************************************
consensus_6058#0 TCGCCCACTCACCCACCTCTGGCGTGTCATTTGCAGGTGAGGAAGAGTACGTGGCACGGA 1136
consensus_6058#1 TCGCCCACTCACCCACCTCTGGCGTGTCATTTGCAGGTGAGGAAGAGTACGTGGCACGGA 331
************************************************************
consensus_6058#0 ACGCGGGCACCTCGTTCGGTATCGTGCTGGTCATAGTCATCCCGATACTGCTGATCGTCA 1196
consensus_6058#1 ACGCGGGCACCTCGTTCGGTATCGT--TGGTCATAGTCATCCCGATACTGCTGATCGTCA 389
************************* *********************************
consensus_6058#0 TACTGATCGTGCGCTACAAGATCAAAAGCTGGCAGCGTAGGGCGGGCGAGAAGGCCGGCA 1256
consensus_6058#1 TACTGATCGTGCGCTACAAGATCAAAAGCTGGCAGCGTAGGGCGGGCGAGAAGGCCGGCA 449
************************************************************
consensus_6058#0 ATAGTTTCTAGCAGTAGGGCGGACAAACAAATACAGTACCTTCGACAACAACAAACCAGT 1316
consensus_6058#1 ATAGTTTCTAGCAGTAGGGCGGACAAACAAATACAGTACCTTCGACAACAACAAACCAGT 509
************************************************************
consensus_6058#0 GCAGTTGCCACATCGATTCACTAAGCTTAG-CGTTAGACGAGTCTAGACAATTAAGAATC 1375
consensus_6058#1 GCAGTTGCCACATCGATTCACTAAGCTTAGACGATAGACGCGTCTAGACAATTAAGGATC 569
****************************** ** ****** *************** ***
consensus_6058#0 ATCTTTCCCCCGCTCCTTCCGGTAGACTAC-TTCTCTAGGTCTATAATGTACTTTTTTCT 1434
consensus_6058#1 ATCTTTCCCCCGCTCCTTCCAGTAGACTACATTCTCTAGGTCTATAATGTACTTTTCTAT 629
******************** ********* ************************* * *
consensus_6058#0 ATGTTTATTTTTAAGGGGTTTGTGTTTGAAAATGAAGATAGAGAAAGAGAGAGGGAGTAA 1494
consensus_6058#1 GTNTATAT---------------------------------------------------- 637
* * ***
consensus_6058#0 ACAAAACTCCTTTACGTCGCTTCTTTTAAGTTACATGTAGCGTCAGTGTCAACGCATTTT 1554
consensus_6058#1 ------------------------------------------------------------
consensus_6058#0 TTTTTCATCCTTTATTCTGTTTGGTGCATGGACACCGTGAGGCAAGCGAGCACGATAACA 1614
consensus_6058#1 ------------------------------------------------------------
consensus_6058#0 AGTAATCGCTGTACCGCTTCATACGCATTGTGAAGCACAGGCACAATGTTAGATATGATT 1674
consensus_6058#1 ------------------------------------------------------------
consensus_6058#0 GATATGCAATGACAACAACGGTGCCTCCCTCCGCACACAAACAGTGCAGTTTCAAGAAAC 1734
consensus_6058#1 ------------------------------------------------------------
consensus_6058#0 GATGAATTCAAAGATAACGATTTGTTTGCTTGGACATATCACAACACAAAA 1785
consensus_6058#1 ---------------------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||