These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6062#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 986 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGTTTTCTCAATTGTGCACTATGTTAGTAAATTATTTGCACTTCCATTCCACCCGTTCCAACTGCTTCTCTCCACTACTTTGCACACCCATTGTTAGGGCGAAGTAGTAGTAATGAGCGGAAAAACAACAACAATATTCACTTCATAATAATCAGACAGAGAGAGAAAAGAGAGCAGGAGAGAGAGAGAGACAAAGAAACGTCTCGTATAGTGTTAAAACAACCACCAGAATCAGTATTTCAGTATAGTAATTGTGCGTTTATTAGTCTCCCACACGACGTGTGCGCAGCAGAGCTAGGAAGCGTAAACACTTAATCCTTCTTAGCCAAACCGATCCAACCGAATCGAAACCAACCCAACAACTCCCCCACTCTCTCTATGTGTTGTCCTAGAACAAATTGTATTTGTTTGTTTAGTAGTGTTAGAAGCTTTTTAAGAATGGTGTTACTAGCACTCCAACACTAGGATATACCAGCTGGTAGGCGTATTTATTACACTAGCAATTATTGCAAATAGATTTTACACACAAATAAGCTAATCAGAATCAACACACACACACACACAGTTACTGGGGGGTCGTGTGAGGCAAATTGTACAGAAGATGGTAGCGCTGGTAAAAAGGCTCACCGTATTTAGTTACATTTAGTTTACGTTTGTAAGGCCCTCCCTAGCAGATTGTAGATACATTGTGTGTGTTTTTTGGCAGTTTAGTTTAGTTAATGTTTAATTGTTGCTTTCCGGTCACAATTTCTGGCCGCGGAAGAGTTCGCAGAGTAGTCGCGGAGAGGGGGGAGGAAAATACAGCGGAAAAATATAAACACTT-TATGGATGCACTGAAATGAAGGTTAGAGAAAAATGCAAAAATCAAACAGGTAAATGCAAAGTGCAAAAGCAGCTAGAAAAGGAAAAAAATGAAGGAAAAAATCTAATTA-GGAATGGTCCTTTCATGTTGACAAAAAA] [+] EMBL BM613908 [CCGCCCACGCGTCCGCCCACGCGTCCGGTTTTCTCAATTGTGCACTATGTTAGTAAATTATTTGCACTTCCATTCCACCCGTTCCAACTGCTTCTCTCCACTACTTTGCACACCCATTGTTAGGGCGAAGTAGTAGTAATGAGCGGAAAAACAACAACAATATTCACTTCATAATAATCAGACAGAGAGAGAAAAGAGAGCAGGAGAGAGAGAGAGACAAAGAAACGTCTCGTATAGTGTTAAAACAACCACCAGAATCAGTATTTCAGTATAGTAATTGTGCGTTTATTAGTCTCCCACACGACGTGTGCGCAGCAGAGCTAGGAAGCGTAAACACTTAATCCTTCTTAGCCAAACCGATCCAACCGAATCGAAACCAACCCAACAACTCCCCCACTCTCTCTATGTGTTGTCCTAGAACAAATTGTATTTGTTTGTTTAGTAGTGTTAGAAGCTTTTTAAGAATGGTGTTACTAGCACTCCAACACTAGGATATACCAGCTGGTAGGCGTATTTATTACACTAGCAATTATTGCAAATAGATTTTACACACAAATAAGCTAATCAGAATCAACACACACACACACACAGTTACTGGGGGGTCGTGTGAGGCAAATTGTACAGAAGATGGTAGCGCTGGTAAAAAGGCTCACCGTATT ] [+] EMBL BM626180 [ ccgATTAGTCTCCCACACGACGTGTGCGCAGCAGAGCTAGGAAGCGTAAACACTTAATCCTTCTTAGCCAAACCGATCCAACCGAATCGAAACCAACCCAACAACTCCCCCACTCTCTCTATGTGTTGTCCTAGAACAAATTGTATTTGTTTGTTTAGTAGTGTTAGAAGCTTTTTAAGAATGGTGTTACTAGCACTCCAACACTAGGATATACCAGCTGGTAGGCGTATTTATTACACTAGCAATTATTGCAAATAGATTTTACACACAAATAAGCTAATCAGAATCAACACACACACACACACAGTTACT GTGGGTCGTGTGAGGCAAATTGTACAGAAGATGGTAGCGCTGGTAAAAAGGCTCACCGTATTTAGTTACATTTAGTTTACGTTTGTAAGGCCCTCCCTAGCAGATTGTAGATACATTGTGTGTGTTTTTTGGCAGTTTAGTTTAGTTAATGTTTTATTGTTGCTTTCCGGTCACAATTTCTGGCCGCGGAAGAGTTCGCAGAGTAGTCGCGGAGAGGGGGGTGGAAAATACAGCGGAAAAATATAAACACTT TGTGGATGCACTGAAATGAAGGTTAGAGAAAAATTCAAAAATCAAACAGGTAAATGTAAAGTGCAAAAGCAGCTAGAAAAGGAAAAAAATGAAGGAAAAAATCTAATTAGGGAATGGCCCTTT ] [+] EMBL AGA283815 [ TTTTGGCAGTTTAGTTTAGATAATGTTTAATTGTTGCCTTCCGGCCACAACTTCTGGCCGCGGAAGAGTTCGCAGAGTAGTCGCGGAGAGGGGGGAGGAAAATACAGCGGAAAAATATAAACACTTATATGGATGCACTGAAATGAAGGTTAGAGAAAAATGCAAAAATCAAACAGGTAAATGCAAAGTGCAAAAGCAGCTAGAAAAGGAAAAAAATGAAGGAAAAAATCTAATTA GGAATGGTCCTTTCATGTTGACAAAAAA] [-] EMBL AGA285105 [ TTTTGGCAGTTTAGTTTAGTTAATGTTTAATTGTTGCTTTCCGGTCACAATTTCTGGCCGCGGAAGAGTTCGCAGAGTAGTCGCGGAGAGGGGGGAGGAAAATACAGCGGAAAAATATAAACACTTATATGGATGCACTGAAATGAAGGTTAGAGAAAAATGCAAAAATCAAACAGGTAAATGCAAAGTGCAAAAGCAGCTAGAAAAGGAAAAAAATGAAGGAAAAAATCTAATTA GGAATGGTCCTTTCATGT ] consensusID : consensus_6062#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 619 fasta sequence [GCCACAGTGTAGCGAGTGGTAGTGTCCCTCCTTTTCCCCCTATGTAGCCCCTATTTAGCAATGTGTTGTTTTTTTGTTTGGTTGTGTGTGCTTGTTTGTTAGGCTATTTTTTATGTAGAAAAAAAGGTGGTGCACCTATTTTTAGGGTAAATTCCCCTGGGGAGGCACAATAGCTAATAGAAAAGGTAGAGAGAGAGAGAGAGATAGTAAGGGAGGATCCTGTCGAATGATACACACAAATCGGTCACCGTTTTTTCGGTGTTCGTTTTATAGCCCTTCCGATATCTTTACACAAACACACACACACACATACTTTAAACACTCGGGCAGTTTTCTCAATTTGCACTATGTTAGTAAATTATTTGCACTTCCATTCCACCCGTTCCCACTGCTTCTATCCACTACTTTGCACACCCATTGTTAGGGCGAAGTAGTAGTAATGAGCGGAAAAACAACAACAATATTCACATCATAATAATCAGACAGAGAGAGAGAGAGAAAGGAGAGCAGGAGAGAGAGACAAAGAAACGTCTCGTATAGTGTTAAAACAACCACCAGAATCAGTATTTCAGTATAGTAATTGTGCGTTTATTAGTCTCCCACACGACGTGTGCGCAGC] [+] EMBL BX612584 [GCCACAGTGTAGCGAGTGGTAGTGTCCCTCCTTTTCCCCCTATGTAGCCCCTATTTAGCAATGTGTTGTTTTTTTGTTTGGTTGTGTGTGCTTGTTTGTTAGGCTATTTTTTATGTAGAAAAAAAGGTGGTGCACCTATTTTTAGGGTAAATTCCCCTGGGGAGGCACAATAGCTAATAGAAAAGGTAGAGAGAGAGAGAGAGATAGTAAGGGAGGATCCTGTCGAATGATACACACAAATCGGTCACCGTTTTTTCGGTGTTCGTTTTATAGCCCTTCCGATATCTTTACACAAACACACACACACACATACTTTAAACACTCGGGCAGTTTTCTCAATTTGCACTATGTTAGTAAATTATTTGCACTTCCATTCCACCCGTTCCCACTGCTTCTATCCACTACTTTGCACACCCATTGTTAGGGCGAAGTAGTAGTAATGAGCGGAAAAACAACAACAATATTCACATCATAATAATCAGACAGAGAGAGAGAGAGAAAGGAGAGCAGGAGAGAGAGACAAAGAAACGTCTCGTATAGTGTTAAAACAACCACCAGAATCAGTATTTCAGTATAGTAATTGTGCGTTTATTAGTCTCCCACACGACGTGTGCGCAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6062#0 CCGCCCACGCGTCCGCCCACGCGTCCGGTTTTCTCAATTGTGCACTATGTTAGTAAATTA 60 consensus_6062#1 ------------------------------------------------------------ consensus_6062#0 TTTGCACTTCCATTCCACCCGTTCCAACTGCTTCTCTCCACTACTTTGCACACCCATTGT 120 consensus_6062#1 ------------------------------------------------------------ consensus_6062#0 TAGGGCGAAGTAGTAGTAATGAGCGGAAAAACAACAACAATATTCACTTCATAATAATCA 180 consensus_6062#1 ------------------------------------------------------------ consensus_6062#0 GACAGAGAGAGAAAAGAGAGCAGGAGAGAGAGAGAGACAAAGAAACGTCTCGTATAGTGT 240 consensus_6062#1 ------------------------------------------------------------ consensus_6062#0 TAAAACAACCACCAGAATCAGTATTTCAGTATAGTAATTGTGCGTTTATTAGTCTCCCAC 300 consensus_6062#1 ------------------------------------------------------------ consensus_6062#0 ACGACGTGTGCGCAGCAGAGCTAGGAAGCGTAAACACTTAATCCTTCTTAGCCAAACCGA 360 consensus_6062#1 ------------------------------------------------------------ consensus_6062#0 TCCAACCGAATCGAAACCAACC-CAACAACTCCCCCACTCTCTCTATGTGTTGTCC-TAG 418 consensus_6062#1 ----GCCACAGTGTAGCGAGTGGTAGTGTCCCTCCTTTTCCCCCTATGTAGCCCCTATTT 56 ** * * * * * * * * ** ** * ****** * * consensus_6062#0 AACAAATTGT-ATTTGTTTGTTTAGTAGTGTTAGAAGCTTTTTAAGAATGGTGTTACTAG 477 consensus_6062#1 AGCAATGTGTTGTTTTTTTGTTTGGTTGTGT---GTGCTTGTTTGTTAGGCTATTTTTTA 113 * *** *** *** ******* ** **** **** ** * * * ** * consensus_6062#0 CACTCCAACACTAGGATATACCAGCTGGTAGGCGTATTTATTACACTAGCAATTATTGCA 537 consensus_6062#1 TG---------TAGAAAAAA--AGGTGGTGCACCTATTT-TTAGGGTA--AATTCCCCTG 159 *** * * * ** **** * ***** *** ** **** consensus_6062#0 AATAGATTTTACACACAAATAAGCTAATCAGAATCAACACACACACACACACAGTTACTG 597 consensus_6062#1 GGGAGGCACAATA-GCTAATAGAAAAGGTAGAG-----AGAGAGAGAGAGATAGTAAG-G 212 ** * * * **** * *** * * * * * * * *** * * consensus_6062#0 GGGGGTCGTGTGAGGCAAATTGTACAGAAGATGGTAGCGCTGGTAAAAAGGCTCACCGTA 657 consensus_6062#1 GAGGATCCTGTCGAATGA--TACACACAAATCGGTCACCGTTTTTTCGGTGTTCGTTTTA 270 * ** ** *** * * *** ** *** * * * * ** ** consensus_6062#0 TT-TAGTTACATTTAGTTTACGTTTGTAAGGCCCTCCCTAGCAGATTGTAGATACATTGT 716 consensus_6062#1 TAGCCCTTCCGATATCTTTACACA---AACACACACACACACATACTTTAAACACTCGGG 327 * ** * * ***** ** * * * * ** * * ** * ** * consensus_6062#0 GTGTGTTTTTTGGCAGT-TTAGTTTAGTTAATGTTTAATTGTTGCTTTCCGGTCACAATT 775 consensus_6062#1 CAGTTTTCTCAATTTGCACTATGTTAGTAAATTATTTGCACTTCCATTCCACCCGTTCCC 387 ** ** * * ** ***** *** ** ** * **** * consensus_6062#0 TCTGG--CCGCGGAAGAGTTCGCAGAGTAGTCGCGGAGAGGGGGGAGGAAAATACAGCGG 833 consensus_6062#1 ACTGCTTCTATCCACTACTTTGCACACCCATTGTTAGGGCGAAGTAGTAGTAATGAGCGG 447 *** * * * ** *** * * * * * * ** * * ***** consensus_6062#0 AAAAATATAAACACTTTATGGATGCACTGAAATGAAGGTTAGAGAAAAATGCAAAAATCA 893 consensus_6062#1 AAAAACAACAACAATATTCACAT-CATAATAATCAGACAGAGAGAGAGA-GAGAAAGGAG 505 ***** * **** * * ** ** *** * ***** * * * *** consensus_6062#0 AACAGGTAAATGCAAAGTGCAAAAGCAGCTAGAAAAGGAAAAAAATGAAGGAAAAAATC- 952 consensus_6062#1 AGCAGGAGA--GAGAGACAAAGAAACGTCTCGTATAGTGTTAAAACAACCACCAGAATCA 563 * **** * * * * ** * ** * * ** **** * * **** consensus_6062#0 -TAATTAGGAATGGTCCTTTCATGTTGACAAAAAA--------------------- 986 consensus_6062#1 GTATTTCAGTATAGTAATTGTGCGTTTATTAGTCTCCCACACGACGTGTGCGCAGC 619 ** ** * ** ** ** *** * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||