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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_6069#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1234 fasta sequence
[TAGCGCGTCTGATTAAAAATAAGGAGCAATCGTTTGGCCAATCTCCACGGGTGCTAAGCCTCGACGACTATTTTCTGGTCGATAAAGAGGAGGAGGAGAAAGATCCCGTGACGGGAAGGATCACAAAGCTTACTAGATCGGTGTACGAGTTTGATGCGGAAATGGAGGATGTGTATGTGCAGAATCTGCTGAAAGCATTCAAGCGTACGATTTCGGAGCGATTGTTCGATTTTGTGATTGTCGATTGTTGCAACCATCGGCTGGAAACTTACTGTGAATTTCACAATTACGCGCGAAGCAACGGTTTTAAGGTGTACACCTGCACGATGCAAACGGATGTCGAAGATTGTGCCCGGCAAAATATTCACAATCGAACGGAGGCGGAGATTCAAGCGTACGCCGACAATTGGGCCATGGCTCCGGACGATCACGTGCAAATAAATTTCAACTCTCTGCTGGAACCGGAGCTACAGGAAGAAACGGACACGATGGTGGCCGATATGGAACTAGTCGGGGCCGATGAGGAGGAGCCATACGGAGTGGACGACCAGGGCCTGTTGGAACAAATCAGTACATCACACGACGACAGTAACGACAGCTTTGCNGATGGTACTGCTGAGCGAGGCTGGATGGTACCAGCAAACCCTTGAAGCGACCACCCACACTGGAGGACTATCTGCAGCTGGACGACGGGAATGCCGACGAGCAGCAGGAGGACGAATGCCAGTACGGCTTCTCAAAGTCCGGCGGGAAGAANAAACGCGTACGATGGGCCGATGTCGAGGAGCGCAAAGCGCAGGAAAAGATGCGTCAGCTAGGATTCGTGGTCGGCGTCACGGACTGGAGGCGCATGATGGACCCGTCCGAAGGATCCAGTGCGCTCACGCAAACGAAGTACATCGAGAGGGTGAAGAAACAGTCCTAGGAGGACGGACGTTTCAGTTACGCTGAATGTAGTAAGTGAGATGTAGGGTCAGCTTCAATGGACTGATTTGGGATTTCCCCGTTGAATGTGAGTGGAAGGAAACTAGGAAACATTGTGCACACGCATACTAATCGATCATTATTGCAGGTGTGTCGAGCAAGGTGTGTCGCATAATATGTTTTGTATGTTTGTGTGTGTGTATTTTTCGGTTTTCATACACCGAACAAGGACGGTGTTGGAACTTCAGCAATTAGTAAGACAAATCGTGTTTTATTGGCAGTTATGTACGGTATGCTACACGCGAGAGCG]
[+] EMBL BX627478 [TAGCGCGTCTGATTAAAAATAAGGAGCAATCGTTTGGCCAATCTCCACGGGTGCTAAGCCTCGACGACTATTTTCTGGTCGATAAAGAGGAGGAGGAGAAAGATCCCGTGACGGGAAGGATCACAAAGCTTACTAGATCGGTGTACGAGTTTGATGCGGAAATGGAGGATGTGTATGTGCAGAATCTGCTGAAAGCATTCAAGCGTACGATTTCGGAGCGATTGTTCGATTTTGTGATTGTCGATTGTTGCAACCATCGGCTGGAAACTTACTGTGAATTTCACAATTACGCGCGAAGCAACGGTTTTAAGGTGTACACCTGCACGATGCAAACGGATGTCGAAGATTGTGCCCGGCAAAATATTCACAATCGAACGGAGGCGGAGATTCAAGCGTACGCCGACAATTGGGCCATGGCTCCGGACGATCACGTGCAAATAAATTTCAACTCTCTGCTGGAACCGGAGCTACAGGAAGAAACGGACACGATGGTGGCCGATATGGAACTAGTCGGGGCCGATGAGGAGGAGCCATACGGAGTGGACGACCAGGGCCTGTTGGAACAAATCAGTACATCACACGACGACAGTAACGACAGCTTTGCNGATGGTACTGCTGAGCGAAGCTGGA ]
[+] EMBL BX623843 [ CTCGACGACTATTTTCTGGTCGATAAAGAGGAGGAGGAGAAAGATCCCGTGACGGGAAGGATCACAAAGCTTACTAGATCGGTGTACGAGTTTGATGCGGAAATGGAGGATGTGTATGTGCAGAATCTGCTGAAAGCATTCAAGCGTACGATTTCGGAGCGATTGTTCGATTTTGTGATTGTCGATTGTTGCAACCATCGGCTGGAAACTTACTGTGAATTTCACAATTACGCGCGAAGCAACGGTTTTAAGGTGTACACCTGCACGATGCAAACGGATGTCGAAGATTGTGCCCGGCAAAATATTCACAATCGAACGGAGGCGGAGATTCAAGCGTACGCCGACAATTGGGCCATGGCTCCGGACGATCACGTGCAAATAAATTTCAACTCTCTGCTGGAACCGGAGCTACAGGAAGAAACGGACACGATGGTGGCCGATATGGAACTAGTCGGGGCCGATGAGGAGGAGCCATACGGAGTGGACGACCAGGGCCTGTTGGAACAAATCAGTACATCACACGACGACAGTAACGACAGCTTTGCGGATGGTACTGCTGAGCGAGGCTGGATGGTACCAGCAAACCCTTGAAGCGACCACCCACACTGGAGGACTATCTGCAGCTGGACGACGGGAATGCCGACGAGCAGCAGGAGGACGAATGCCAGTACGGCTTCTCAAAGTCCGGCGGGAAGAANAAACGCGTACGATGGGCCGATGTCGAGGAGC ]
[+] EMBL BX615900 [ tAGCGAGGCTGGATGGTACCAGCAAACCCTTGAAGCGACCACCCACACTGGAGGACTATCTGCAGCTGGACGACGGGAATGCCGACGAGCAGCAGGAGGACGAATGCCAGGACGGCTTCTCAAAGTCCGGCGGGAAGAAGAAACGCTTACGATGGGCCGATGTC GGAGCGCAAAGCGCAGGAAAAGATGCGTCAGCTAGGATTCGTGGTCGGCGTCACGGACTGGAGGCGCATGATGGACCCGTCCGAAGGATCCAGTGCGCTCACGCAAACGAAGTACATCGAGAGGGTGAAGAAACAGTCCTAGGAGGACGGACGTTTCAGTTACGCTGAATGTAGTAAGTGAGATGTAGGGTCAGCTTCAATGGACTGATTTGGGATTTCCCCGTTGAATGTGAGTGGAAGGAAACTAGGAAACATTGTGCACACGCATACTAATCGATCATTATTGCAGGTGTGTCGAGCAAGGTGTGTCGCATAATATGTTTTGTATGTTTGTGTGTGTGTATTTTTCGGTTTTCATACACCGAACAAGGACGGTGTTGGAACTTCAGCAATTAGTAAGACAAATCGTGTTTTATTGGCAGTTATGTACGGTATGCTACACGCGAGAGCG]
consensusID : consensus_6069#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 726 fasta sequence
[CACGTGCACGATGCAAACGGATGTCGAAGATTGTGCCCGGCAAAATATTCACAATCGAACGGAGGCGGAGATTCAAGCGTACGCCGACAATTGGGCAATGGCTCCGGACGATCACGTGCAAATAAACTTCAACTCTCTGCTGGAACCGGAGCTACAGGAAGAAACGGACACGATGGTGGCCGATATGGAACTAGTCGAGGCCGATGAGGAGGAGCCGTACGGAGCAGACGACCAGGGCCTGTTGGAACAAATCAGTACATCACACGACGACAGTAACGACAGCTTTGCGGATGGTACTGCTGAGTGTGACTTGTTCGCGAGTAAATGGGACCACGACGCCAGTGAGCAGAATTTAGCGAGGCTGGATGGTACCAGCAAACCCTTGAAGCGACCACCCACACTGGAGGACTATCTGCAGCTGGACGACGGGAATGCCGACGAGCAGCAGGAGGACGAATGCCAGGACGGCTTCTCAAAGTCCGGCGGGAAGAAGAAACGCGTACGATGGGCCGATGTCGAGGAGCGCAAAGCGCAGGAAAAGATGCGTCAGCTAGGATTCGTGGTCGGCGTCACGGACTGGAGGCGCATGATGGACCCGTCCGAAGGATCCAGTGCGCTCACGCAAACGAAGTACATCGAGAGGGTGAAGAAACAGTCCTAGGAGGACGGACGTTTCAGTTACGCTGAATGTAGTAAGTGAGATGTAGGGTCAGCTTCAATGGACTG]
[+] EMBL BX616992 [CACGTGCACGATGCAAACGGATGTCGAAGATTGTGCCCGGCAAAATATTCACAATCGAACGGAGGCGGAGATTCAAGCGTACGCCGACAATTGGGCAATGGCTCCGGACGATCACGTGCAAATAAACTTCAACTCTCTGCTGGAACCGGAGCTACAGGAAGAAACGGACACGATGGTGGCCGATATGGAACTAGTCGAGGCCGATGAGGAGGAGCCGTACGGAGCAGACGACCAGGGCCTGTTGGAACAAATCAGTACATCACACGACGACAGTAACGACAGCTTTGCGGATGGTACTGCTGAGTGTGACTTGTTCGCGAGTAAATGGGACCACGACGCCAGTGAGCAGAATTTAGCGAGGCTGGATGGTACCAGCAAACCCTTGAAGCGACCACCCACACTGGAGGACTATCTGCAGCTGGACGACGGGAATGCCGACGAGCAGCAGGAGGACGAATGCCAGGACGGCTTCTCAAAGTCCGGCGGGAAGAAGAAACGCGTACGATGGGCCGATGTCGAGGAGCGCAAAGCGCAGGAAAAGATGCGTCAGCTAGGATTCGTGGTCGGCGTCACGGACTGGAGGCGCATGATGGACCCGTCCGAAGGATCCAGTGCGCTCACGCAAACGAAGTACATCGAGAGGGTGAAGAAACAGTCCTAGGAGGACGGACGTTTCAGTTACGCTGAATGTAGTAAGTGAGATGTAGGGTCAGCTTCAATGGACTG]
consensusID : consensus_6069#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 671 fasta sequence
[CGCCCTGAGGTTTATGACCAGTGCCTGTTGGAACAAATCAGTACATCACACGACGACAGTAACGACAGCTTTGCGGATGGTACTGCTGAGCGAGGCTGGATGGTACCAGCAAACCCTTGAAGCTGACACCCACACTGGAGTGACTATACTGCAGCTGGACGACGTGGAATGNCGACGAGCAGCAGTGAGTGACGACATGCCAGGACTGNGCTTCTCAAANGCTCCTGGCGGGAAGAAGAAACTGCGTACTGATGTGTGCCTGATGTCTGAGGAGCGCAAAGCTGCAGTGNACAAGATGCGTCAGCTAGGATTCTGTGGTACGTGCNGTCACTGGACTGTGAGTGCTGCATGATGGACCCGTACCGAAGTGATACCAGCTGCGCTTACNNGCAAACGAAGTACATCGAGAGTGGTGAACGAAACAGTCCTTAGCGANTGACTGGACCTATTACAGNTATACGCTGCAACTGTAGTAAGTNTGCAGATGTAGAGTGNGTGAGCTTCAAATTGGACTCGCATTACTTGGGGGGATATAACCCCCCCGCTTGACATTGTNGCAAGCTTAGGCAAATGTGAAACTCAGAGGAACACATNTGTCGCACACGCATAACTAAATCCGCACTCACACTCACTCTGCANGTGATGTGTACGCAGCAANGTGTTGTACCGCA]
[+] EMBL AL930261 [CGCCCTGAGGTTTATGACCAGTGCCTGTTGGAACAAATCAGTACATCACACGACGACAGTAACGACAGCTTTGCGGATGGTACTGCTGAGCGAGGCTGGATGGTACCAGCAAACCCTTGAAGCTGACACCCACACTGGAGTGACTATACTGCAGCTGGACGACGTGGAATGNCGACGAGCAGCAGTGAGTGACGACATGCCAGGACTGNGCTTCTCAAANGCTCCTGGCGGGAAGAAGAAACTGCGTACTGATGTGTGCCTGATGTCTGAGGAGCGCAAAGCTGCAGTGNACAAGATGCGTCAGCTAGGATTCTGTGGTACGTGCNGTCACTGGACTGTGAGTGCTGCATGATGGACCCGTACCGAAGTGATACCAGCTGCGCTTACNNGCAAACGAAGTACATCGAGAGTGGTGAACGAAACAGTCCTTAGCGANTGACTGGACCTATTACAGNTATACGCTGCAACTGTAGTAAGTNTGCAGATGTAGAGTGNGTGAGCTTCAAATTGGACTCGCATTACTTGGGGGGATATAACCCCCCCGCTTGACATTGTNGCAAGCTTAGGCAAATGTGAAACTCAGAGGAACACATNTGTCGCACACGCATAACTAAATCCGCACTCACACTCACTCTGCANGTGATGTGTACGCAGCAANGTGTTGTACCGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_6069#0 TAGCGCGTCTGATTAAAAATAAGGAGCAATCGTTTGGCCAATCTCCACGGGTGCTAAGCC 60
consensus_6069#1 ------------------------------------------------------------
consensus_6069#2 ------------------------------------------------------------
consensus_6069#0 TCGACGACTATTTTCTGGTCGATAAAGAGGAGGAGGAGAAAGATCCCGTGACGGGAAGGA 120
consensus_6069#1 ------------------------------------------------------------
consensus_6069#2 ------------------------------------------------------------
consensus_6069#0 TCACAAAGCTTACTAGATCGGTGTACGAGTTTGATGCGGAAATGGAGGATGTGTATGTGC 180
consensus_6069#1 ------------------------------------------------------------
consensus_6069#2 ------------------------------------------------------------
consensus_6069#0 AGAATCTGCTGAAAGCATTCAAGCGTACGATTTCGGAGCGATTGTTCGATTTTGTGATTG 240
consensus_6069#1 ------------------------------------------------------------
consensus_6069#2 ------------------------------------------------------------
consensus_6069#0 TCGATTGTTGCAACCATCGGCTGGAAACTTACTGTGAATTTCACAATTACGCGCGAAGCA 300
consensus_6069#1 ------------------------------------------------------------
consensus_6069#2 ------------------------------------------------------------
consensus_6069#0 ACGGTTTTAAGGTGTACACCTGCACGATGCAAACGGATGTCGAAGATTGTGCCCGGCAAA 360
consensus_6069#1 ----------------CACGTGCACGATGCAAACGGATGTCGAAGATTGTGCCCGGCAAA 44
consensus_6069#2 ------------------------------------------------------------
consensus_6069#0 ATATTCACAATCGAACGGAGGCGGAGATTCAAGCGTACGCCGACAATTGGGCCATGGCTC 420
consensus_6069#1 ATATTCACAATCGAACGGAGGCGGAGATTCAAGCGTACGCCGACAATTGGGCAATGGCTC 104
consensus_6069#2 ------------------------------------------------------------
consensus_6069#0 CGGACGATCACGTGCAAATAAATTTCAACTCTCTGCTGGAACCGGAGCTACAGGAAGAAA 480
consensus_6069#1 CGGACGATCACGTGCAAATAAACTTCAACTCTCTGCTGGAACCGGAGCTACAGGAAGAAA 164
consensus_6069#2 ------------------------------------------------------------
consensus_6069#0 CGGACACGATGGTGGCCGATATGGAACTAGTCGGGGCCGATGAGGAGGAGCCATACGGAG 540
consensus_6069#1 CGGACACGATGGTGGCCGATATGGAACTAGTCGAGGCCGATGAGGAGGAGCCGTACGGAG 224
consensus_6069#2 --------------------------------------------------CGCCCTGAGG 10
* * *
consensus_6069#0 TGGACGACCAGGGCCTGTTGGAACAAATCAGTACATCACACGACGACAGTAACGACAGCT 600
consensus_6069#1 CAGACGACCAGGGCCTGTTGGAACAAATCAGTACATCACACGACGACAGTAACGACAGCT 284
consensus_6069#2 TTTATGACCAGTGCCTGTTGGAACAAATCAGTACATCACACGACGACAGTAACGACAGCT 70
* ****** ************************************************
consensus_6069#0 TTGCNGATGGTACTGCTGAG---------------------------------------- 620
consensus_6069#1 TTGCGGATGGTACTGCTGAGTGTGACTTGTTCGCGAGTAAATGGGACCACGACGCCAGTG 344
consensus_6069#2 TTGCGGATGGTACTGCTGAG---------------------------------------- 90
**** ***************
consensus_6069#0 ------------CGAGGCTGGATGGTACCAGCAAACCCTTGAAGCGACCACCCACACTGG 668
consensus_6069#1 AGCAGAATTTAGCGAGGCTGGATGGTACCAGCAAACCCTTGAAGCGACCACCCACACTGG 404
consensus_6069#2 ------------CGAGGCTGGATGGTACCAGCAAACCCTTGAAGCTGACACCCACACTGG 138
********************************* ************
consensus_6069#0 AG-GACTAT-CTGCAGCTGGACGACG-GGAATGCCGACGAGCAGCAG-GAG-GACGA-AT 722
consensus_6069#1 AG-GACTAT-CTGCAGCTGGACGACG-GGAATGCCGACGAGCAGCAG-GAG-GACGA-AT 458
consensus_6069#2 AGTGACTATACTGCAGCTGGACGACGTGGAATGNCGACGAGCAGCAGTGAGTGACGACAT 198
** ****** **************** ****** ************* *** ***** **
consensus_6069#0 GCCAGTAC--GGCTTCTCAAAG---TCCGGCGGGAAGAANAAAC-GCGTAC-GATGGG-- 773
consensus_6069#1 GCCAGGAC--GGCTTCTCAAAG---TCCGGCGGGAAGAAGAAAC-GCGTAC-GATGGG-- 509
consensus_6069#2 GCCAGGACTGNGCTTCTCAAANGCTCCTGGCGGGAAGAAGAAACTGCGTACTGATGTGTG 258
***** ** ********** * *********** **** ****** **** *
consensus_6069#0 -CCGATGTC-GAGGAGCGCAAAGC-GCAG--GAAAAGATGCGTCAGCTAGGATTC-GTGG 827
consensus_6069#1 -CCGATGTC-GAGGAGCGCAAAGC-GCAG--GAAAAGATGCGTCAGCTAGGATTC-GTGG 563
consensus_6069#2 CCTGATGTCTGAGGAGCGCAAAGCTGCAGTGNACAAGATGCGTCAGCTAGGATTCTGTGG 318
* ****** ************** **** * ********************* ****
consensus_6069#0 T---CGGCGTCAC-GGACTGGAGGCGC---ATGATGGACCCGT-CCGAAG-GAT-CCAG- 876
consensus_6069#1 T---CGGCGTCAC-GGACTGGAGGCGC---ATGATGGACCCGT-CCGAAG-GAT-CCAG- 612
consensus_6069#2 TACGTGCNGTCACTGGACTGTGAGTGCTGCATGATGGACCCGTACCGAAGTGATACCAGC 378
* * ***** ****** * ** ************* ****** *** ****
consensus_6069#0 TGCGCT--CACGCAAACGAAGTACATCGAGAG-GGTGAA-GAAACAGTCCTAGGAGGACG 932
consensus_6069#1 TGCGCT--CACGCAAACGAAGTACATCGAGAG-GGTGAA-GAAACAGTCCTAGGAGGACG 668
consensus_6069#2 TGCGCTTACNNGCAAACGAAGTACATCGAGAGTGGTGAACGAAACAGTCCTTAGCGANTG 438
****** * ********************* ****** *********** * * *
consensus_6069#0 GACGTTTCAGTTAC-GCTGAATGTAGTAAGTGAGATGTAGGGTCAGCTTCAATG-GACTG 990
consensus_6069#1 GACGTTTCAGTTAC-GCTGAATGTAGTAAGTGAGATGTAGGGTCAGCTTCAATG-GACTG 726
consensus_6069#2 ACTGGACCTATTACAGNTATACGCTGCAACTGTAGTAAGTNTGCAGATGTAGAGTGNGTG 498
* * **** * * * * * ** ** * *** * * * * **
consensus_6069#0 ATTTGGGATTTCCCCGTTGAATGTGAGTGGAAGGAAACTAGGAAACATTGTGCACACGCA 1050
consensus_6069#1 ------------------------------------------------------------
consensus_6069#2 AGCTTCAAATTGGACTC---GCATTACTTGGGGGGATATAACCCCCCCGCTTGACATTGT 555
consensus_6069#0 TACTAATCGATCATTATTGCAGGTGTGTCGAGCAAGGTGTGTCGCATAATATGTTTTGTA 1110
consensus_6069#1 ------------------------------------------------------------
consensus_6069#2 NGCAAGCTTAGGCAAATGTGAAACTCAGAGGAACACATNTGTCGCACACGCATAACTAAA 615
consensus_6069#0 TGTTTGTGTGTGTGTATTTTTCGGTTTTCATACACCGAACAAGG-ACGGTGTTGGAACTT 1169
consensus_6069#1 ------------------------------------------------------------
consensus_6069#2 TCCGCACTCACACTCACTCTGCANGTGATGTGTACGCAGCAANGTGTTGTACCGCA---- 671
consensus_6069#0 CAGCAATTAGTAAGACAAATCGTGTTTTATTGGCAGTTATGTACGGTATGCTACACGCGA 1229
consensus_6069#1 ------------------------------------------------------------
consensus_6069#2 ------------------------------------------------------------
consensus_6069#0 GAGCG 1234
consensus_6069#1 -----
consensus_6069#2 -----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||