These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6068#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 742 fasta sequence [GCAGAATNGCCCGAGGTTATTCACTGTGAGCTTGAAGACCGTGGCACGCGCGACTGTTACGCAGTCGGGCACGCCAGCGTTTGGGACAAATTTAGCTGTTCGCCTGAAGTGCTGCCTCCGTGAACCTTCGTCGAACTATATACCTGCGGAACAGATATCGACGTGAGCTCTTGTCTTGTGTGCAAAGGAAAGTGTGTCAGTTGCTCGGGTGCGGTGTAGTGCAGCAGCACGGTTCACGGTTCCGGTTTGATAGTTGCCAAAGTGTGTGCCTTTGATAACAGGTTAGCTNTCGTGTNGGAACGTTTCCAGCCTGCAAGTGTGACTACAGTGTTGTGGCATTCGAAGCGACCATATTCTTCTATAAACGAGATGTGACGGAATCTGCCGTCTCGCTAGCCTTCGAGAACGACGACTCCCCAAACCTTCCCCTTCCAGAAAAGCACTGCAATGTCGTCGTCCGGTGCGACCAAGAGCAAGCCGAAGAAGAACAGCAATCTGCGCATACTGTGGATACCGGGGCGCAAAAAGCACAACCGCAAGGGTTCGTACAGCACGACGAAGAATGGGCTGCCGCAGACGTACGGGATGCAGCCGCGCAAGAACGAATCGTGGACGCTTGGCGGCGCGATGAATCATAGCAAAATTATAAATGCAGATCTGCACGAGAACAACCTGGACGTGGCGAGCATCGTGACGACGGCGGCCACTGGCAGCGCGATGGCCGCGATGGTCAAAGCCAACG] [+] EMBL AL930279 [GCAGAATNGCCCGAGGTTATTCACTGTGAGCTTGAAGACCGTGGCACGCGCGACTGTTACGCAGTCGGGCACGCCAGCGTTTGGGACAAATTTAGCTGTTCGCCTGAAGTGCTGCCTCCGTGAACCTTCGTCGAACTATATACCTGCGGAACAGATATCGACGTGAGCTCTTGTCTTGTGTGCAAAGGAAAGTGTGTCAGTTGCTCGGGTGCGGTGTAGTGCAGCAGCACGGTTCACGGTTCCGGTTTGATAGTTGCCAAAGTGTGTGCCTTTGATAACAGGTTAGCTNTCGTGTNGGAACGTTTCCAGCCTGCAAGTGTGACTACAGTGTTGTGGCATTCGAAGCGACCATATTCTTCTATAAACGAGATGTGACGGAATCTGCCGTCTCGCTAGCCTTCGAGAACGACGACTCCCCAAACCTTCCCCTTCCAGAAAAGCACTGCAATGTCGTCGTCCGGTGCGACCAAGAGCAAGCCGAAGAAGAACAGCAATCTGCGCATAC ] [+] EMBL CNS08P9P [ GGTTTGAAAGTGGCCAAAGTGTGTGCCTTTGATAACAGGTTAGCT TCGTGTTGGAACGTTTCCAGCCTGCAAGTGTGACTACAGTGTTGTGGCATTCGAAGCGACCATATTCTTCTATAAACGAGATGTGACGGAATCTGCCGTCTCGCTAGCCTTCGAGAACGACGACTCCCCAAACCTTCCCCTTCCAGAAAAGCACTGCAATGTCGTCGTCCGGTGCGACCAAGAGCAAGCCGAAGAAGACCAGCAATCTGCGCATACTGTGGATACCGGGGCGCAAAAAGCACAACCGCAAGGGTTCGTACAGCACGACGAAGAATGGGCTGCCGCAGACGTACGGGATGCAGCCGCGCAAGAACGAATCGTGGACGCTTGGCGGCGCGATGAATCATAGCAAAATTATAAATGCAGATCTGCACGAGAACAACCTGGACGTGGCGAGCATCGTGACGACGGCGGCCACTGGCAGCGCGATGGCCGCGATGGTCAAAGCCAACG] consensusID : consensus_6068#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence [CCGCGGATTCAATCGTTCGCAATTGTTACATTGCTCGTGTGAAGCCTTTTTTTGGTTTGTTTGGAAGCCGTTAAAGATGGAACTGGTCATTGTACCTTGCTATCGGTTTGGGTCAAAATCTAGCATCGGATTGCCAAGGTCTGTGTGTGTGTGTGTGTGGCGGTGAAGCATCCAAATCGAAACAGACCGCGTGCGTGCGAGTTTTCGCGTGTCGTCCCGCTTCTTTACGCGCGACCCTACAGTTCCGACGATTGTTGTAGCAATTTCTTTTTCAGAGATCTGCACGAGAACAACCTGGACGTGGCGAGCATCGTGACGACGGCGGCCACTGGCAGCGCGATGGCCGCGATGGTCAAAGCCAACGAACCGCCGACCGTTGAAGGGCAGCAGCAGCTTGATCAGCAGCTATCGAACGAACCCTGCCCATCGACCAGTACCGGTAAGGGAGGGCAGCAGCAGGCCGGCACGCCGCAGATAGTGGTGGGCACGATAGAGCTGAACAATTTAAATGGGGACATTGCCAACCACAAGGAAAAGGAGATCGGCACGAGCAACCAGTTCGAGACGCTCACCCTGATCGACGAGGACGACGAGGAGGAACAGGATCGGAACTGCTCGAACGCACATTCCTCCT] [+] EMBL BM586789 [CCGCGGATTCAATCGTTCGCAATTGTTACATTGCTCGTGTGAAGCCTTTTTTTGGTTTGTTTGGAAGCCGTTAAAGATGGAACTGGTCATTGTACCTTGCTATCGGTTTGGGTCAAAATCTAGCATCGGATTGCCAAGGTCTGTGTGTGTGTGTGTGTGGCGGTGAAGCATCCAAATCGAAACAGACCGCGTGCGTGCGAGTTTTCGCGTGTCGTCCCGCTTCTTTACGCGCGACCCTACAGTTCCGACGATTGTTGTAGCAATTTCTTTTTCAGAGATCTGCACGAGAACAACCTGGACGTGGCGAGCATCGTGACGACGGCGGCCACTGGCAGCGCGATGGCCGCGATGGTCAAAGCCAACGAACCGCCGACCGTTGAAGGGCAGCAGCAGCTTGATCAGCAGCTATCGAACGAACCCTGCCCATCGACCAGTACCGGTAAGGGAGGGCAGCAGCAGGCCGGCACGCCGCAGATAGTGGTGGGCACGATAGAGCTGAACAATTTAAATGGGGACATTGCCAACCACAAGGAAAAGGAGATCGGCACGAGCAACCAGTTCGAGACGCTCACCCTGATCGACGAGGACGACGAGGAGGAACAGGATCGGAACTGCTCGAACGCACATTCCTCCT] consensusID : consensus_6068#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 564 fasta sequence [CCGGCGAGTTGATCGATGGCGTCCGCGAGTCGTGTGCTGCTGCTGCCGTTGCTGCCGTTACGCTAATTTTTGTCGGCACTTGGGGCCAAAGGTGACCCCCGTTGCACTAGGCGGCAGCAGTTCGTTCGCCAGAGTAACAGTGTGGCGCGCGTTTTGGGGGAGATCTGGGGGAACACCGCTCGGATGGTGGATTGTGTGTTGAAGGTGGCCAGGAGGACGTTTCAATTTCGATGATAGTGTTTTTGTTTTGTTGTTTTCCACCATGATGATGATGATCAAACAGCAGAAAGCCCGAAAGCAGGAACCGATACAGCGGGTGCGGGTCGTGTTACGAGATCTGCACGAGAACAACCTGGACGTGGCGAGCATCGTGACGACGGCGGCCACTGGCAGCGCGATGGCCGCGATGGTCAAAGCCAACGAACCGCCGACCGTTGAAGGGCAGCAGCAGCTTGATCAGCAGCTATCGAACGAACCCTGCCCATCGACCAGTACCGGTAAGGGAGGGCAGCAGCAGGCCGGCACGCCGCAGATAGTGGTGGGCACGATAGAGCTGAACAATTT] [+] EMBL BM578024 [CCGGCGAGTTGATCGATGGCGTCCGCGAGTCGTGTGCTGCTGCTGCCGTTGCTGCCGTTACGCTAATTTTTGTCGGCACTTGGGGCCAAAGGTGACCCCCGTTGCACTAGGCGGCAGCAGTTCGTTCGCCAGAGTAACAGTGTGGCGCGCGTTTTGGGGGAGATCTGGGGGAACACCGCTCGGATGGTGGATTGTGTGTTGAAGGTGGCCAGGAGGACGTTTCAATTTCGATGATAGTGTTTTTGTTTTGTTGTTTTCCACCATGATGATGATGATCAAACAGCAGAAAGCCCGAAAGCAGGAACCGATACAGCGGGTGCGGGTCGTGTTACGAGATCTGCACGAGAACAACCTGGACGTGGCGAGCATCGTGACGACGGCGGCCACTGGCAGCGCGATGGCCGCGATGGTCAAAGCCAACGAACCGCCGACCGTTGAAGGGCAGCAGCAGCTTGATCAGCAGCTATCGAACGAACCCTGCCCATCGACCAGTACCGGTAAGGGAGGGCAGCAGCAGGCCGGCACGCCGCAGATAGTGGTGGGCACGATAGAGCTGAACAATTT] consensusID : consensus_6068#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 418 fasta sequence [AGAATCGCACGAGGTGTAGAACGATACAGCGGGTGCGGNTCGTGTTACGAGATCTGCACGAGAACAACCTGGACGTGGCGAGCATCGTGACGACGGCGGCCACTGGCAGCGCGATGGCCGCGATGGTCAAAGCCAACGAACCGCCGACCGTTGAAGGGCAGCAGCAGCTTGATCAGCAGCTATCGAACGAACCCTGCCCATCGACCAGTACCGGTAAGGGAGGGCAGCAGCAGGCCGGCACGCCGCAATAGTGGTGGGCACGATAGAGCTGAACAATTTAAATGGGGACATTGCCAACCACAAGCAGGAAAAGGAGATCGGCACGGAGCAACCAGTTCGAGACGCTCACCCTGATCGACGAAGACGACGGAGGAGGAACAGGATCGGAACTGCTCGAACGCACACTCCTCCTCGTCAT] [+] EMBL BX466193 [AGAATCGCACGAGGTGTAGAACGATACAGCGGGTGCGGNTCGTGTTACGAGATCTGCACGAGAACAACCTGGACGTGGCGAGCATCGTGACGACGGCGGCCACTGGCAGCGCGATGGCCGCGATGGTCAAAGCCAACGAACCGCCGACCGTTGAAGGGCAGCAGCAGCTTGATCAGCAGCTATCGAACGAACCCTGCCCATCGACCAGTACCGGTAAGGGAGGGCAGCAGCAGGCCGGCACGCCGCAATAGTGGTGGGCACGATAGAGCTGAACAATTTAAATGGGGACATTGCCAACCACAAGCAGGAAAAGGAGATCGGCACGGAGCAACCAGTTCGAGACGCTCACCCTGATCGACGAAGACGACGGAGGAGGAACAGGATCGGAACTGCTCGAACGCACACTCCTCCTCGTCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_6068#1 ------------------------------------------------------------ consensus_6068#3 ------------------------------------------------------------ consensus_6068#2 -----------------------CCGGCGAGTTGATCGATGGCGTCCGCGAGTCGTGTGC 37 consensus_6068#0 GCAGAATNGCCCGAGGTTATTCACTGTGAGCTTGAAGACCGTGGCACGCGCGACTGTTAC 60 consensus_6068#1 --------------CCGCGGATTCAATCGTTCGCAATTGTTACATTGCT-----CGTGTG 41 consensus_6068#3 ------------------------------------------------------------ consensus_6068#2 TGCTGCTGCCGTTGCTGCCGTTACGCTAATTTTTG-TCGGCACTTGGGG-----CCAAAG 91 consensus_6068#0 GCAGTCGGGCACGCCAGCGTTTGGGACAAATTTAGCTGTTCGCCTGAAGTGCTGCCTCCG 120 consensus_6068#1 AAGCCTTTTTTTGGTTTGTTTGGAAGCCGTTAAAGATGGAACTGGTCATTGTACCTTGCT 101 consensus_6068#3 ------------------------------------------------------------ consensus_6068#2 GTGACCCCCGTTGCACTAGGCGGCAGCAGTTCGTTCGCCAGAGTAACAGTGTGGCGCGCG 151 consensus_6068#0 TGAACCTTCGTCGAACTATATACCTGCGGAACAGATATCGACGTGAGCTCTTGTCTTGTG 180 consensus_6068#1 ATCGGTTTGGGTCAAAATCTAGCATCGGATTGCCAA-GGTCTGTGTGTGTGTGTGTGTGG 160 consensus_6068#3 ------------------------------------------------------------ consensus_6068#2 TTTTGGGGGAGATCTGGGGGAACACCGCTCGGATGGTGGATTGTGTGTTGAAGGTGGCCA 211 consensus_6068#0 TGCAAAGGAAAGTGTGTCAG----TTGCTCGGGTGCGGTGTAGTGCAGCAGCACGGTTCA 236 consensus_6068#1 CGGTGAAGCATCCAAATCGA-AACAGACCGCGTGCGTGCGA----GTTTTCGCGTGTCGT 215 consensus_6068#3 ------------------------------------------------------------ consensus_6068#2 GGAGGACGTTTCAATTTCGATGATAGTGTTTTTGTTTTGTT----GTTTTCCACCATGAT 267 consensus_6068#0 CGGTTCCGGTTTGATAGTTGCCAAAGTGTGTGCCTTTGATAACAGGTTAGCTNTCGTGTN 296 consensus_6068#1 CCCGC-TTCTTTACGCGCGA----CCCTACAGTTCCGAC-GATT--GTTGTAGCAATTTC 267 consensus_6068#3 -------------AGAATCG----CACGAGGTGTAGAAC-GATACAGCGGGTGCGGNTCG 42 consensus_6068#2 GATGA-TGATCAAACAGCAGAAAGCCCGAAAGCAGGAACCGATACAGCGGGTGCGGGTCG 326 consensus_6068#0 GGAACGTTTCCAGCCTGCAAGTGTGACTACAGTGTTGTGGCATTCGAAGCGACCATATTC 356 * * ** * * consensus_6068#1 TTTTTCA---GAGATCTGCACGAGAACAACC-------TGGACGTGGCGAGCATCG--TG 315 consensus_6068#3 TGTTAC----GAGATCTGCACGAGAACAACC-------TGGACGTGGCGAGCATCG--TG 89 consensus_6068#2 TGTTAC----GAGATCTGCACGAGAACAACC-------TGGACGTGGCGAGCATCG--TG 373 consensus_6068#0 TTCTATAAACGAGATGTG-ACGGAATCTGCCGTCTCGCTAGCCTTCGAGAACGACGACTC 415 * * ***** ** *** * * ** * * * * * ** * ** * consensus_6068#1 ACGACGGCGGCCACTGGCAGCGCGATGGCCGCGATG-----GTCAAAGCCAACGAACCGC 370 consensus_6068#3 ACGACGGCGGCCACTGGCAGCGCGATGGCCGCGATG-----GTCAAAGCCAACGAACCGC 144 consensus_6068#2 ACGACGGCGGCCACTGGCAGCGCGATGGCCGCGATG-----GTCAAAGCCAACGAACCGC 428 consensus_6068#0 CCCAAACCTTCCCCTTCCAG-AAAAGCACTGCAATGTCGTCGTCCGGTGCGACCAAGAGC 474 * * * ** ** *** * * ** *** *** * ** ** ** consensus_6068#1 CGACCGTTGAAGGGCAGCAG-CAGCTTGATCAGCAGCTATCGAA-CGAACCCTGCCCATC 428 consensus_6068#3 CGACCGTTGAAGGGCAGCAG-CAGCTTGATCAGCAGCTATCGAA-CGAACCCTGCCCATC 202 consensus_6068#2 CGACCGTTGAAGGGCAGCAG-CAGCTTGATCAGCAGCTATCGAA-CGAACCCTGCCCATC 486 consensus_6068#0 AAGCCGAAGAAGAACAGCAATCTGCGCATACTGTGGATACCGGGGCGCAAAAAGCACAAC 534 *** **** ***** * ** * * * ** ** ** * ** ** * consensus_6068#1 GACCAGTACCGGTAAGGGAGGGC-AGCAGCAGGCCGGCAC-GCCGCA---GATAGTGGTG 483 consensus_6068#3 GACCAGTACCGGTAAGGGAGGGC-AGCAGCAGGCCGGCAC-GCCGCA----ATAGTGGTG 256 consensus_6068#2 GACCAGTACCGGTAAGGGAGGGC-AGCAGCAGGCCGGCAC-GCCGCA---GATAGTGGTG 541 consensus_6068#0 CGCAAGGGTTCGTACAGCACGACGAAGAATGGGCTGCCGCAGACGTACGGGATGCAGCCG 594 * ** *** * * * * * * *** * * * * ** * ** * * consensus_6068#1 GGCACGATAGAGCTGAACAATTTAAATGGGGACATTGCCAACCACAA----GGAAAAGGA 539 consensus_6068#3 GGCACGATAGAGCTGAACAATTTAAATGGGGACATTGCCAACCACAAG-CAGGAAAAGGA 315 consensus_6068#2 GGCACGATAGAGCTGAACAATTT------------------------------------- 564 consensus_6068#0 CGCAAGAACGAATCGTGGACGCTTGGCGGCGCGATGAATCATAGCAAAATTATAAATGCA 654 *** ** ** * * * consensus_6068#1 GATCGGCACG--AGCAACCAGTTCGAGACGCTCACCCTGATCGACGAGGACGACG-AGGA 596 consensus_6068#3 GATCGGCACGG-AGCAACCAGTTCGAGACGCTCACCCTGATCGACGAAGACGACGGAGGA 374 consensus_6068#2 ------------------------------------------------------------ consensus_6068#0 GATCTGCACGAGAACAACCTGGACGTGGCGAGCATCGTGA-CGACGGCGGCCACT-GGCA 712 consensus_6068#1 GGAACAGGATCGGAACTGCTCGAACGCACATTCCTCCT------ 634 consensus_6068#3 GGAACAGGATCGGAACTGCTCGAACGCACACTCCTCCTCGTCAT 418 consensus_6068#2 -------------------------------------------- consensus_6068#0 GCGCGATGGCCGCGATGGTCAAAGCCAACG-------------- 742 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||