|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6066#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 995 fasta sequence
[TTTTCTTACATTATTTCTTTTGCTTTGCTCAAGGCTTTGAAACTTGATATTTACTTTTTTTTCTCACTCCGAGCTTAGTTCTGTTAATTTCTTACTGCCTTTTGCATATCCGTGCGCTGACTTTGTTTTTGCTATTGCGTTGCGTAAAATAAGTTGAATTATATTTGAAATGAAATGAAAATCGTATGTGAATTCTGCTTTTTTTAAATCGAAATCAGTGATCCCAATTGGAGGAATAGGAGCGTGAGACCCTACTGGAAAATTGAAGAGATCCACCGAAAGGTTGTGTTTCTATGGATGAGTTTCTTATTGGAAAAAAATGGGTGAAGCAGTAGAAAGGGTTACTCTTCCTTCATTTCACTAGCTTGCGTTGTTTGCGGTTGAACTTTGGAAAATTGTTGCAAAAACATCAGAAAGAGCATGCGATAGCTGACAGCAGGTGTAAGACAAGATGAAAAATCAATTACATTTCATCCCAACCTA-AAATAG-AG-CGAATAT-TTGCGATATCGAA-CCAGCCG-CTTCAGCAGCAGCT-GACTTAAGCA-AACT-AAGCGAGAAACTATTTTCTCTGCTACATAAACCTGCTCTCGGAGGTTCTCCTACCGTGTATCGGTCGGTCGGGTGCAGTG-CATAG-AAGGAAGAGACGAGGCGA-CACGAACAAAAC-AAAGCAAAAAAGCAACTAATAT-CTACGAAACAAAACTACAATATTACACAGAAACACACACATATATACATATATTTGCGGCTAGTTAAGAGGCGATGTGGGAGCCTTAACGCGTGGAAGGGCCCGGAAGAAAAACCCACGATGATGAATTACTATTACGCATGGATGATAATGATGATGATGATGATGATTGGACTAAACGAACAAACTCT-CGATATATGACGATGCTGATGATGATGATAATGAAGATGAAAC-ATGAAAAATGAATGATGAAATAAACCCGTATTCACATGATCGTGT-GAACGGATGGAAAAATTAAAAAAAGGGCAGCATG]
[+] EMBL AGA285101 [TTTTCTTACATTATTTCTTTTGCTTTGCTCAAGGCTTTGAAACTTGATATTTACTTTTTTTTCTCACTCCGAGCTTAGTTCTGTTAATTTCTTACTGCCTTTTGCATATCCGTGCGCTGACTTTGTTTTTGCTATTGCGTTGCGTAAAATAAGTTGAATTATATTTGAAATGAAATGAAAATCGTATGTGAATTCTGCTTTTTTTAAATCGAAATCAGTGATCCCAATTGGAGGAATAGGAGCGTGAGACCCTACTGGAAAATTGAAGAGATCCACCGAAAGGTTGTGTTTCTATGGATGAGTTTCTTATTGGAAAAAAATGGGTGAAGCAGTAGAAAGGGTTACTCTTCCTTCATTTCACTAGCTTGCGTTGTTTGCGGTTGAACTTTGGAAAATTGTTGCAAAAACATCAGAAAGAGCATGCGATAGCTGACAGCAGGTGTAAGACAAGATGAAAAATCAATTACATTTCATCCCAACCTA AAATAG AA CGAATAT TT ]
[+] EMBL BX627374 [ TCCCAATTGGAGGAATAGGAGCGTGAGACCCTACTGGAAAATTGAAGAGATCCACCGAAAGGTTGTGTTTCTATGGATGAGTTTCTTATTGGAAAAAAATGGGTGAAGCAGTAGAAAGGGTTACTCTTCCTTCATTTCACTAGCTTGCGTTGTTTGCGGTTGAACTTTGGAAAATTGTTGCAAAAACATCAGAAAGAGCATGCGATAGCTGACAGCAGGTGTAAGACAAGATGAAAAATCAATTACATTTCATCCCAACCTA AAATAG AG CGAATAT TTGCGATATCGAA CCAGCCG CTTCAGCAGCAGCT GACTTAAGCA AACT AAGCGAGAAACTATTTTCTCTGCTACATAAACCTGCTCTCGGAGGTTCTCCTACCGTGTATCGGTCGGTCGGGTGCAGTG CATAG AAGGAAGAGACGAGGCGA CACGAACAAAAC AAAGCAAAAAAGCAACTAATAT CTACGAAACAAAACTACAATATTACACAGAAACACACACATATATACATATATTTGCGGCTAGTTAAGAGGCGATGTGGGAGCCTTAACGCGTGGAAGGGCCCGGAAGAAAAACCCACGATGATGAATTACTATTACGCATGGATGATAATGATGATGATGATGATGATTGGACTAAACGAACAAACTCT CGATATATGACGATGCTGATGATGATGATAATGAAGATGAAAC ATGAAAAATGAATGATGAAATAAACCCGTATTCACATGATCGTGT GAACG ]
[-] EMBL BX466810 [ atcCAATTACATTTCATCCCAACCTATAAANAGCAGCCGAATATGTTGCGATATCGAATCCAGCCGTCTTCAGCAGCAGCTGGACTTAAGCATAACTCAAGCGAGNAACTATTTTCTCTGCTACATAAACCTGCTCTCGGAGGTTCTCCTACCGTGTATCGGTCGGTCGGGTGCAGTGTCATAGCAAGGAAGAGACGAGGCGAGCACGGACCAAACGATAGCAAAAAAGCAACTAATATCCTACGAAACATAACTACAATATTACACAGAAACACACACATATATACATATATTTGCGGCTAGTTAAGAGGCGATGTGGGAGCCTTAACGCGTGGAAGGGCCCGGAAG AAAACCCACGATGATGAATTACTATTACGCATGGATGATAATGATGATGATGATGATGATTGGACTAAACGGACNNACTCTGCGATATATGACGATGCTGATGATGATGATAATGAAGATGAAACTATGGAAAATGAATGATGGAATAAACCCGTATTCACATGATCGTGTGGAAC GATGGAAAAATTAAAAAAAGGGCAGCATG]
[-] EMBL AGA283810 [ CTATTTTCTCTGCAACATAAACCTGCTCTCGGAGGTTCTCCTACCGTGTATCGGTCGGTCGGGTGCAGTG CATAG AAGGAAGAGACGAGGCGA CACGAACAAAAC AAAGCAAAAAAGCAACTAATAT CTACGAAACAAAACTACAATATTACACAGAAACACACACATATATACATATATTTGCGGCTAGTTAAGAGGCGATGTGGGAGCCTTAACGCGTGGAAGGGCCCGGAAGAAAAACCCACGATGATGAATTACTATTACGCATGGATGATAATGATGATGATGATGATGATTGGACTAAACGAACAAACTCT CGATATATGACGATGCTGATGATGATGATAATGAAGATGAAAC ATGAAAAATGAATGATGAAATAAACCCGTATTCACATGATCGTGT GAAACGATGAAATAAaa ]
consensusID : consensus_6066#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 198 fasta sequence
[CAGCGTATTTCTAACACACACTCTTTAGTTTGTTGTTTTATCTAGCTTTTCTTACTTTATTTCTTTGCTTGCTCAAGGCTTTGAAACTTGATATTTACTTTTTTTTCTCACTCCGAGCTTAGTTCTGTTAATTTCTTACTGCCTTTTGCATATCCGTGCGCTCACGAGGGACTTGTTTTTGCTATTGCGTTGCGTAAA]
[+] EMBL AL930703 [CAGCGTATTTCTAACACACACTCTTTAGTTTGTTGTTTTATCTAGCTTTTCTTACTTTATTTCTTTGCTTGCTCAAGGCTTTGAAACTTGATATTTACTTTTTTTTCTCACTCCGAGCTTAGTTCTGTTAATTTCTTACTGCCTTTTGCATATCCGTGCGCTCACGAGGGACTTGTTTTTGCTATTGCGTTGCGTAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6066#0 ----------------------------------------------TTTTCTTACATTAT 14
consensus_6066#1 CAGCGTATTTCTAACACACACTCTTTAGTTTGTTGTTTTATCTAGCTTTTCTTACTTTAT 60
********* ****
consensus_6066#0 TTCTTTTGCTTTGCTCAAGGCTTTGAAACTTGATATTTACTTTTTTTTCTCACTCCGAGC 74
consensus_6066#1 TTCTTTG--CTTGCTCAAGGCTTTGAAACTTGATATTTACTTTTTTTTCTCACTCCGAGC 118
****** **************************************************
consensus_6066#0 TTAGTTCTGTTAATTTCTTACTGCCTTTTGCATATCCGTGCGCTGAC------TTTGTTT 128
consensus_6066#1 TTAGTTCTGTTAATTTCTTACTGCCTTTTGCATATCCGTGCGCTCACGAGGGACTTGTTT 178
******************************************** ** ******
consensus_6066#0 TTGCTATTGCGTTGCGTAAAATAAGTTGAATTATATTTGAAATGAAATGAAAATCGTATG 188
consensus_6066#1 TTGCTATTGCGTTGCGTAAA---------------------------------------- 198
********************
consensus_6066#0 TGAATTCTGCTTTTTTTAAATCGAAATCAGTGATCCCAATTGGAGGAATAGGAGCGTGAG 248
consensus_6066#1 ------------------------------------------------------------
consensus_6066#0 ACCCTACTGGAAAATTGAAGAGATCCACCGAAAGGTTGTGTTTCTATGGATGAGTTTCTT 308
consensus_6066#1 ------------------------------------------------------------
consensus_6066#0 ATTGGAAAAAAATGGGTGAAGCAGTAGAAAGGGTTACTCTTCCTTCATTTCACTAGCTTG 368
consensus_6066#1 ------------------------------------------------------------
consensus_6066#0 CGTTGTTTGCGGTTGAACTTTGGAAAATTGTTGCAAAAACATCAGAAAGAGCATGCGATA 428
consensus_6066#1 ------------------------------------------------------------
consensus_6066#0 GCTGACAGCAGGTGTAAGACAAGATGAAAAATCAATTACATTTCATCCCAACCTAAAATA 488
consensus_6066#1 ------------------------------------------------------------
consensus_6066#0 GAGCGAATATTTGCGATATCGAACCAGCCGCTTCAGCAGCAGCTGACTTAAGCAAACTAA 548
consensus_6066#1 ------------------------------------------------------------
consensus_6066#0 GCGAGAAACTATTTTCTCTGCTACATAAACCTGCTCTCGGAGGTTCTCCTACCGTGTATC 608
consensus_6066#1 ------------------------------------------------------------
consensus_6066#0 GGTCGGTCGGGTGCAGTGCATAGAAGGAAGAGACGAGGCGACACGAACAAAACAAAGCAA 668
consensus_6066#1 ------------------------------------------------------------
consensus_6066#0 AAAAGCAACTAATATCTACGAAACAAAACTACAATATTACACAGAAACACACACATATAT 728
consensus_6066#1 ------------------------------------------------------------
consensus_6066#0 ACATATATTTGCGGCTAGTTAAGAGGCGATGTGGGAGCCTTAACGCGTGGAAGGGCCCGG 788
consensus_6066#1 ------------------------------------------------------------
consensus_6066#0 AAGAAAAACCCACGATGATGAATTACTATTACGCATGGATGATAATGATGATGATGATGA 848
consensus_6066#1 ------------------------------------------------------------
consensus_6066#0 TGATTGGACTAAACGAACAAACTCTCGATATATGACGATGCTGATGATGATGATAATGAA 908
consensus_6066#1 ------------------------------------------------------------
consensus_6066#0 GATGAAACATGAAAAATGAATGATGAAATAAACCCGTATTCACATGATCGTGTGAACGGA 968
consensus_6066#1 ------------------------------------------------------------
consensus_6066#0 TGGAAAAATTAAAAAAAGGGCAGCATG 995
consensus_6066#1 ---------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||